Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2482

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2480 and Psest_2481 are separated by 154 nucleotidesPsest_2481 and Psest_2482 are separated by 63 nucleotidesPsest_2482 and Psest_2483 are separated by 229 nucleotidesPsest_2483 and Psest_2484 are separated by 60 nucleotides Psest_2480: Psest_2480 - Methyl-accepting chemotaxis protein, at 2,652,302 to 2,653,921 _2480 Psest_2481: Psest_2481 - hypothetical protein, at 2,654,076 to 2,654,540 _2481 Psest_2482: Psest_2482 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 2,654,604 to 2,655,629 _2482 Psest_2483: Psest_2483 - Predicted redox protein, regulator of disulfide bond formation, at 2,655,859 to 2,656,293 _2483 Psest_2484: Psest_2484 - Molecular chaperone, HSP90 family, at 2,656,354 to 2,658,258 _2484 Position (kb) 2654 2655 2656Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2653.624 kb on - strand, within Psest_2480at 2653.986 kb on - strandat 2654.023 kb on + strandat 2654.024 kb on - strandat 2654.218 kb on - strand, within Psest_2481at 2654.218 kb on - strand, within Psest_2481at 2654.218 kb on - strand, within Psest_2481at 2654.276 kb on - strand, within Psest_2481at 2654.276 kb on - strand, within Psest_2481at 2654.276 kb on - strand, within Psest_2481at 2654.276 kb on - strand, within Psest_2481at 2654.424 kb on + strand, within Psest_2481at 2654.424 kb on + strand, within Psest_2481at 2654.424 kb on + strand, within Psest_2481at 2654.424 kb on + strand, within Psest_2481at 2654.472 kb on + strand, within Psest_2481at 2654.485 kb on - strand, within Psest_2481at 2654.485 kb on - strand, within Psest_2481at 2654.487 kb on + strand, within Psest_2481at 2654.529 kb on + strandat 2654.529 kb on + strandat 2654.530 kb on - strandat 2654.530 kb on - strandat 2654.574 kb on + strandat 2654.574 kb on + strandat 2654.575 kb on - strandat 2654.717 kb on + strand, within Psest_2482at 2654.836 kb on + strand, within Psest_2482at 2654.836 kb on + strand, within Psest_2482at 2654.837 kb on - strand, within Psest_2482at 2654.869 kb on + strand, within Psest_2482at 2654.869 kb on + strand, within Psest_2482at 2654.869 kb on + strand, within Psest_2482at 2654.870 kb on - strand, within Psest_2482at 2654.870 kb on - strand, within Psest_2482at 2654.870 kb on - strand, within Psest_2482at 2654.870 kb on - strand, within Psest_2482at 2655.104 kb on - strand, within Psest_2482at 2655.104 kb on - strand, within Psest_2482at 2655.362 kb on - strand, within Psest_2482at 2655.362 kb on - strand, within Psest_2482at 2655.362 kb on - strand, within Psest_2482at 2655.385 kb on + strand, within Psest_2482at 2655.526 kb on + strand, within Psest_2482at 2655.526 kb on + strand, within Psest_2482at 2655.526 kb on + strand, within Psest_2482at 2655.526 kb on + strand, within Psest_2482at 2655.526 kb on + strand, within Psest_2482at 2655.545 kb on + strandat 2655.546 kb on - strandat 2655.576 kb on + strandat 2655.577 kb on - strandat 2655.625 kb on + strandat 2655.626 kb on - strandat 2655.626 kb on - strandat 2655.657 kb on + strandat 2655.714 kb on - strandat 2655.728 kb on - strandat 2655.777 kb on + strandat 2655.777 kb on + strandat 2655.777 kb on + strandat 2655.777 kb on + strandat 2655.777 kb on + strandat 2655.777 kb on + strandat 2655.777 kb on + strandat 2655.777 kb on + strandat 2655.778 kb on - strandat 2655.778 kb on - strandat 2655.778 kb on - strandat 2655.778 kb on - strandat 2655.778 kb on - strandat 2655.778 kb on - strandat 2655.778 kb on - strandat 2655.778 kb on - strandat 