Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3136

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3135 and Psest_3136 are separated by 16 nucleotidesPsest_3136 and Psest_3137 are separated by 30 nucleotides Psest_3135: Psest_3135 - ABC-type uncharacterized transport system, permease component, at 3,310,648 to 3,311,448 _3135 Psest_3136: Psest_3136 - Putative Mg2+ and Co2+ transporter CorB, at 3,311,465 to 3,312,751 _3136 Psest_3137: Psest_3137 - phosphoribosylglycinamide formyltransferase 2, at 3,312,782 to 3,313,963 _3137 Position (kb) 3311 3312 3313Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3310.571 kb on - strandat 3310.575 kb on - strandat 3310.647 kb on + strandat 3311.443 kb on - strandat 3311.578 kb on - strandat 3311.784 kb on + strand, within Psest_3136at 3311.784 kb on + strand, within Psest_3136at 3311.784 kb on + strand, within Psest_3136at 3312.042 kb on + strand, within Psest_3136at 3312.153 kb on + strand, within Psest_3136at 3312.153 kb on + strand, within Psest_3136at 3312.154 kb on - strand, within Psest_3136at 3312.154 kb on - strand, within Psest_3136at 3312.300 kb on - strand, within Psest_3136at 3312.300 kb on - strand, within Psest_3136at 3312.378 kb on + strand, within Psest_3136at 3312.379 kb on - strand, within Psest_3136at 3312.386 kb on + strand, within Psest_3136at 3312.524 kb on + strand, within Psest_3136at 3312.524 kb on + strand, within Psest_3136at 3312.524 kb on + strand, within Psest_3136at 3312.525 kb on - strand, within Psest_3136at 3312.525 kb on - strand, within Psest_3136at 3312.785 kb on + strandat 3312.786 kb on - strandat 3312.786 kb on - strandat 3312.786 kb on - strandat 3313.094 kb on - strand, within Psest_3137at 3313.106 kb on - strand, within Psest_3137at 3313.276 kb on - strand, within Psest_3137at 3313.658 kb on + strand, within Psest_3137at 3313.668 kb on + strand, within Psest_3137at 3313.669 kb on - strand, within Psest_3137at 3313.731 kb on + strand, within Psest_3137at 3313.731 kb on + strand, within Psest_3137at 3313.731 kb on + strand, within Psest_3137at 3313.732 kb on - strand, within Psest_3137at 3313.732 kb on - strand, within Psest_3137at 3313.732 kb on - strand, within Psest_3137at 3313.732 kb on - strand, within Psest_3137

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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3,310,571 - -0.9
3,310,575 - +0.1
3,310,647 + +1.0
3,311,443 - +0.4
3,311,578 - -0.2
3,311,784 + Psest_3136 0.25 +1.2
3,311,784 + Psest_3136 0.25 +0.4
3,311,784 + Psest_3136 0.25 +0.2
3,312,042 + Psest_3136 0.45 +0.9
3,312,153 + Psest_3136 0.53 +1.6
3,312,153 + Psest_3136 0.53 +0.9
3,312,154 - Psest_3136 0.54 +0.8
3,312,154 - Psest_3136 0.54 +1.7
3,312,300 - Psest_3136 0.65 +1.4
3,312,300 - Psest_3136 0.65 +1.6
3,312,378 + Psest_3136 0.71 +2.2
3,312,379 - Psest_3136 0.71 -0.4
3,312,386 + Psest_3136 0.72 +0.3
3,312,524 + Psest_3136 0.82 +2.1
3,312,524 + Psest_3136 0.82 +0.6
3,312,524 + Psest_3136 0.82 +2.8
3,312,525 - Psest_3136 0.82 +1.8
3,312,525 - Psest_3136 0.82 +1.9
3,312,785 + +0.5
3,312,786 - -2.8
3,312,786 - +0.1
3,312,786 - -1.4
3,313,094 - Psest_3137 0.26 -0.3
3,313,106 - Psest_3137 0.27 -0.3
3,313,276 - Psest_3137 0.42 +0.9
3,313,658 + Psest_3137 0.74 +0.4
3,313,668 + Psest_3137 0.75 -0.6
3,313,669 - Psest_3137 0.75 +0.3
3,313,731 + Psest_3137 0.80 -1.2
3,313,731 + Psest_3137 0.80 +0.2
3,313,731 + Psest_3137 0.80 -1.3
3,313,732 - Psest_3137 0.80 +0.1
3,313,732 - Psest_3137 0.80 -0.0
3,313,732 - Psest_3137 0.80 +0.8
3,313,732 - Psest_3137 0.80 +1.1

Or see this region's nucleotide sequence