Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3843

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3842 and Psest_3843 are separated by 108 nucleotidesPsest_3843 and Psest_3844 are separated by 43 nucleotides Psest_3842: Psest_3842 - Transcriptional regulators, at 4,014,001 to 4,014,774 _3842 Psest_3843: Psest_3843 - 4-hydroxybenzoate synthetase (chorismate lyase), at 4,014,883 to 4,015,437 _3843 Psest_3844: Psest_3844 - 4-hydroxybenzoate polyprenyl transferase, proteobacterial, at 4,015,481 to 4,016,374 _3844 Position (kb) 4014 4015 4016Strain fitness (log2 ratio) -2 -1 0 1 2at 4013.942 kb on - strandat 4014.173 kb on + strand, within Psest_3842at 4014.296 kb on - strand, within Psest_3842at 4014.383 kb on + strand, within Psest_3842at 4014.577 kb on + strand, within Psest_3842at 4014.684 kb on + strand, within Psest_3842at 4014.803 kb on + strandat 4014.804 kb on - strandat 4014.861 kb on + strandat 4014.862 kb on - strandat 4014.862 kb on - strandat 4014.973 kb on + strand, within Psest_3843at 4014.973 kb on + strand, within Psest_3843at 4014.974 kb on - strand, within Psest_3843at 4014.974 kb on - strand, within Psest_3843at 4014.974 kb on - strand, within Psest_3843at 4014.974 kb on - strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.129 kb on + strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.130 kb on - strand, within Psest_3843at 4015.394 kb on + strandat 4015.394 kb on + strandat 4015.394 kb on + strandat 4015.394 kb on + strandat 4015.394 kb on + strandat 4015.394 kb on + strandat 4015.394 kb on + strandat 4015.395 kb on - strandat 4015.395 kb on - strandat 4015.395 kb on - strandat 4015.395 kb on - strandat 4015.395 kb on - strandat 4015.484 kb on + strandat 4015.484 kb on + strandat 4015.484 kb on + strandat 4015.484 kb on + strandat 4015.484 kb on + strandat 4016.372 kb on + strandat 4016.392 kb on + strandat 4016.392 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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4,013,942 - -0.2
4,014,173 + Psest_3842 0.22 +2.3
4,014,296 - Psest_3842 0.38 -1.1
4,014,383 + Psest_3842 0.49 -1.8
4,014,577 + Psest_3842 0.74 -0.5
4,014,684 + Psest_3842 0.88 -0.3
4,014,803 + +1.5
4,014,804 - -1.4
4,014,861 + -1.3
4,014,862 - +0.5
4,014,862 - +0.3
4,014,973 + Psest_3843 0.16 -0.5
4,014,973 + Psest_3843 0.16 -1.6
4,014,974 - Psest_3843 0.16 -1.2
4,014,974 - Psest_3843 0.16 +1.1
4,014,974 - Psest_3843 0.16 -0.5
4,014,974 - Psest_3843 0.16 +0.3
4,015,129 + Psest_3843 0.44 -0.9
4,015,129 + Psest_3843 0.44 -0.3
4,015,129 + Psest_3843 0.44 +1.5
4,015,129 + Psest_3843 0.44 -0.6
4,015,129 + Psest_3843 0.44 +1.4
4,015,129 + Psest_3843 0.44 +0.7
4,015,129 + Psest_3843 0.44 +0.5
4,015,129 + Psest_3843 0.44 -0.6
4,015,129 + Psest_3843 0.44 +0.1
4,015,129 + Psest_3843 0.44 -0.7
4,015,129 + Psest_3843 0.44 +0.6
4,015,129 + Psest_3843 0.44 -0.4
4,015,129 + Psest_3843 0.44 +0.5
4,015,130 - Psest_3843 0.45 +2.7
4,015,130 - Psest_3843 0.45 -1.1
4,015,130 - Psest_3843 0.45 +2.1
4,015,130 - Psest_3843 0.45 -0.3
4,015,130 - Psest_3843 0.45 +1.6
4,015,130 - Psest_3843 0.45 +1.8
4,015,130 - Psest_3843 0.45 +1.3
4,015,130 - Psest_3843 0.45 +2.4
4,015,130 - Psest_3843 0.45 +1.0
4,015,130 - Psest_3843 0.45 +0.2
4,015,130 - Psest_3843 0.45 +1.4
4,015,130 - Psest_3843 0.45 +0.2
4,015,130 - Psest_3843 0.45 +1.6
4,015,394 + +0.1
4,015,394 + +0.5
4,015,394 + -1.9
4,015,394 + -0.7
4,015,394 + +1.2
4,015,394 + +2.5
4,015,394 + +0.4
4,015,395 - +0.8
4,015,395 - +0.6
4,015,395 - +0.7
4,015,395 - +1.5
4,015,395 - +0.5
4,015,484 + +0.7
4,015,484 + +0.8
4,015,484 + -0.2
4,015,484 + +0.9
4,015,484 + +0.7
4,016,372 + -0.2
4,016,392 + +0.4
4,016,392 + +0.2

Or see this region's nucleotide sequence