Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1076

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1074 and Psest_1075 are separated by 409 nucleotidesPsest_1075 and Psest_1076 are separated by 77 nucleotidesPsest_1076 and Psest_1077 are separated by 257 nucleotidesPsest_1077 and Psest_1078 are separated by 4 nucleotides Psest_1074: Psest_1074 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 1,162,493 to 1,163,578 _1074 Psest_1075: Psest_1075 - Predicted transcriptional regulators, at 1,163,988 to 1,164,386 _1075 Psest_1076: Psest_1076 - acetyl-CoA acetyltransferases, at 1,164,464 to 1,165,645 _1076 Psest_1077: Psest_1077 - acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) (from data), at 1,165,903 to 1,166,532 _1077 Psest_1078: Psest_1078 - acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (from data), at 1,166,537 to 1,167,232 _1078 Position (kb) 1164 1165 1166Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1163.969 kb on + strandat 1163.970 kb on - strandat 1164.262 kb on + strand, within Psest_1075at 1164.262 kb on + strand, within Psest_1075at 1164.262 kb on + strand, within Psest_1075at 1164.262 kb on + strand, within Psest_1075at 1164.263 kb on - strand, within Psest_1075at 1164.263 kb on - strand, within Psest_1075at 1164.263 kb on - strand, within Psest_1075at 1164.263 kb on - strand, within Psest_1075at 1164.263 kb on - strand, within Psest_1075at 1164.263 kb on - strand, within Psest_1075at 1164.263 kb on - strand, within Psest_1075at 1164.313 kb on + strand, within Psest_1075at 1164.314 kb on - strand, within Psest_1075at 1164.365 kb on + strandat 1164.365 kb on + strandat 1164.365 kb on + strandat 1164.365 kb on + strandat 1164.366 kb on - strandat 1164.366 kb on - strandat 1164.370 kb on + strandat 1164.370 kb on + strandat 1164.370 kb on + strandat 1164.370 kb on + strandat 1164.370 kb on + strandat 1164.370 kb on + strandat 1164.370 kb on + strandat 1164.370 kb on + strandat 1164.370 kb on + strandat 1164.370 kb on + strandat 1164.370 kb on + strandat 1164.370 kb on + strandat 1164.370 kb on + strandat 1164.371 kb on - strandat 1164.488 kb on + strandat 1165.143 kb on + strand, within Psest_1076at 1165.143 kb on + strand, within Psest_1076at 1165.144 kb on - strand, within Psest_1076at 1165.182 kb on + strand, within Psest_1076at 1165.278 kb on + strand, within Psest_1076at 1165.278 kb on + strand, within Psest_1076at 1165.279 kb on - strand, within Psest_1076at 1165.279 kb on - strand, within Psest_1076at 1165.279 kb on - strand, within Psest_1076at 1165.279 kb on - strand, within Psest_1076at 1165.279 kb on - strand, within Psest_1076at 1165.279 kb on - strand, within Psest_1076at 1165.625 kb on + strandat 1165.786 kb on + strandat 1165.786 kb on + strandat 1165.787 kb on - strandat 1165.788 kb on + strandat 1166.429 kb on + strand, within Psest_1077at 1166.429 kb on + strand, within Psest_1077at 1166.429 kb on + strand, within Psest_1077at 1166.429 kb on + strand, within Psest_1077at 1166.429 kb on + strand, within Psest_1077at 1166.429 kb on + strand, within Psest_1077at 1166.429 kb on + strand, within Psest_1077at 1166.429 kb on + strand, within Psest_1077at 1166.429 kb on + strand, within Psest_1077at 1166.429 kb on + strand, within Psest_1077at 1166.429 kb on + strand, within Psest_1077at 1166.429 kb on + strand, within Psest_1077at 1166.429 kb on + strand, within Psest_1077at 1166.430 kb on - strand, within Psest_1077at 1166.430 kb on - strand, within