Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3115

Experiment: Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3114 and Psest_3115 are separated by 103 nucleotidesPsest_3115 and Psest_3116 overlap by 4 nucleotidesPsest_3116 and Psest_3117 overlap by 4 nucleotides Psest_3114: Psest_3114 - electron transport complex, RnfABCDGE type, C subunit, at 3,290,502 to 3,293,180 _3114 Psest_3115: Psest_3115 - electron transport complex, RnfABCDGE type, D subunit, at 3,293,284 to 3,294,312 _3115 Psest_3116: Psest_3116 - electron transport complex, RnfABCDGE type, G subunit, at 3,294,309 to 3,295,088 _3116 Psest_3117: Psest_3117 - electron transport complex, RnfABCDGE type, E subunit, at 3,295,085 to 3,295,798 _3117 Position (kb) 3293 3294 3295Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3293.000 kb on - strandat 3293.117 kb on - strandat 3293.166 kb on + strandat 3293.247 kb on - strandat 3293.665 kb on + strand, within Psest_3115at 3293.807 kb on + strand, within Psest_3115at 3293.807 kb on + strand, within Psest_3115at 3293.807 kb on + strand, within Psest_3115at 3293.807 kb on + strand, within Psest_3115at 3293.807 kb on + strand, within Psest_3115at 3293.807 kb on + strand, within Psest_3115at 3293.808 kb on - strand, within Psest_3115at 3293.808 kb on - strand, within Psest_3115at 3293.808 kb on - strand, within Psest_3115at 3293.808 kb on - strand, within Psest_3115at 3293.808 kb on - strand, within Psest_3115at 3293.984 kb on + strand, within Psest_3115at 3293.984 kb on + strand, within Psest_3115at 3293.984 kb on + strand, within Psest_3115at 3293.984 kb on + strand, within Psest_3115at 3293.985 kb on - strand, within Psest_3115at 3293.985 kb on - strand, within Psest_3115at 3293.985 kb on - strand, within Psest_3115at 3293.985 kb on - strand, within Psest_3115at 3293.985 kb on - strand, within Psest_3115at 3294.154 kb on - strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.164 kb on - strand, within Psest_3115at 3294.164 kb on - strand, within Psest_3115at 3294.164 kb on - strand, within Psest_3115at 3294.164 kb on - strand, within Psest_3115at 3294.164 kb on - strand, within Psest_3115at 3294.164 kb on - strand, within Psest_3115at 3294.247 kb on + strandat 3294.250 kb on + strandat 3294.250 kb on + strandat 3294.250 kb on + strandat 3294.251 kb on - strandat 3294.251 kb on - strandat 3294.251 kb on - strandat 3294.251 kb on - strandat 3294.251 kb on - strandat 3294.251 kb on - strandat 3294.268 kb on + strandat 3294.268 kb on + strandat 3294.268 kb on + strandat 3294.428 kb on + strand, within Psest_3116at 3294.428 kb on + strand, within Psest_3116at 3294.458 kb on - strand, within Psest_3116at 3294.492 kb on + strand, within Psest_3116at 3294.492 kb on + strand, within Psest_3116at 3294.492 kb on + strand, within Psest_3116at 3294.492 kb on + strand, within Psest_3116at 3294.493 kb on - strand, within Psest_3116at 3294.493 kb on - strand, within Psest_3116at 3294.493 kb on - strand, within Psest_3116at 3294.493 kb on - strand, within Psest_3116at 3294.567 kb on + strand, within Psest_3116at 3294.567 kb on + strand, within Psest_3116at 3294.567 kb on + strand, within Psest_3116at 3294.567 kb on + strand, within Psest_3116at 3294.567 kb on + strand, within Psest_3116at 3294.567 kb on + strand, within Psest_3116at 3294.567 kb on + strand, within Psest_3116at 3294.567 kb on + strand, within Psest_3116at 3294.567 kb on + strand, within Psest_3116at 3294.568 kb on - strand, within Psest_3116at 3294.568 kb on - strand, within Psest_3116at 3294.568 kb on - strand, within Psest_3116at 3294.568 kb on - strand, within Psest_3116at 3294.568 kb on - strand, within Psest_3116at 3294.568 kb on - strand, within Psest_3116at 3294.568 kb on - strand, within Psest_3116at 3294.631 kb on - strand, within Psest_3116at 3294.900 kb on + strand, within Psest_3116at 3294.900 kb on + strand, within Psest_3116at 3294.901 kb on - strand, within Psest_3116

