Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3566

Experiment: benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3565 and Psest_3566 are separated by 1 nucleotidesPsest_3566 and Psest_3567 overlap by 1 nucleotidesPsest_3567 and Psest_3568 are separated by 11 nucleotidesPsest_3568 and Psest_3569 overlap by 8 nucleotides Psest_3565: Psest_3565 - hypothetical protein, at 3,740,396 to 3,741,487 _3565 Psest_3566: Psest_3566 - TonB family C-terminal domain, at 3,741,489 to 3,742,202 _3566 Psest_3567: Psest_3567 - Biopolymer transport protein, at 3,742,202 to 3,742,615 _3567 Psest_3568: Psest_3568 - Biopolymer transport proteins, at 3,742,627 to 3,743,172 _3568 Psest_3569: Psest_3569 - Biopolymer transport proteins, at 3,743,165 to 3,744,511 _3569 Position (kb) 3741 3742 3743Strain fitness (log2 ratio) -2 -1 0 1at 3741.067 kb on - strand, within Psest_3565at 3741.195 kb on - strand, within Psest_3565at 3741.195 kb on - strand, within Psest_3565

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml
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3,741,067 - Psest_3565 0.61 -1.6
3,741,195 - Psest_3565 0.73 -2.7
3,741,195 - Psest_3565 0.73 -1.7

Or see this region's nucleotide sequence