Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2427

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2426 and Psest_2427 are separated by 520 nucleotidesPsest_2427 and Psest_2428 are separated by 7 nucleotidesPsest_2428 and Psest_2429 overlap by 4 nucleotides Psest_2426: Psest_2426 - PAS domain S-box, at 2,589,576 to 2,592,041 _2426 Psest_2427: Psest_2427 - SH3 domain protein, at 2,592,562 to 2,593,236 _2427 Psest_2428: Psest_2428 - hypothetical protein, at 2,593,244 to 2,593,555 _2428 Psest_2429: Psest_2429 - Predicted branched-chain amino acid permease (azaleucine resistance), at 2,593,552 to 2,594,169 _2429 Position (kb) 2592 2593 2594Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2591.719 kb on + strand, within Psest_2426at 2591.828 kb on + strandat 2591.828 kb on + strandat 2591.829 kb on - strandat 2591.829 kb on - strandat 2592.057 kb on - strandat 2592.121 kb on + strandat 2592.121 kb on + strandat 2592.121 kb on + strandat 2592.121 kb on + strandat 2592.122 kb on - strandat 2592.122 kb on - strandat 2592.122 kb on - strandat 2592.569 kb on + strandat 2592.569 kb on + strandat 2592.569 kb on + strandat 2592.569 kb on + strandat 2592.569 kb on + strandat 2592.570 kb on - strandat 2592.570 kb on - strandat 2592.570 kb on - strandat 2592.570 kb on - strandat 2592.723 kb on + strand, within Psest_2427at 2592.723 kb on + strand, within Psest_2427at 2592.723 kb on + strand, within Psest_2427at 2592.817 kb on + strand, within Psest_2427at 2592.971 kb on + strand, within Psest_2427at 2592.972 kb on - strand, within Psest_2427at 2593.135 kb on + strand, within Psest_2427at 2593.135 kb on + strand, within Psest_2427at 2593.135 kb on + strand, within Psest_2427at 2593.135 kb on + strand, within Psest_2427at 2593.135 kb on + strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.136 kb on - strand, within Psest_2427at 2593.242 kb on + strandat 2593.255 kb on - strandat 2593.255 kb on - strandat 2593.255 kb on - strandat 2593.269 kb on + strandat 2593.269 kb on + strandat 2593.269 kb on + strandat 2593.269 kb on + strandat 2593.270 kb on - strandat 2593.272 kb on + strandat 2593.272 kb on + strandat 2593.272 kb on + strandat 2593.272 kb on + strandat 2593.272 kb on + strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.273 kb on - strandat 2593.302 kb on - strand, within Psest_2428at 2593.398 kb on + strand, within Psest_2428at 2593.398 kb on + strand, within Psest_2428at 2593.399 kb on - strand, within Psest_2428at 2593.399 kb on - strand, within Psest_2428at 2593.399 kb on - strand, within Psest_2428at 2593.399 kb on - strand, within Psest_2428at 2593.399 kb on - strand, within Psest_2428at 2593.610 kb on + strandat 2593.611 kb on - strandat 2593.611 kb on - strandat 2593.611 kb on - strandat 2593.794 kb on + strand, within Psest_2429at 2593.794 kb on + strand, within Psest_2429at 2593.795 kb on - strand, within Psest_2429at 2593.795 kb on - strand, within Psest_2429at 2593.795 kb on - strand, within Psest_2429at 2593.795 kb on - strand, within Psest_2429at 2593.795 kb on - strand, within Psest_2429at 2593.795 kb on - strand, within Psest_2429at 2593.911 kb on - strand, within Psest_2429at 2593.911 kb on - strand, within Psest_2429at 2593.911 kb on - strand, within Psest_2429at 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.211 kb on + strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.212 kb on - strandat 2594.213 kb on + strandat 2594.213 kb on + strandat 2594.213 kb on + strandat 2594.213 kb on + strandat 2594.213 kb on + strandat 2594.214 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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2,591,719 + Psest_2426 0.87 +0.4
2,591,828 + -0.9
2,591,828 + +0.6
2,591,829 - -0.0
2,591,829 - -0.8
2,592,057 - -0.7
2,592,121 + +0.1
2,592,121 + +0.4
2,592,121 + -0.8
2,592,121 + -1.5
2,592,122 - +3.6
2,592,122 - +0.6
2,592,122 - +0.5
2,592,569 + -0.6
2,592,569 + +0.1
2,592,569 + +0.6
2,592,569 + +0.5
2,592,569 + +1.2
2,592,570 - -1.6
2,592,570 - +1.2
2,592,570 - +0.6
2,592,570 - +1.6
2,592,723 + Psest_2427 0.24 -0.3
2,592,723 + Psest_2427 0.24 -0.3
2,592,723 + Psest_2427 0.24 +1.2
2,592,817 + Psest_2427 0.38 +1.0
2,592,971 + Psest_2427 0.61 +0.9
2,592,972 - Psest_2427 0.61 +1.3
2,593,135 + Psest_2427 0.85 -0.5
2,593,135 + Psest_2427 0.85 +0.7
2,593,135 + Psest_2427 0.85 +0.3
2,593,135 + Psest_2427 0.85 +0.1
2,593,135 + Psest_2427 0.85 -0.9
2,593,136 - Psest_2427 0.85 +0.6
2,593,136 - Psest_2427 0.85 -0.9
2,593,136 - Psest_2427 0.85 +0.1
2,593,136 - Psest_2427 0.85 +1.1
2,593,136 - Psest_2427 0.85 +0.7
2,593,136 - Psest_2427 0.85 +0.2
2,593,136 - Psest_2427 0.85 -0.5
2,593,136 - Psest_2427 0.85 +1.2
2,593,136 - Psest_2427 0.85 +1.8
2,593,136 - Psest_2427 0.85 +0.9
2,593,242 + +2.0
2,593,255 - -1.1
2,593,255 - +0.6
2,593,255 - -0.4
2,593,269 + +0.1
2,593,269 + +0.2
2,593,269 + +0.4
2,593,269 + +0.8
2,593,270 - +0.9
2,593,272 + -1.4
2,593,272 + -1.1
2,593,272 + +0.3
2,593,272 + -1.1
2,593,272 + -0.4
2,593,273 - -1.6
2,593,273 - -0.9
2,593,273 - +0.1
2,593,273 - +1.6
2,593,273 - -0.9
2,593,273 - +1.0
2,593,273 - -0.1
2,593,273 - +1.8
2,593,273 - -0.7
2,593,302 - Psest_2428 0.19 +1.6
2,593,398 + Psest_2428 0.49 +0.1
2,593,398 + Psest_2428 0.49 -1.7
2,593,399 - Psest_2428 0.50 -1.1
2,593,399 - Psest_2428 0.50 -0.9
2,593,399 - Psest_2428 0.50 +1.5
2,593,399 - Psest_2428 0.50 -0.6
2,593,399 - Psest_2428 0.50 -0.5
2,593,610 + +0.1
2,593,611 - +0.2
2,593,611 - -0.5
2,593,611 - -0.1
2,593,794 + Psest_2429 0.39 -1.8
2,593,794 + Psest_2429 0.39 -2.9
2,593,795 - Psest_2429 0.39 +1.8
2,593,795 - Psest_2429 0.39 +0.2
2,593,795 - Psest_2429 0.39 -1.8
2,593,795 - Psest_2429 0.39 -0.3
2,593,795 - Psest_2429 0.39 -1.1
2,593,795 - Psest_2429 0.39 +0.5
2,593,911 - Psest_2429 0.58 +0.2
2,593,911 - Psest_2429 0.58 -0.2
2,593,911 - Psest_2429 0.58 +1.5
2,594,211 + +2.2
2,594,211 + +1.0
2,594,211 + +1.5
2,594,211 + +0.4
2,594,211 + -3.4
2,594,211 + -0.5
2,594,211 + -2.6
2,594,211 + +2.1
2,594,211 + +0.9
2,594,211 + -2.5
2,594,211 + +0.2
2,594,211 + -1.1
2,594,211 + +0.7
2,594,212 - -1.2
2,594,212 - -1.5
2,594,212 - -0.5
2,594,212 - +1.2
2,594,212 - -1.7
2,594,212 - -0.6
2,594,212 - -0.4
2,594,212 - -0.5
2,594,212 - -0.2
2,594,212 - +1.2
2,594,212 - +1.0
2,594,213 + -2.1
2,594,213 + -0.5
2,594,213 + +1.1
2,594,213 + -2.2
2,594,213 + +1.2
2,594,214 - -0.0

Or see this region's nucleotide sequence