Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3545

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3543 and Psest_3544 overlap by 4 nucleotidesPsest_3544 and Psest_3545 are separated by 121 nucleotidesPsest_3545 and Psest_3546 are separated by 86 nucleotidesPsest_3546 and Psest_3547 are separated by 52 nucleotides Psest_3543: Psest_3543 - hypothetical protein, at 3,724,344 to 3,724,751 _3543 Psest_3544: Psest_3544 - GTP cyclohydrolase II, at 3,724,748 to 3,725,365 _3544 Psest_3545: Psest_3545 - clan AA aspartic protease, TIGR02281 family, at 3,725,487 to 3,726,134 _3545 Psest_3546: Psest_3546 - Phosphatidylglycerophosphatase A and related proteins, at 3,726,221 to 3,726,718 _3546 Psest_3547: Psest_3547 - thiamine-monophosphate kinase, at 3,726,771 to 3,727,733 _3547 Position (kb) 3725 3726 3727Strain fitness (log2 ratio) -2 -1 0 1 2at 3724.701 kb on - strand, within Psest_3543at 3724.701 kb on - strand, within Psest_3543at 3724.701 kb on - strand, within Psest_3543at 3725.401 kb on + strandat 3725.402 kb on - strandat 3725.402 kb on - strandat 3725.445 kb on + strandat 3725.446 kb on - strandat 3725.446 kb on - strandat 3725.488 kb on + strandat 3725.489 kb on - strandat 3725.765 kb on + strand, within Psest_3545at 3725.878 kb on + strand, within Psest_3545at 3725.879 kb on - strand, within Psest_3545at 3725.908 kb on + strand, within Psest_3545at 3725.908 kb on + strand, within Psest_3545at 3725.908 kb on + strand, within Psest_3545at 3725.909 kb on - strand, within Psest_3545at 3725.909 kb on - strand, within Psest_3545at 3726.129 kb on - strandat 3726.138 kb on + strandat 3726.138 kb on + strandat 3726.139 kb on - strandat 3726.139 kb on - strandat 3726.139 kb on - strandat 3726.139 kb on - strandat 3726.139 kb on - strandat 3726.139 kb on - strandat 3726.590 kb on + strand, within Psest_3546at 3726.591 kb on - strand, within Psest_3546

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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3,724,701 - Psest_3543 0.88 +1.5
3,724,701 - Psest_3543 0.88 -0.9
3,724,701 - Psest_3543 0.88 +0.1
3,725,401 + +1.1
3,725,402 - +0.3
3,725,402 - -0.9
3,725,445 + -0.1
3,725,446 - +0.3
3,725,446 - -2.5
3,725,488 + -2.2
3,725,489 - +0.9
3,725,765 + Psest_3545 0.43 +0.8
3,725,878 + Psest_3545 0.60 +0.8
3,725,879 - Psest_3545 0.60 -2.0
3,725,908 + Psest_3545 0.65 +2.3
3,725,908 + Psest_3545 0.65 +0.1
3,725,908 + Psest_3545 0.65 +0.6
3,725,909 - Psest_3545 0.65 +0.7
3,725,909 - Psest_3545 0.65 +1.2
3,726,129 - -1.1
3,726,138 + +0.5
3,726,138 + +0.2
3,726,139 - -0.2
3,726,139 - +1.3
3,726,139 - -0.5
3,726,139 - +1.1
3,726,139 - +0.8
3,726,139 - +1.7
3,726,590 + Psest_3546 0.74 -2.1
3,726,591 - Psest_3546 0.74 +1.5

Or see this region's nucleotide sequence