Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2011

Experiment: benzoic 0.4 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	benzoic 0.4 mg/ml
2,127,180	+				-0.5
2,127,180	+				+0.4
2,127,180	+				-1.8
2,127,183	+				-0.6
2,127,183	+				-0.6
2,127,240	-				+0.2
2,127,258	+				-1.8
2,127,258	+				+0.9
2,127,258	+				+0.0
2,127,259	-				+1.0
2,127,275	-				-2.7
2,127,306	+				+0.6
2,127,307	-				-0.1
2,127,338	-				-1.3
2,127,342	-				+1.4
2,127,343	+				-0.9
2,127,343	+				+0.6
2,127,344	-				+0.9
2,127,378	+				+0.6
2,127,379	-				-1.1
2,127,379	-				+0.4
2,127,380	+				-0.6
2,127,380	+				+0.1
2,127,452	+				-0.7
2,127,452	+				-0.4
2,127,456	+				+2.0
2,127,456	+				-0.1
2,127,456	+				-1.6
2,127,457	-				-0.3
2,127,525	+				-0.0
2,127,525	+				+0.2
2,127,777	-		Psest_2010	0.60	+0.7
2,127,960	+				+0.1
2,128,008	-				+1.5
2,128,009	+				-0.9
2,128,009	+				-0.6
2,128,090	+				-0.3
2,128,190	+				-2.6
2,128,190	+				-2.4
2,128,205	+				-4.2
2,128,206	-				-1.6
2,128,206	-				-1.0
2,128,325	-		Psest_2011	0.14	-2.6
2,128,419	+		Psest_2011	0.21	-1.6
2,128,420	-		Psest_2011	0.21	-3.8
2,128,420	-		Psest_2011	0.21	-3.2
2,128,440	+		Psest_2011	0.22	-0.2
2,128,492	-		Psest_2011	0.26	-2.1
2,128,615	+		Psest_2011	0.36	-1.5
2,128,615	+		Psest_2011	0.36	-2.6
2,128,616	-		Psest_2011	0.36	-1.4
2,128,616	-		Psest_2011	0.36	-0.4
2,128,617	+		Psest_2011	0.36	+0.2
2,128,617	+		Psest_2011	0.36	+0.1
2,128,617	+		Psest_2011	0.36	-0.5
2,128,617	+		Psest_2011	0.36	+0.6
2,128,617	+		Psest_2011	0.36	-1.4
2,128,617	+		Psest_2011	0.36	-2.2
2,128,617	+		Psest_2011	0.36	+0.8
2,128,617	+		Psest_2011	0.36	-2.5
2,128,617	+		Psest_2011	0.36	-2.6
2,128,617	+		Psest_2011	0.36	-1.6
2,128,617	+		Psest_2011	0.36	-0.8
2,128,617	+		Psest_2011	0.36	-1.0
2,128,617	+		Psest_2011	0.36	-1.2
2,128,617	+		Psest_2011	0.36	-0.2
2,128,617	+		Psest_2011	0.36	-0.8
2,128,617	+		Psest_2011	0.36	-1.9
2,128,617	+		Psest_2011	0.36	-1.5
2,128,618	-		Psest_2011	0.36	-0.8
2,128,618	-		Psest_2011	0.36	+0.1
2,128,714	-		Psest_2011	0.43	-0.5
2,128,757	+		Psest_2011	0.47	-0.7
2,128,758	-		Psest_2011	0.47	-0.3
2,128,771	+		Psest_2011	0.48	-1.7
2,128,771	+		Psest_2011	0.48	-2.6
2,128,771	+		Psest_2011	0.48	-0.5
2,128,830	+		Psest_2011	0.52	-0.1
2,128,831	-		Psest_2011	0.52	-3.8
2,129,246	+		Psest_2011	0.84	-1.1
2,129,370	+				+0.1
2,129,370	+				-2.4
2,129,371	-				-2.3
2,129,376	+				-1.1
2,129,377	-				-1.9
2,129,410	+				+0.4
2,129,411	-				-0.9
2,129,411	-				-1.4
2,129,661	-				+1.5
2,129,671	+				-0.3
2,129,671	+				-1.3
2,129,672	-				-0.1
2,129,672	-				-2.1
2,129,732	+		Psest_2012	0.14	-0.5
2,129,732	+		Psest_2012	0.14	-0.7
2,129,733	-		Psest_2012	0.14	+0.1
2,129,733	-		Psest_2012	0.14	+0.4
2,129,857	+		Psest_2012	0.25	-0.3
2,129,858	-		Psest_2012	0.25	+0.4
2,130,228	+		Psest_2012	0.59	+0.8
2,130,228	+		Psest_2012	0.59	-0.6
2,130,228	+		Psest_2012	0.59	-0.5
2,130,228	+		Psest_2012	0.59	+1.5
2,130,267	+		Psest_2012	0.62	+2.9
2,130,267	+		Psest_2012	0.62	-0.7
2,130,267	+		Psest_2012	0.62	+1.6
2,130,267	+		Psest_2012	0.62	+1.3
2,130,267	+		Psest_2012	0.62	+1.1
2,130,267	+		Psest_2012	0.62	-0.4
2,130,379	+		Psest_2012	0.73	-0.4
2,130,379	+		Psest_2012	0.73	-0.1
2,130,380	-		Psest_2012	0.73	-0.8
2,130,380	-		Psest_2012	0.73	-1.6