Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3534

Experiment: benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3531 and Psest_3532 are separated by 8 nucleotidesPsest_3532 and Psest_3533 overlap by 1 nucleotidesPsest_3533 and Psest_3534 overlap by 4 nucleotidesPsest_3534 and Psest_3535 are separated by 5 nucleotidesPsest_3535 and Psest_3536 are separated by 107 nucleotidesPsest_3536 and Psest_3537 are separated by 119 nucleotides Psest_3531: Psest_3531 - Peptidase propeptide and YPEB domain., at 3,711,229 to 3,711,537 _3531 Psest_3532: Psest_3532 - Peptidase propeptide and YPEB domain., at 3,711,546 to 3,711,851 _3532 Psest_3533: Psest_3533 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 3,711,851 to 3,712,516 _3533 Psest_3534: Psest_3534 - Signal transduction histidine kinase, at 3,712,513 to 3,713,829 _3534 Psest_3535: Psest_3535 - hypothetical protein, at 3,713,835 to 3,714,050 _3535 Psest_3536: Psest_3536 - hypothetical protein, at 3,714,158 to 3,714,256 _3536 Psest_3537: Psest_3537 - hypothetical protein, at 3,714,376 to 3,715,248 _3537 Position (kb) 3712 3713 3714Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3711.750 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.754 kb on - strand, within Psest_3532at 3711.962 kb on + strand, within Psest_3533at 3711.984 kb on - strand, within Psest_3533at 3712.142 kb on + strand, within Psest_3533at 3712.143 kb on - strand, within Psest_3533at 3712.332 kb on - strand, within Psest_3533at 3712.388 kb on + strand, within Psest_3533at 3713.268 kb on - strand, within Psest_3534at 3713.890 kb on - strand, within Psest_3535at 3713.890 kb on - strand, within Psest_3535at 3713.902 kb on - strand, within Psest_3535at 3714.020 kb on + strand, within Psest_3535at 3714.061 kb on + strandat 3714.061 kb on + strandat 3714.061 kb on + strandat 3714.061 kb on + strandat 3714.092 kb on + strandat 3714.092 kb on + strandat 3714.092 kb on + strandat 3714.180 kb on + strand, within Psest_3536at 3714.181 kb on - strand, within Psest_3536at 3714.303 kb on + strandat 3714.306 kb on - strandat 3714.310 kb on - strandat 3714.349 kb on + strandat 3714.349 kb on + strandat 3714.349 kb on + strandat 3714.535 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.568 kb on + strand, within Psest_3537at 3714.569 kb on - strand, within Psest_3537at 3714.569 kb on - strand, within Psest_3537at 3714.722 kb on + strand, within Psest_3537at 3714.758 kb on + strand, within Psest_3537at 3714.758 kb on + strand, within Psest_3537at 3714.759 kb on - strand, within Psest_3537at 3714.811 kb on + strand, within Psest_3537

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml
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3,711,750 - Psest_3532 0.67 -0.4
3,711,754 - Psest_3532 0.68 -0.1
3,711,754 - Psest_3532 0.68 -1.1
3,711,754 - Psest_3532 0.68 -2.1
3,711,754 - Psest_3532 0.68 -1.8
3,711,754 - Psest_3532 0.68 -1.1
3,711,754 - Psest_3532 0.68 -2.7
3,711,754 - Psest_3532 0.68 -0.3
3,711,754 - Psest_3532 0.68 +0.7
3,711,754 - Psest_3532 0.68 -0.6
3,711,754 - Psest_3532 0.68 -1.0
3,711,754 - Psest_3532 0.68 -0.9
3,711,754 - Psest_3532 0.68 +0.5
3,711,754 - Psest_3532 0.68 +0.2
3,711,754 - Psest_3532 0.68 -0.7
3,711,754 - Psest_3532 0.68 -0.9
3,711,754 - Psest_3532 0.68 +0.5
3,711,754 - Psest_3532 0.68 -0.5
3,711,754 - Psest_3532 0.68 +0.2
3,711,754 - Psest_3532 0.68 -0.1
3,711,754 - Psest_3532 0.68 +0.7
3,711,754 - Psest_3532 0.68 -0.1
3,711,962 + Psest_3533 0.17 +0.6
3,711,984 - Psest_3533 0.20 -0.9
3,712,142 + Psest_3533 0.44 -0.1
3,712,143 - Psest_3533 0.44 -0.2
3,712,332 - Psest_3533 0.72 +0.9
3,712,388 + Psest_3533 0.81 -0.3
3,713,268 - Psest_3534 0.57 -0.4
3,713,890 - Psest_3535 0.25 -3.5
3,713,890 - Psest_3535 0.25 +0.5
3,713,902 - Psest_3535 0.31 -0.6
3,714,020 + Psest_3535 0.86 +1.0
3,714,061 + -2.4
3,714,061 + +1.5
3,714,061 + -0.1
3,714,061 + +1.4
3,714,092 + +1.1
3,714,092 + +0.2
3,714,092 + +0.7
3,714,180 + Psest_3536 0.22 -1.5
3,714,181 - Psest_3536 0.23 +2.3
3,714,303 + +2.6
3,714,306 - -0.0
3,714,310 - -0.6
3,714,349 + -1.0
3,714,349 + +0.2
3,714,349 + -1.5
3,714,535 + Psest_3537 0.18 -0.5
3,714,568 + Psest_3537 0.22 -1.6
3,714,568 + Psest_3537 0.22 -1.4
3,714,568 + Psest_3537 0.22 +0.3
3,714,568 + Psest_3537 0.22 -0.5
3,714,568 + Psest_3537 0.22 +1.5
3,714,568 + Psest_3537 0.22 -1.2
3,714,568 + Psest_3537 0.22 -2.8
3,714,569 - Psest_3537 0.22 -0.0
3,714,569 - Psest_3537 0.22 -1.1
3,714,722 + Psest_3537 0.40 +0.5
3,714,758 + Psest_3537 0.44 +1.0
3,714,758 + Psest_3537 0.44 -0.5
3,714,759 - Psest_3537 0.44 -1.5
3,714,811 + Psest_3537 0.50 -0.4

Or see this region's nucleotide sequence