Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3064

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3061 and Psest_3063 are separated by 163 nucleotidesPsest_3063 and Psest_3064 overlap by 4 nucleotidesPsest_3064 and Psest_3065 are separated by 127 nucleotidesPsest_3065 and Psest_3066 are separated by 76 nucleotides Psest_3061: Psest_3061 - hypothetical protein, at 3,240,152 to 3,240,922 _3061 Psest_3063: Psest_3063 - hypothetical protein, at 3,241,086 to 3,241,229 _3063 Psest_3064: Psest_3064 - hypothetical protein, at 3,241,226 to 3,241,441 _3064 Psest_3065: Psest_3065 - hypothetical protein, at 3,241,569 to 3,241,844 _3065 Psest_3066: Psest_3066 - hypothetical protein, at 3,241,921 to 3,242,961 _3066 Position (kb) 3241 3242Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3240.363 kb on + strand, within Psest_3061at 3240.364 kb on - strand, within Psest_3061at 3240.364 kb on - strand, within Psest_3061at 3240.449 kb on - strand, within Psest_3061at 3240.459 kb on + strand, within Psest_3061at 3240.473 kb on + strand, within Psest_3061at 3240.473 kb on + strand, within Psest_3061at 3240.506 kb on - strand, within Psest_3061at 3240.579 kb on - strand, within Psest_3061at 3240.602 kb on + strand, within Psest_3061at 3240.602 kb on + strand, within Psest_3061at 3240.602 kb on + strand, within Psest_3061at 3240.603 kb on - strand, within Psest_3061at 3240.603 kb on - strand, within Psest_3061at 3240.603 kb on - strand, within Psest_3061at 3240.606 kb on + strand, within Psest_3061at 3240.606 kb on + strand, within Psest_3061at 3240.606 kb on + strand, within Psest_3061at 3240.606 kb on + strand, within Psest_3061at 3240.606 kb on + strand, within Psest_3061at 3240.607 kb on - strand, within Psest_3061at 3240.607 kb on - strand, within Psest_3061at 3240.607 kb on - strand, within Psest_3061at 3240.657 kb on + strand, within Psest_3061at 3240.657 kb on + strand, within Psest_3061at 3240.658 kb on - strand, within Psest_3061at 3240.659 kb on + strand, within Psest_3061at 3240.659 kb on + strand, within Psest_3061at 3240.659 kb on + strand, within Psest_3061at 3240.659 kb on + strand, within Psest_3061at 3240.659 kb on + strand, within Psest_3061at 3240.659 kb on + strand, within Psest_3061at 3240.659 kb on + strand, within Psest_3061at 3240.659 kb on + strand, within Psest_3061at 3240.659 kb on + strand, within Psest_3061at 3240.660 kb on - strand, within Psest_3061at 3240.660 kb on - strand, within Psest_3061at 3240.660 kb on - strand, within Psest_3061at 3240.660 kb on - strand, within Psest_3061at 3240.746 kb on + strand, within Psest_3061at 3240.880 kb on - strandat 3241.211 kb on + strand, within Psest_3063at 3241.211 kb on + strand, within Psest_3063at 3241.213 kb on + strand, within Psest_3063at 3241.213 kb on + strand, within Psest_3063at 3241.213 kb on + strand, within Psest_3063at 3241.213 kb on + strand, within Psest_3063at 3241.213 kb on + strand, within Psest_3063at 3241.214 kb on - strand, within Psest_3063at 3241.214 kb on - strand, within Psest_3063at 3241.214 kb on - strand, within Psest_3063at 3241.214 