Psest_1077at 1166.430 kb on - strand, within Psest_1077at 1166.430 kb on - strand, within Psest_1077at 1166.430 kb on - strand, within Psest_1077at 1166.430 kb on - strand, within Psest_1077at 1166.430 kb on - strand, within Psest_1077at 1166.471 kb on + strandat 1166.471 kb on + strandat 1166.471 kb on + strandat 1166.472 kb on - strandat 1166.472 kb on - strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.604 kb on + strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strandat 1166.605 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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1,163,969 + -0.1
1,163,970 - -0.4
1,164,262 + Psest_1075 0.69 -1.6
1,164,262 + Psest_1075 0.69 -1.1
1,164,262 + Psest_1075 0.69 -0.9
1,164,262 + Psest_1075 0.69 -0.2
1,164,263 - Psest_1075 0.69 +1.1
1,164,263 - Psest_1075 0.69 -0.2
1,164,263 - Psest_1075 0.69 +1.4
1,164,263 - Psest_1075 0.69 +0.1
1,164,263 - Psest_1075 0.69 -1.1
1,164,263 - Psest_1075 0.69 -0.5
1,164,263 - Psest_1075 0.69 -0.6
1,164,313 + Psest_1075 0.81 -0.1
1,164,314 - Psest_1075 0.82 +1.3
1,164,365 + +1.0
1,164,365 + -0.5
1,164,365 + -1.1
1,164,365 + -0.5
1,164,366 - -0.4
1,164,366 - -1.8
1,164,370 + -3.3
1,164,370 + +0.3
1,164,370 + +0.4
1,164,370 + +0.4
1,164,370 + -0.9
1,164,370 + +0.2
1,164,370 + +3.3
1,164,370 + +0.2
1,164,370 + +0.4
1,164,370 + -0.7
1,164,370 + -0.3
1,164,370 + -0.8
1,164,370 + -1.8
1,164,371 - +1.4
1,164,488 + -1.2
1,165,143 + Psest_1076 0.57 -1.5
1,165,143 + Psest_1076 0.57 -2.2
1,165,144 - Psest_1076 0.58 -0.6
1,165,182 + Psest_1076 0.61 -0.5
1,165,278 + Psest_1076 0.69 -1.4
1,165,278 + Psest_1076 0.69 +0.9
1,165,279 - Psest_1076 0.69 -1.1
1,165,279 - Psest_1076 0.69 +0.2
1,165,279 - Psest_1076 0.69 -0.5
1,165,279 - Psest_1076 0.69 +3.0
1,165,279 - Psest_1076 0.69 +0.1
1,165,279 - Psest_1076 0.69 +0.4
1,165,625 + +0.1
1,165,786 + +1.5
1,165,786 + +0.3
1,165,787 - -3.1
1,165,788 + -0.7
1,166,429 + Psest_1077 0.83 -1.5
1,166,429 + Psest_1077 0.83 -2.2
1,166,429 + Psest_1077 0.83 +1.1
1,166,429 + Psest_1077 0.83 -0.6
1,166,429 + Psest_1077 0.83 -0.9
1,166,429 + Psest_1077 0.83 -0.7
1,166,429 + Psest_1077 0.83 -1.6
1,166,429 + Psest_1077 0.83 +0.8
1,166,429 + Psest_1077 0.83 +1.2
1,166,429 + Psest_1077 0.83 -1.0
1,166,429 + Psest_1077 0.83 +0.5
1,166,429 + Psest_1077 0.83 +1.1
1,166,429 + Psest_1077 0.83 +1.4
1,166,430 - Psest_1077 0.84 +0.8
1,166,430 - Psest_1077 0.84 -3.4
1,166,430 - Psest_1077 0.84 -1.1
1,166,430 - Psest_1077 0.84 +0.1
1,166,430 - Psest_1077 0.84 +0.4
1,166,430 - Psest_1077 0.84 +0.2
1,166,430 - Psest_1077 0.84 +1.9
1,166,471 + +0.6
1,166,471 + -1.4
1,166,471 + +0.2
1,166,472 - -2.0
1,166,472 - +0.1
1,166,604 + -1.1
1,166,604 + +0.0
1,166,604 + +0.2
1,166,604 + -2.7
1,166,604 + -2.0
1,166,604 + +0.5
1,166,604 + +1.3
1,166,604 + -0.1
1,166,604 + +0.6
1,166,604 + +0.6
1,166,604 + -1.6
1,166,604 + -1.8
1,166,604 + -1.0
1,166,604 + -2.4
1,166,604 + +0.1
1,166,604 + +0.6
1,166,604 + -0.7
1,166,604 + +0.2
1,166,604 + -1.2
1,166,604 + +0.4
1,166,604 + +0.8
1,166,604 + +0.4
1,166,604 + +0.0
1,166,604 + +1.6
1,166,604 + -1.2
1,166,604 + +0.6
1,166,605 - -1.3
1,166,605 - -1.8
1,166,605 - -1.5
1,166,605 - -1.7
1,166,605 - -0.3
1,166,605 - -2.7
1,166,605 - +0.6
1,166,605 - -0.2
1,166,605 - +1.0
1,166,605 - +0.8
1,166,605 - +0.1
1,166,605 - -0.9
1,166,605 - -1.5
1,166,605 - +0.1
1,166,605 - -1.0
1,166,605 - -1.4
1,166,605 - +0.3
1,166,605 - +0.0
1,166,605 - +0.4

Or see this region's nucleotide sequence