Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2936

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2933 and Psest_2934 are separated by 44 nucleotidesPsest_2934 and Psest_2935 are separated by 12 nucleotidesPsest_2935 and Psest_2936 are separated by 110 nucleotidesPsest_2936 and Psest_2937 are separated by 101 nucleotides Psest_2933: Psest_2933 - Signal transduction histidine kinase, at 3,129,820 to 3,132,564 _2933 Psest_2934: Psest_2934 - Uncharacterized protein conserved in bacteria, at 3,132,609 to 3,132,836 _2934 Psest_2935: Psest_2935 - hypothetical protein, at 3,132,849 to 3,133,277 _2935 Psest_2936: Psest_2936 - Cyanate permease, at 3,133,388 to 3,134,545 _2936 Psest_2937: Psest_2937 - Short-chain alcohol dehydrogenase of unknown specificity, at 3,134,647 to 3,135,456 _2937 Position (kb) 3133 3134 3135Strain fitness (log2 ratio) -2 -1 0 1at 3132.523 kb on + strandat 3132.523 kb on + strandat 3132.541 kb on + strandat 3132.541 kb on + strandat 3132.541 kb on + strandat 3132.541 kb on + strandat 3132.562 kb on + strandat 3132.562 kb on + strandat 3133.048 kb on + strand, within Psest_2935at 3133.048 kb on + strand, within Psest_2935at 3133.256 kb on - strandat 3133.318 kb on + strandat 3133.318 kb on + strandat 3133.319 kb on - strandat 3133.319 kb on - strandat 3133.472 kb on - strandat 3133.472 kb on - strandat 3133.472 kb on - strandat 3133.472 kb on - strandat 3133.472 kb on - strandat 3133.596 kb on + strand, within Psest_2936at 3133.596 kb on + strand, within Psest_2936at 3133.597 kb on - strand, within Psest_2936at 3133.597 kb on - strand, within Psest_2936at 3133.706 kb on + strand, within Psest_2936at 3133.706 kb on + strand, within Psest_2936at 3133.707 kb on - strand, within Psest_2936at 3133.891 kb on - strand, within Psest_2936at 3133.891 kb on - strand, within Psest_2936at 3133.891 kb on - strand, within Psest_2936at 3133.891 kb on - strand, within Psest_2936at 3133.917 kb on + strand, within Psest_2936at 3133.917 kb on + strand, within Psest_2936at 3133.918 kb on - strand, within Psest_2936at 3133.918 kb on - strand, within Psest_2936at 3134.103 kb on - strand, within Psest_2936at 3134.175 kb on + strand, within Psest_2936at 3134.175 kb on + strand, within Psest_2936at 3134.176 kb on - strand, within Psest_2936at 3134.176 kb on - strand, within Psest_2936at 3134.474 kb on - strandat 3134.563 kb on - strandat 3134.591 kb on + strandat 3134.702 kb on + strandat 3134.702 kb on + strandat 3134.801 kb on + strand, within Psest_2937at 3134.801 kb on + strand, within Psest_2937at 3134.802 kb on - strand, within Psest_2937at 3134.802 kb on - strand, within Psest_2937at 3135.008 kb on + strand, within Psest_2937at 3135.009 kb on - strand, within Psest_2937at 3135.269 kb on + strand, within Psest_2937at 3135.269 kb on + strand, within Psest_2937at 3135.270 kb on - strand, within Psest_2937at 3135.270 kb on - strand, within Psest_2937at 3135.450 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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3,132,523 + -0.2
3,132,523 + -1.2
3,132,541 + +0.9
3,132,541 + -0.4
3,132,541 + -1.4
3,132,541 + -1.0
3,132,562 + -0.7
3,132,562 + -0.1
3,133,048 + Psest_2935 0.46 -1.3
3,133,048 + Psest_2935 0.46 +0.5
3,133,256 - -0.9
3,133,318 + +0.6
3,133,318 + +0.3
3,133,319 - -0.4
3,133,319 - -1.4
3,133,472 - +0.8
3,133,472 - +0.7
3,133,472 - -0.8
3,133,472 - +0.3
3,133,472 - -1.9
3,133,596 + Psest_2936 0.18 +0.7
3,133,596 + Psest_2936 0.18 -1.6
3,133,597 - Psest_2936 0.18 -1.9
3,133,597 - Psest_2936 0.18 -1.9
3,133,706 + Psest_2936 0.27 +0.3
3,133,706 + Psest_2936 0.27 +0.4
3,133,707 - Psest_2936 0.28 -1.1
3,133,891 - Psest_2936 0.43 +0.6
3,133,891 - Psest_2936 0.43 -0.4
3,133,891 - Psest_2936 0.43 +0.0
3,133,891 - Psest_2936 0.43 -1.7
3,133,917 + Psest_2936 0.46 -0.5
3,133,917 + Psest_2936 0.46 -0.6
3,133,918 - Psest_2936 0.46 +0.7
3,133,918 - Psest_2936 0.46 +0.1
3,134,103 - Psest_2936 0.62 -1.6
3,134,175 + Psest_2936 0.68 -1.3
3,134,175 + Psest_2936 0.68 +0.0
3,134,176 - Psest_2936 0.68 +0.5
3,134,176 - Psest_2936 0.68 +1.3
3,134,474 - +0.8
3,134,563 - -0.5
3,134,591 + +1.4
3,134,702 + +0.5
3,134,702 + +1.2
3,134,801 + Psest_2937 0.19 +0.6
3,134,801 + Psest_2937 0.19 -0.4
3,134,802 - Psest_2937 0.19 -0.2
3,134,802 - Psest_2937 0.19 -1.2
3,135,008 + Psest_2937 0.45 +0.2
3,135,009 - Psest_2937 0.45 +0.3
3,135,269 + Psest_2937 0.77 -1.8
3,135,269 + Psest_2937 0.77 -1.4
3,135,270 - Psest_2937 0.77 -1.6
3,135,270 - Psest_2937 0.77 -0.9
3,135,450 + -1.1

Or see this region's nucleotide sequence