Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2850

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2849 and Psest_2850 overlap by 1 nucleotidesPsest_2850 and Psest_2851 overlap by 1 nucleotides Psest_2849: Psest_2849 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 3,038,901 to 3,040,400 _2849 Psest_2850: Psest_2850 - Multisubunit Na+/H+ antiporter, MnhC subunit, at 3,040,400 to 3,040,726 _2850 Psest_2851: Psest_2851 - NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit, at 3,040,726 to 3,043,518 _2851 Position (kb) 3040 3041Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3039.403 kb on + strand, within Psest_2849at 3039.407 kb on - strand, within Psest_2849at 3039.407 kb on - strand, within Psest_2849at 3039.407 kb on - strand, within Psest_2849at 3039.484 kb on + strand, within Psest_2849at 3039.582 kb on - strand, within Psest_2849at 3039.621 kb on - strand, within Psest_2849at 3039.621 kb on - strand, within Psest_2849at 3039.700 kb on + strand, within Psest_2849at 3039.701 kb on - strand, within Psest_2849at 3039.721 kb on + strand, within Psest_2849at 3039.863 kb on - strand, within Psest_2849at 3039.919 kb on + strand, within Psest_2849at 3039.920 kb on - strand, within Psest_2849at 3039.920 kb on - strand, within Psest_2849at 3039.920 kb on - strand, within Psest_2849at 3039.920 kb on - strand, within Psest_2849at 3039.920 kb on - strand, within Psest_2849at 3039.974 kb on - strand, within Psest_2849at 3040.067 kb on - strand, within Psest_2849at 3040.222 kb on + strand, within Psest_2849at 3040.222 kb on + strand, within Psest_2849at 3040.223 kb on - strand, within Psest_2849at 3040.223 kb on - strand, within Psest_2849at 3040.270 kb on - strandat 3040.270 kb on - strandat 3040.507 kb on + strand, within Psest_2850at 3040.508 kb on - strand, within Psest_2850at 3040.705 kb on + strandat 3040.706 kb on - strandat 3040.811 kb on + strandat 3040.811 kb on + strandat 3040.811 kb on + strandat 3040.811 kb on + strandat 3040.974 kb on - strandat 3041.049 kb on + strand, within Psest_2851at 3041.050 kb on - strand, within Psest_2851at 3041.050 kb on - strand, within Psest_2851at 3041.240 kb on + strand, within Psest_2851at 3041.241 kb on - strand, within Psest_2851at 3041.241 kb on - strand, within Psest_2851at 3041.241 kb on - strand, within Psest_2851at 3041.244 kb on + strand, within Psest_2851at 3041.244 kb on + strand, within Psest_2851at 3041.287 kb on - strand, within Psest_2851at 3041.384 kb on + strand, within Psest_2851at 3041.405 kb on + strand, within Psest_2851at 3041.531 kb on - strand, within Psest_2851

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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3,039,403 + Psest_2849 0.33 -1.8
3,039,407 - Psest_2849 0.34 -0.7
3,039,407 - Psest_2849 0.34 +1.9
3,039,407 - Psest_2849 0.34 -0.2
3,039,484 + Psest_2849 0.39 +0.6
3,039,582 - Psest_2849 0.45 +3.2
3,039,621 - Psest_2849 0.48 -1.5
3,039,621 - Psest_2849 0.48 -0.4
3,039,700 + Psest_2849 0.53 -1.0
3,039,701 - Psest_2849 0.53 -1.7
3,039,721 + Psest_2849 0.55 +0.1
3,039,863 - Psest_2849 0.64 -0.1
3,039,919 + Psest_2849 0.68 -2.2
3,039,920 - Psest_2849 0.68 +0.3
3,039,920 - Psest_2849 0.68 -0.4
3,039,920 - Psest_2849 0.68 +0.6
3,039,920 - Psest_2849 0.68 +1.3
3,039,920 - Psest_2849 0.68 -1.0
3,039,974 - Psest_2849 0.72 -0.2
3,040,067 - Psest_2849 0.78 -1.5
3,040,222 + Psest_2849 0.88 -0.4
3,040,222 + Psest_2849 0.88 -0.4
3,040,223 - Psest_2849 0.88 -0.3
3,040,223 - Psest_2849 0.88 +0.6
3,040,270 - -2.3
3,040,270 - -0.9
3,040,507 + Psest_2850 0.33 -1.2
3,040,508 - Psest_2850 0.33 +1.5
3,040,705 + -0.9
3,040,706 - +0.5
3,040,811 + +0.1
3,040,811 + +1.2
3,040,811 + -0.3
3,040,811 + -0.1
3,040,974 - +0.2
3,041,049 + Psest_2851 0.12 +0.5
3,041,050 - Psest_2851 0.12 -1.7
3,041,050 - Psest_2851 0.12 +2.1
3,041,240 + Psest_2851 0.18 -0.5
3,041,241 - Psest_2851 0.18 -1.2
3,041,241 - Psest_2851 0.18 +0.3
3,041,241 - Psest_2851 0.18 +1.4
3,041,244 + Psest_2851 0.19 -0.9
3,041,244 + Psest_2851 0.19 -1.4
3,041,287 - Psest_2851 0.20 +0.8
3,041,384 + Psest_2851 0.24 -0.3
3,041,405 + Psest_2851 0.24 -0.4
3,041,531 - Psest_2851 0.29 +0.7

Or see this region's nucleotide sequence