Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0732

Experiment: benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0731 and Psest_0732 are separated by 154 nucleotidesPsest_0732 and Psest_0733 overlap by 4 nucleotides Psest_0731: Psest_0731 - Serine/threonine protein kinase involved in cell cycle control, at 800,735 to 801,625 _0731 Psest_0732: Psest_0732 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 801,780 to 803,252 _0732 Psest_0733: Psest_0733 - Cation/multidrug efflux pump, at 803,249 to 806,293 _0733 Position (kb) 801 802 803 804Strain fitness (log2 ratio) -2 -1 0 1 2 3at 800.826 kb on + strand, within Psest_0731at 800.826 kb on + strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.870 kb on + strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.912 kb on + strand, within Psest_0731at 800.938 kb on + strand, within Psest_0731at 800.939 kb on - strand, within Psest_0731at 800.939 kb on - strand, within Psest_0731at 801.240 kb on + strand, within Psest_0731at 801.240 kb on + strand, within Psest_0731at 801.368 kb on + strand, within Psest_0731at 801.369 kb on - strand, within Psest_0731at 801.689 kb on + strandat 801.690 kb on - strandat 801.856 kb on + strandat 801.856 kb on + strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 801.857 kb on - strandat 802.120 kb on + strand, within Psest_0732at 802.121 kb on - strand, within Psest_0732at 802.121 kb on - strand, within Psest_0732at 802.121 kb on - strand, within Psest_0732at 803.031 kb on + strand, within Psest_0732at 803.031 kb on + strand, within Psest_0732at 803.032 kb on - strand, within Psest_0732at 803.032 kb on - strand, within Psest_0732at 803.402 kb on + strandat 803.478 kb on - strandat 803.478 kb on - strandat 803.784 kb on + strand, within Psest_0733at 803.784 kb on + strand, within Psest_0733at 803.785 kb on - strand, within Psest_0733at 803.785 kb on - strand, within Psest_0733at 803.785 kb on - strand, within Psest_0733at 803.785 kb on - strand, within Psest_0733at 803.964 kb on + strand, within Psest_0733at 803.965 kb on - strand, within Psest_0733at 804.221 kb on + strand, within Psest_0733at 804.221 kb on + strand, within Psest_0733

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml
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800,826 + Psest_0731 0.10 +0.6
800,826 + Psest_0731 0.10 -0.8
800,827 - Psest_0731 0.10 +1.2
800,827 - Psest_0731 0.10 +1.1
800,827 - Psest_0731 0.10 +0.7
800,827 - Psest_0731 0.10 -1.7
800,827 - Psest_0731 0.10 +0.0
800,827 - Psest_0731 0.10 +0.3
800,827 - Psest_0731 0.10 +0.4
800,827 - Psest_0731 0.10 -0.9
800,827 - Psest_0731 0.10 -0.5
800,828 + Psest_0731 0.10 +0.6
800,828 + Psest_0731 0.10 -0.0
800,828 + Psest_0731 0.10 -2.6
800,828 + Psest_0731 0.10 +0.4
800,828 + Psest_0731 0.10 -0.6
800,828 + Psest_0731 0.10 +2.0
800,828 + Psest_0731 0.10 +1.6
800,828 + Psest_0731 0.10 -1.7
800,828 + Psest_0731 0.10 +0.0
800,828 + Psest_0731 0.10 -1.0
800,828 + Psest_0731 0.10 +0.6
800,828 + Psest_0731 0.10 +1.1
800,828 + Psest_0731 0.10 -1.0
800,828 + Psest_0731 0.10 +0.8
800,828 + Psest_0731 0.10 +0.8
800,828 + Psest_0731 0.10 -1.2
800,828 + Psest_0731 0.10 -1.6
800,828 + Psest_0731 0.10 -0.4
800,828 + Psest_0731 0.10 -0.2
800,828 + Psest_0731 0.10 +0.8
800,828 + Psest_0731 0.10 -0.9
800,829 - Psest_0731 0.11 -1.4
800,829 - Psest_0731 0.11 -0.6
800,829 - Psest_0731 0.11 +0.6
800,829 - Psest_0731 0.11 -0.6
800,829 - Psest_0731 0.11 -0.9
800,829 - Psest_0731 0.11 -1.3
800,829 - Psest_0731 0.11 -2.3
800,829 - Psest_0731 0.11 +2.6
800,829 - Psest_0731 0.11 -0.7
800,829 - Psest_0731 0.11 -0.2
800,829 - Psest_0731 0.11 +0.9
800,829 - Psest_0731 0.11 +1.7
800,829 - Psest_0731 0.11 +0.9
800,829 - Psest_0731 0.11 -0.4
800,829 - Psest_0731 0.11 +0.0
800,829 - Psest_0731 0.11 +0.1
800,829 - Psest_0731 0.11 +1.1
800,829 - Psest_0731 0.11 +0.3
800,829 - Psest_0731 0.11 -0.5
800,829 - Psest_0731 0.11 -1.9
800,829 - Psest_0731 0.11 +0.5
800,829 - Psest_0731 0.11 -2.3
800,870 + Psest_0731 0.15 -0.3
800,871 - Psest_0731 0.15 -0.6
800,871 - Psest_0731 0.15 +2.6
800,871 - Psest_0731 0.15 +0.4
800,871 - Psest_0731 0.15 -1.2
800,912 + Psest_0731 0.20 +0.7
800,938 + Psest_0731 0.23 -0.5
800,939 - Psest_0731 0.23 -0.1
800,939 - Psest_0731 0.23 +0.5
801,240 + Psest_0731 0.57 +0.5
801,240 + Psest_0731 0.57 -0.8
801,368 + Psest_0731 0.71 +1.3
801,369 - Psest_0731 0.71 +0.5
801,689 + -0.6
801,690 - +0.6
801,856 + +2.3
801,856 + +0.7
801,857 - +0.2
801,857 - -0.2
801,857 - -0.6
801,857 - -0.7
801,857 - -0.4
801,857 - +0.7
801,857 - -0.6
801,857 - -0.4
802,120 + Psest_0732 0.23 +0.8
802,121 - Psest_0732 0.23 +1.1
802,121 - Psest_0732 0.23 +0.7
802,121 - Psest_0732 0.23 +2.4
803,031 + Psest_0732 0.85 +2.8
803,031 + Psest_0732 0.85 -0.5
803,032 - Psest_0732 0.85 +0.4
803,032 - Psest_0732 0.85 +0.8
803,402 + +1.6
803,478 - -0.0
803,478 - -2.0
803,784 + Psest_0733 0.18 +0.4
803,784 + Psest_0733 0.18 -1.3
803,785 - Psest_0733 0.18 -0.2
803,785 - Psest_0733 0.18 -0.2
803,785 - Psest_0733 0.18 +1.0
803,785 - Psest_0733 0.18 -0.2
803,964 + Psest_0733 0.23 +0.3
803,965 - Psest_0733 0.24 -1.2
804,221 + Psest_0733 0.32 -1.0
804,221 + Psest_0733 0.32 -0.2

Or see this region's nucleotide sequence