2655.778 kb on - strandat 2655.778 kb on - strandat 2655.780 kb on + strandat 2655.855 kb on + strandat 2655.855 kb on + strandat 2655.855 kb on + strandat 2655.855 kb on + strandat 2655.855 kb on + strandat 2655.856 kb on - strandat 2655.856 kb on - strandat 2655.977 kb on + strand, within Psest_2483at 2655.977 kb on + strand, within Psest_2483at 2655.978 kb on - strand, within Psest_2483at 2655.978 kb on - strand, within Psest_2483at 2656.034 kb on + strand, within Psest_2483at 2656.035 kb on - strand, within Psest_2483at 2656.035 kb on - strand, within Psest_2483at 2656.035 kb on - strand, within Psest_2483at 2656.290 kb on - strandat 2656.393 kb on + strandat 2656.393 kb on + strandat 2656.393 kb on + strandat 2656.394 kb on - strandat 2656.394 kb on - strandat 2656.394 kb on - strandat 2656.394 kb on - strandat 2656.397 kb on + strandat 2656.397 kb on + strandat 2656.397 kb on + strandat 2656.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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2,653,624 - Psest_2480 0.82 -0.1
2,653,986 - +2.7
2,654,023 + -0.3
2,654,024 - -0.0
2,654,218 - Psest_2481 0.31 +1.5
2,654,218 - Psest_2481 0.31 +0.5
2,654,218 - Psest_2481 0.31 +0.2
2,654,276 - Psest_2481 0.43 -0.2
2,654,276 - Psest_2481 0.43 +0.7
2,654,276 - Psest_2481 0.43 +0.6
2,654,276 - Psest_2481 0.43 +0.0
2,654,424 + Psest_2481 0.75 +0.2
2,654,424 + Psest_2481 0.75 -0.9
2,654,424 + Psest_2481 0.75 +1.4
2,654,424 + Psest_2481 0.75 +0.9
2,654,472 + Psest_2481 0.85 +2.7
2,654,485 - Psest_2481 0.88 -0.3
2,654,485 - Psest_2481 0.88 -0.4
2,654,487 + Psest_2481 0.88 +2.7
2,654,529 + -2.4
2,654,529 + -1.3
2,654,530 - -1.8
2,654,530 - +0.7
2,654,574 + +0.2
2,654,574 + -0.7
2,654,575 - +1.4
2,654,717 + Psest_2482 0.11 +0.7
2,654,836 + Psest_2482 0.23 -0.1
2,654,836 + Psest_2482 0.23 -0.9
2,654,837 - Psest_2482 0.23 -2.9
2,654,869 + Psest_2482 0.26 +1.0
2,654,869 + Psest_2482 0.26 +0.2
2,654,869 + Psest_2482 0.26 +0.2
2,654,870 - Psest_2482 0.26 +0.2
2,654,870 - Psest_2482 0.26 +0.4
2,654,870 - Psest_2482 0.26 +1.5
2,654,870 - Psest_2482 0.26 -0.9
2,655,104 - Psest_2482 0.49 +0.2
2,655,104 - Psest_2482 0.49 +0.3
2,655,362 - Psest_2482 0.74 +0.8
2,655,362 - Psest_2482 0.74 -0.4
2,655,362 - Psest_2482 0.74 -1.2
2,655,385 + Psest_2482 0.76 -0.5
2,655,526 + Psest_2482 0.90 -0.7
2,655,526 + Psest_2482 0.90 +0.1
2,655,526 + Psest_2482 0.90 -1.4
2,655,526 + Psest_2482 0.90 +0.4
2,655,526 + Psest_2482 0.90 -0.2
2,655,545 + -2.0
2,655,546 - +0.5
2,655,576 + +0.2
2,655,577 - +3.4
2,655,625 + -2.9
2,655,626 - -0.3
2,655,626 - -0.5
2,655,657 + -1.6
2,655,714 - +0.5
2,655,728 - +1.8
2,655,777 + -0.5
2,655,777 + +0.6
2,655,777 + +0.1
2,655,777 + +2.3
2,655,777 + +0.6
2,655,777 + -0.8
2,655,777 + -1.1
2,655,777 + -0.8
2,655,778 - -0.1
2,655,778 - +1.0
2,655,778 - -1.1
2,655,778 - -0.0
2,655,778 - -0.3
2,655,778 - +1.4
2,655,778 - -0.2
2,655,778 - -0.5
2,655,778 - +0.7
2,655,778 - -0.2
2,655,780 + +2.6
2,655,855 + -1.4
2,655,855 + +0.4
2,655,855 + -0.2
2,655,855 + +0.3
2,655,855 + +2.0
2,655,856 - +0.6
2,655,856 - +1.4
2,655,977 + Psest_2483 0.27 +0.4
2,655,977 + Psest_2483 0.27 +1.0
2,655,978 - Psest_2483 0.27 +0.6
2,655,978 - Psest_2483 0.27 +0.8
2,656,034 + Psest_2483 0.40 +1.4
2,656,035 - Psest_2483 0.40 +0.8
2,656,035 - Psest_2483 0.40 -1.4
2,656,035 - Psest_2483 0.40 +0.1
2,656,290 - -0.3
2,656,393 + +0.9
2,656,393 + -1.2
2,656,393 + -2.4
2,656,394 - +2.0
2,656,394 - +0.3
2,656,394 - +0.7
2,656,394 - -2.2
2,656,397 + -1.1
2,656,397 + +0.8
2,656,397 + +0.8
2,656,398 - +0.8

Or see this region's nucleotide sequence