kb on - strand, within Psest_3063at 3241.214 kb on - strand, within Psest_3063at 3241.214 kb on - strand, within Psest_3063at 3241.214 kb on - strand, within Psest_3063at 3241.301 kb on + strand, within Psest_3064at 3241.301 kb on + strand, within Psest_3064at 3241.313 kb on + strand, within Psest_3064at 3241.314 kb on - strand, within Psest_3064at 3241.324 kb on - strand, within Psest_3064at 3241.424 kb on + strandat 3241.424 kb on + strandat 3241.425 kb on - strandat 3241.425 kb on - strandat 3241.456 kb on + strandat 3241.456 kb on + strandat 3241.574 kb on + strandat 3241.588 kb on + strandat 3241.588 kb on + strandat 3241.588 kb on + strandat 3241.801 kb on - strand, within Psest_3065at 3242.022 kb on - strandat 3242.022 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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3,240,363 + Psest_3061 0.27 -2.5
3,240,364 - Psest_3061 0.27 -1.2
3,240,364 - Psest_3061 0.27 +0.3
3,240,449 - Psest_3061 0.39 -0.9
3,240,459 + Psest_3061 0.40 +0.2
3,240,473 + Psest_3061 0.42 +0.8
3,240,473 + Psest_3061 0.42 -0.1
3,240,506 - Psest_3061 0.46 +0.8
3,240,579 - Psest_3061 0.55 +1.4
3,240,602 + Psest_3061 0.58 -0.4
3,240,602 + Psest_3061 0.58 +0.6
3,240,602 + Psest_3061 0.58 +0.7
3,240,603 - Psest_3061 0.58 -0.9
3,240,603 - Psest_3061 0.58 -1.8
3,240,603 - Psest_3061 0.58 +0.9
3,240,606 + Psest_3061 0.59 -0.9
3,240,606 + Psest_3061 0.59 +1.5
3,240,606 + Psest_3061 0.59 +4.0
3,240,606 + Psest_3061 0.59 -0.2
3,240,606 + Psest_3061 0.59 -0.0
3,240,607 - Psest_3061 0.59 +1.4
3,240,607 - Psest_3061 0.59 +0.6
3,240,607 - Psest_3061 0.59 -0.9
3,240,657 + Psest_3061 0.65 +1.4
3,240,657 + Psest_3061 0.65 +0.1
3,240,658 - Psest_3061 0.66 +0.4
3,240,659 + Psest_3061 0.66 +0.1
3,240,659 + Psest_3061 0.66 -0.6
3,240,659 + Psest_3061 0.66 -1.6
3,240,659 + Psest_3061 0.66 +0.8
3,240,659 + Psest_3061 0.66 -0.9
3,240,659 + Psest_3061 0.66 -0.2
3,240,659 + Psest_3061 0.66 +0.4
3,240,659 + Psest_3061 0.66 -1.3
3,240,659 + Psest_3061 0.66 +0.8
3,240,660 - Psest_3061 0.66 -2.0
3,240,660 - Psest_3061 0.66 -1.6
3,240,660 - Psest_3061 0.66 +1.6
3,240,660 - Psest_3061 0.66 +0.1
3,240,746 + Psest_3061 0.77 -0.6
3,240,880 - -0.1
3,241,211 + Psest_3063 0.87 -1.4
3,241,211 + Psest_3063 0.87 +0.0
3,241,213 + Psest_3063 0.88 +0.7
3,241,213 + Psest_3063 0.88 +1.2
3,241,213 + Psest_3063 0.88 +1.6
3,241,213 + Psest_3063 0.88 +0.0
3,241,213 + Psest_3063 0.88 -0.0
3,241,214 - Psest_3063 0.89 +1.2
3,241,214 - Psest_3063 0.89 +1.3
3,241,214 - Psest_3063 0.89 -1.3
3,241,214 - Psest_3063 0.89 +0.4
3,241,214 - Psest_3063 0.89 -1.8
3,241,214 - Psest_3063 0.89 -1.1
3,241,214 - Psest_3063 0.89 +1.8
3,241,301 + Psest_3064 0.35 +0.1
3,241,301 + Psest_3064 0.35 +1.6
3,241,313 + Psest_3064 0.40 -0.6
3,241,314 - Psest_3064 0.41 +0.6
3,241,324 - Psest_3064 0.45 +0.2
3,241,424 + +1.3
3,241,424 + +0.2
3,241,425 - +0.1
3,241,425 - -1.8
3,241,456 + -0.8
3,241,456 + +0.7
3,241,574 + +1.7
3,241,588 + -0.2
3,241,588 + -0.6
3,241,588 + +0.4
3,241,801 - Psest_3065 0.84 +0.4
3,242,022 - -0.6
3,242,022 - -0.2

Or see this region's nucleotide sequence