Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2327

Experiment: Phosphomycin 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2326 and Psest_2327 are separated by 37 nucleotidesPsest_2327 and Psest_2328 are separated by 190 nucleotides Psest_2326: Psest_2326 - aminodeoxychorismate synthase, component I, bacterial clade, at 2,480,248 to 2,481,594 _2326 Psest_2327: Psest_2327 - phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein, at 2,481,632 to 2,482,249 _2327 Psest_2328: Psest_2328 - phosophoadenylyl-sulfate reductase (thioredoxin)/thioredoxin-dependent adenylylsulfate APS reductase, at 2,482,440 to 2,483,174 _2328 Position (kb) 2481 2482 2483Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2480.714 kb on + strand, within Psest_2326at 2480.715 kb on - strand, within Psest_2326at 2480.801 kb on - strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.830 kb on + strand, within Psest_2326at 2480.831 kb on - strand, within Psest_2326at 2480.831 kb on - strand, within Psest_2326at 2480.831 kb on - strand, within Psest_2326at 2480.831 kb on - strand, within Psest_2326at 2480.911 kb on + strand, within Psest_2326at 2480.911 kb on + strand, within Psest_2326at 2480.938 kb on - strand, within Psest_2326at 2480.944 kb on + strand, within Psest_2326at 2480.945 kb on - strand, within Psest_2326at 2481.075 kb on + strand, within Psest_2326at 2481.076 kb on - strand, within Psest_2326at 2481.224 kb on - strand, within Psest_2326at 2481.391 kb on + strand, within Psest_2326at 2481.391 kb on + strand, within Psest_2326at 2481.391 kb on + strand, within Psest_2326at 2481.391 kb on + strand, within Psest_2326at 2481.391 kb on + strand, within Psest_2326at 2481.391 kb on + strand, within Psest_2326at 2481.392 kb on - strand, within Psest_2326at 2481.392 kb on - strand, within Psest_2326at 2481.392 kb on - strand, within Psest_2326at 2481.392 kb on - strand, within Psest_2326at 2481.392 kb on - strand, within Psest_2326at 2481.392 kb on - strand, within Psest_2326at 2481.409 kb on + strand, within Psest_2326at 2481.409 kb on + strand, within Psest_2326at 2481.409 kb on + strand, within Psest_2326at 2481.409 kb on + strand, within Psest_2326at 2481.409 kb on + strand, within Psest_2326at 2481.409 kb on + strand, within Psest_2326at 2481.409 kb on + strand, within Psest_2326at 2481.410 kb on - strand, within Psest_2326at 2481.410 kb on - strand, within Psest_2326at 2481.410 kb on - strand, within Psest_2326at 2481.789 kb on + strand, within Psest_2327at 2481.789 kb on + strand, within Psest_2327at 2481.790 kb on - strand, within Psest_2327at 2481.790 kb on - strand, within Psest_2327at 2481.790 kb on - strand, within Psest_2327at 2481.790 kb on - strand, within Psest_2327at 2481.819 kb on + strand, within Psest_2327at 2481.819 kb on + strand, within Psest_2327at 2481.819 kb on + strand, within Psest_2327at 2481.819 kb on + strand, within Psest_2327at 2481.819 kb on + strand, within Psest_2327at 2481.820 kb on - strand, within Psest_2327at 2481.820 kb on - strand, within Psest_2327at 2481.876 kb on + strand, within Psest_2327at 2481.969 kb on + strand, within Psest_2327at 2481.970 kb on - strand, within Psest_2327at 2482.127 kb on + strand, within Psest_2327at 2482.127 kb on + strand, within Psest_2327at 2482.127 kb on + strand, within Psest_2327at 2482.128 kb on - strand, within Psest_2327at 2482.241 kb on + strandat 2482.242 kb on - strandat 2482.323 kb on - strandat 2482.324 kb on + strandat 2482.351 kb on - strandat 2482.369 kb on + strandat 2482.369 kb on + strandat 2482.370 kb on - strandat 2482.370 kb on - strandat 2482.370 kb on - strandat 2482.370 kb on - strandat 2482.370 kb on - strandat 2482.373 kb on + strandat 2482.383 kb on + strandat 2482.425 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml
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2,480,714 + Psest_2326 0.35 -1.1
2,480,715 - Psest_2326 0.35 +0.1
2,480,801 - Psest_2326 0.41 -1.1
2,480,830 + Psest_2326 0.43 -1.4
2,480,830 + Psest_2326 0.43 -0.9
2,480,830 + Psest_2326 0.43 -2.0
2,480,830 + Psest_2326 0.43 +1.3
2,480,830 + Psest_2326 0.43 +0.9
2,480,830 + Psest_2326 0.43 -0.2
2,480,830 + Psest_2326 0.43 -0.7
2,480,830 + Psest_2326 0.43 +0.1
2,480,830 + Psest_2326 0.43 +0.1
2,480,830 + Psest_2326 0.43 -0.8
2,480,830 + Psest_2326 0.43 +2.3
2,480,830 + Psest_2326 0.43 -0.9
2,480,830 + Psest_2326 0.43 -2.2
2,480,830 + Psest_2326 0.43 -0.1
2,480,831 - Psest_2326 0.43 -0.8
2,480,831 - Psest_2326 0.43 +0.5
2,480,831 - Psest_2326 0.43 +0.6
2,480,831 - Psest_2326 0.43 +0.0
2,480,911 + Psest_2326 0.49 +0.9
2,480,911 + Psest_2326 0.49 -0.6
2,480,938 - Psest_2326 0.51 -1.3
2,480,944 + Psest_2326 0.52 +1.3
2,480,945 - Psest_2326 0.52 +1.9
2,481,075 + Psest_2326 0.61 +0.2
2,481,076 - Psest_2326 0.61 -0.6
2,481,224 - Psest_2326 0.72 +0.8
2,481,391 + Psest_2326 0.85 -0.1
2,481,391 + Psest_2326 0.85 +0.2
2,481,391 + Psest_2326 0.85 +0.4
2,481,391 + Psest_2326 0.85 +0.7
2,481,391 + Psest_2326 0.85 +0.3
2,481,391 + Psest_2326 0.85 -0.8
2,481,392 - Psest_2326 0.85 -0.7
2,481,392 - Psest_2326 0.85 -1.6
2,481,392 - Psest_2326 0.85 -0.1
2,481,392 - Psest_2326 0.85 -1.3
2,481,392 - Psest_2326 0.85 +0.7
2,481,392 - Psest_2326 0.85 +0.3
2,481,409 + Psest_2326 0.86 +0.7
2,481,409 + Psest_2326 0.86 +0.9
2,481,409 + Psest_2326 0.86 +1.0
2,481,409 + Psest_2326 0.86 -0.1
2,481,409 + Psest_2326 0.86 +2.8
2,481,409 + Psest_2326 0.86 +1.1
2,481,409 + Psest_2326 0.86 +1.1
2,481,410 - Psest_2326 0.86 -0.0
2,481,410 - Psest_2326 0.86 -1.1
2,481,410 - Psest_2326 0.86 +0.7
2,481,789 + Psest_2327 0.25 +0.9
2,481,789 + Psest_2327 0.25 +1.3
2,481,790 - Psest_2327 0.26 +0.0
2,481,790 - Psest_2327 0.26 -0.4
2,481,790 - Psest_2327 0.26 +0.8
2,481,790 - Psest_2327 0.26 +1.8
2,481,819 + Psest_2327 0.30 -0.6
2,481,819 + Psest_2327 0.30 -1.3
2,481,819 + Psest_2327 0.30 -0.6
2,481,819 + Psest_2327 0.30 +1.6
2,481,819 + Psest_2327 0.30 -1.3
2,481,820 - Psest_2327 0.30 +0.6
2,481,820 - Psest_2327 0.30 -0.2
2,481,876 + Psest_2327 0.39 +2.5
2,481,969 + Psest_2327 0.55 +1.0
2,481,970 - Psest_2327 0.55 -0.3
2,482,127 + Psest_2327 0.80 -0.6
2,482,127 + Psest_2327 0.80 -0.3
2,482,127 + Psest_2327 0.80 +0.4
2,482,128 - Psest_2327 0.80 +1.8
2,482,241 + -0.2
2,482,242 - -0.2
2,482,323 - +1.8
2,482,324 + +1.1
2,482,351 - -1.3
2,482,369 + -0.1
2,482,369 + -0.2
2,482,370 - +2.3
2,482,370 - -0.7
2,482,370 - -1.3
2,482,370 - -0.3
2,482,370 - -1.3
2,482,373 + +1.9
2,482,383 + +0.4
2,482,425 + -0.3

Or see this region's nucleotide sequence