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
remove
3,293,000 - +0.6
3,293,117 - -2.5
3,293,166 + -1.3
3,293,247 - +0.4
3,293,665 + Psest_3115 0.37 +0.6
3,293,807 + Psest_3115 0.51 +2.4
3,293,807 + Psest_3115 0.51 +0.8
3,293,807 + Psest_3115 0.51 +0.8
3,293,807 + Psest_3115 0.51 +2.1
3,293,807 + Psest_3115 0.51 -0.4
3,293,807 + Psest_3115 0.51 -0.2
3,293,808 - Psest_3115 0.51 +1.9
3,293,808 - Psest_3115 0.51 +2.1
3,293,808 - Psest_3115 0.51 +1.0
3,293,808 - Psest_3115 0.51 +1.7
3,293,808 - Psest_3115 0.51 +1.7
3,293,984 + Psest_3115 0.68 +0.8
3,293,984 + Psest_3115 0.68 -1.2
3,293,984 + Psest_3115 0.68 -1.9
3,293,984 + Psest_3115 0.68 +2.4
3,293,985 - Psest_3115 0.68 +3.0
3,293,985 - Psest_3115 0.68 +1.4
3,293,985 - Psest_3115 0.68 +1.3
3,293,985 - Psest_3115 0.68 +2.1
3,293,985 - Psest_3115 0.68 +1.4
3,294,154 - Psest_3115 0.85 -0.2
3,294,163 + Psest_3115 0.85 +1.4
3,294,163 + Psest_3115 0.85 +2.1
3,294,163 + Psest_3115 0.85 +0.4
3,294,163 + Psest_3115 0.85 +1.4
3,294,163 + Psest_3115 0.85 +1.9
3,294,163 + Psest_3115 0.85 +2.4
3,294,163 + Psest_3115 0.85 +0.6
3,294,163 + Psest_3115 0.85 -0.8
3,294,164 - Psest_3115 0.86 +1.1
3,294,164 - Psest_3115 0.86 +0.5
3,294,164 - Psest_3115 0.86 +0.8
3,294,164 - Psest_3115 0.86 +2.3
3,294,164 - Psest_3115 0.86 +3.1
3,294,164 - Psest_3115 0.86 -0.9
3,294,247 + +0.4
3,294,250 + +1.4
3,294,250 + -0.9
3,294,250 + -0.2
3,294,251 - -0.4
3,294,251 - +3.0
3,294,251 - +1.6
3,294,251 - -0.1
3,294,251 - +1.4
3,294,251 - +1.4
3,294,268 + +2.6
3,294,268 + +0.1
3,294,268 + -1.1
3,294,428 + Psest_3116 0.15 +0.0
3,294,428 + Psest_3116 0.15 -0.3
3,294,458 - Psest_3116 0.19 +1.9
3,294,492 + Psest_3116 0.23 +2.0
3,294,492 + Psest_3116 0.23 +0.3
3,294,492 + Psest_3116 0.23 +0.3
3,294,492 + Psest_3116 0.23 +0.2
3,294,493 - Psest_3116 0.24 +0.6
3,294,493 - Psest_3116 0.24 +1.4
3,294,493 - Psest_3116 0.24 -1.3
3,294,493 - Psest_3116 0.24 +1.3
3,294,567 + Psest_3116 0.33 +0.8
3,294,567 + Psest_3116 0.33 +0.4
3,294,567 + Psest_3116 0.33 -0.6
3,294,567 + Psest_3116 0.33 -2.3
3,294,567 + Psest_3116 0.33 +0.3
3,294,567 + Psest_3116 0.33 -1.0
3,294,567 + Psest_3116 0.33 +1.7
3,294,567 + Psest_3116 0.33 +0.0
3,294,567 + Psest_3116 0.33 +1.7
3,294,568 - Psest_3116 0.33 +0.4
3,294,568 - Psest_3116 0.33 +1.1
3,294,568 - Psest_3116 0.33 +1.4
3,294,568 - Psest_3116 0.33 -0.9
3,294,568 - Psest_3116 0.33 +0.0
3,294,568 - Psest_3116 0.33 +0.4
3,294,568 - Psest_3116 0.33 -0.4
3,294,631 - Psest_3116 0.41 +1.6
3,294,900 + Psest_3116 0.76 +0.8
3,294,900 + Psest_3116 0.76 -0.1
3,294,901 - Psest_3116 0.76 +0.1

Or see this region's nucleotide sequence