Experiment: benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0022 and Psest_0023 are separated by 55 nucleotides Psest_0023 and Psest_0024 are separated by 148 nucleotides Psest_0024 and Psest_0025 are separated by 87 nucleotides
Psest_0022: Psest_0022 - methionyl-tRNA formyltransferase, at 23,022 to 23,966
_0022
Psest_0023: Psest_0023 - peptide deformylase, at 24,022 to 24,528
_0023
Psest_0024: Psest_0024 - LysM domain., at 24,677 to 25,702
_0024
Psest_0025: Psest_0025 - DNA protecting protein DprA, at 25,790 to 26,887
_0025
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 24.529 kb on - strand at 24.529 kb on - strand at 24.555 kb on - strand at 24.555 kb on - strand at 24.574 kb on - strand at 24.574 kb on - strand at 24.574 kb on - strand at 24.659 kb on - strand at 24.659 kb on - strand at 24.659 kb on - strand at 24.659 kb on - strand at 24.659 kb on - strand at 24.662 kb on - strand at 24.662 kb on - strand at 24.662 kb on - strand at 24.768 kb on - strand at 24.769 kb on + strand at 24.769 kb on + strand at 24.769 kb on + strand at 24.769 kb on + strand at 24.884 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.936 kb on + strand, within Psest_0024 at 24.937 kb on - strand, within Psest_0024 at 24.988 kb on + strand, within Psest_0024 at 24.988 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.098 kb on - strand, within Psest_0024 at 25.098 kb on - strand, within Psest_0024 at 25.151 kb on + strand, within Psest_0024 at 25.151 kb on + strand, within Psest_0024 at 25.152 kb on - strand, within Psest_0024 at 25.152 kb on - strand, within Psest_0024 at 25.214 kb on + strand, within Psest_0024 at 25.214 kb on + strand, within Psest_0024 at 25.214 kb on + strand, within Psest_0024 at 25.214 kb on + strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.532 kb on + strand, within Psest_0024 at 25.532 kb on + strand, within Psest_0024 at 25.533 kb on - strand, within Psest_0024 at 25.625 kb on + strand at 25.625 kb on + strand at 25.625 kb on + strand at 25.625 kb on + strand at 25.640 kb on + strand at 25.640 kb on + strand at 25.641 kb on - strand at 25.766 kb on + strand at 25.766 kb on + strand at 25.767 kb on - strand at 25.767 kb on - strand at 25.781 kb on + strand at 26.060 kb on + strand, within Psest_0025 at 26.434 kb on + strand, within Psest_0025 at 26.435 kb on - strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.4 mg/ml remove 24,529 - -1.1 24,529 - +1.4 24,555 - -0.2 24,555 - +0.3 24,574 - +1.0 24,574 - -0.5 24,574 - +0.4 24,659 - +0.6 24,659 - -1.8 24,659 - -0.2 24,659 - +0.7 24,659 - +0.1 24,662 - -3.4 24,662 - -2.2 24,662 - +0.6 24,768 - -1.8 24,769 + +0.7 24,769 + -0.8 24,769 + -0.1 24,769 + -0.0 24,884 + Psest_0024 0.20 -0.1 24,911 + Psest_0024 0.23 +0.3 24,911 + Psest_0024 0.23 -0.9 24,911 + Psest_0024 0.23 -1.1 24,911 + Psest_0024 0.23 +0.9 24,911 + Psest_0024 0.23 -0.4 24,911 + Psest_0024 0.23 +1.1 24,911 + Psest_0024 0.23 +0.2 24,911 + Psest_0024 0.23 +1.1 24,911 + Psest_0024 0.23 +0.3 24,911 + Psest_0024 0.23 +0.5 24,911 + Psest_0024 0.23 +1.6 24,912 - Psest_0024 0.23 +0.2 24,912 - Psest_0024 0.23 -0.1 24,912 - Psest_0024 0.23 +0.3 24,912 - Psest_0024 0.23 -0.3 24,912 - Psest_0024 0.23 +1.1 24,912 - Psest_0024 0.23 +1.1 24,912 - Psest_0024 0.23 +1.5 24,912 - Psest_0024 0.23 +1.4 24,912 - Psest_0024 0.23 +0.5 24,912 - Psest_0024 0.23 +2.8 24,912 - Psest_0024 0.23 -0.5 24,912 - Psest_0024 0.23 -1.2 24,936 + Psest_0024 0.25 -1.1 24,937 - Psest_0024 0.25 -0.4 24,988 + Psest_0024 0.30 +1.2 24,988 + Psest_0024 0.30 -0.6 25,097 + Psest_0024 0.41 -0.7 25,097 + Psest_0024 0.41 +0.3 25,097 + Psest_0024 0.41 +2.6 25,097 + Psest_0024 0.41 +0.3 25,097 + Psest_0024 0.41 +0.6 25,098 - Psest_0024 0.41 -2.3 25,098 - Psest_0024 0.41 -0.4 25,151 + Psest_0024 0.46 +4.6 25,151 + Psest_0024 0.46 -0.0 25,152 - Psest_0024 0.46 +1.1 25,152 - Psest_0024 0.46 +0.0 25,214 + Psest_0024 0.52 -2.0 25,214 + Psest_0024 0.52 -1.1 25,214 + Psest_0024 0.52 +1.9 25,214 + Psest_0024 0.52 +0.1 25,215 - Psest_0024 0.52 -0.1 25,215 - Psest_0024 0.52 -1.2 25,215 - Psest_0024 0.52 -0.6 25,215 - Psest_0024 0.52 +1.8 25,215 - Psest_0024 0.52 +1.0 25,215 - Psest_0024 0.52 -0.2 25,215 - Psest_0024 0.52 -0.3 25,532 + Psest_0024 0.83 +2.4 25,532 + Psest_0024 0.83 -0.2 25,533 - Psest_0024 0.83 -2.0 25,625 + -2.3 25,625 + +0.7 25,625 + +0.1 25,625 + -1.4 25,640 + +2.5 25,640 + +1.5 25,641 - +0.0 25,766 + -0.4 25,766 + +0.4 25,767 - +1.5 25,767 - -0.8 25,781 + -1.2 26,060 + Psest_0025 0.25 +1.3 26,434 + Psest_0025 0.59 +0.2 26,435 - Psest_0025 0.59 +0.8 26,558 + Psest_0025 0.70 +0.7 26,558 + Psest_0025 0.70 +0.3 26,558 + Psest_0025 0.70 +0.4 26,558 + Psest_0025 0.70 +0.3 26,558 + Psest_0025 0.70 +0.8 26,558 + Psest_0025 0.70 -0.5 26,558 + Psest_0025 0.70 -1.3 26,559 - Psest_0025 0.70 +0.3 26,559 - Psest_0025 0.70 +0.3 26,559 - Psest_0025 0.70 -0.5 26,559 - Psest_0025 0.70 +0.1 26,559 - Psest_0025 0.70 +1.0
Or see this region's nucleotide sequence