Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2312

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2310 and Psest_2311 are separated by 99 nucleotidesPsest_2311 and Psest_2312 are separated by 84 nucleotidesPsest_2312 and Psest_2313 are separated by 2 nucleotidesPsest_2313 and Psest_2314 are separated by 56 nucleotides Psest_2310: Psest_2310 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 2,461,984 to 2,462,976 _2310 Psest_2311: Psest_2311 - RNA polymerase sigma factor, sigma-70 family, at 2,463,076 to 2,463,666 _2311 Psest_2312: Psest_2312 - Small-conductance mechanosensitive channel, at 2,463,751 to 2,464,575 _2312 Psest_2313: Psest_2313 - hypothetical protein, at 2,464,578 to 2,464,820 _2313 Psest_2314: Psest_2314 - Mg2+ and Co2+ transporters, at 2,464,877 to 2,465,872 _2314 Position (kb) 2463 2464 2465Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2462.862 kb on - strand, within Psest_2310at 2463.000 kb on - strandat 2463.016 kb on - strandat 2463.016 kb on - strandat 2463.057 kb on - strandat 2463.057 kb on - strandat 2463.059 kb on - strandat 2463.059 kb on - strandat 2463.731 kb on - strandat 2463.731 kb on - strandat 2463.900 kb on - strand, within Psest_2312at 2463.900 kb on - strand, within Psest_2312at 2463.900 kb on - strand, within Psest_2312at 2463.900 kb on - strand, within Psest_2312at 2463.902 kb on - strand, within Psest_2312at 2463.902 kb on - strand, within Psest_2312at 2463.902 kb on - strand, within Psest_2312at 2463.902 kb on - strand, within Psest_2312at 2463.902 kb on - strand, within Psest_2312at 2463.902 kb on - strand, within Psest_2312at 2463.902 kb on - strand, within Psest_2312at 2463.902 kb on - strand, within Psest_2312at 2463.915 kb on - strand, within Psest_2312at 2463.915 kb on - strand, within Psest_2312at 2463.915 kb on - strand, within Psest_2312at 2463.915 kb on - strand, within Psest_2312at 2464.014 kb on - strand, within Psest_2312at 2464.014 kb on - strand, within Psest_2312at 2464.014 kb on - strand, within Psest_2312at 2464.014 kb on - strand, within Psest_2312at 2464.014 kb on - strand, within Psest_2312at 2464.014 kb on - strand, within Psest_2312at 2464.040 kb on - strand, within Psest_2312at 2464.040 kb on - strand, within Psest_2312at 2464.040 kb on - strand, within Psest_2312at 2464.311 kb on - strand, within Psest_2312at 2464.311 kb on - strand, within Psest_2312at 2464.345 kb on - strand, within Psest_2312at 2464.345 kb on - strand, within Psest_2312at 2464.345 kb on - strand, within Psest_2312at 2464.345 kb on - strand, within Psest_2312at 2464.345 kb on - strand, within Psest_2312at 2464.349 kb on - strand, within Psest_2312at 2464.349 kb on - strand, within Psest_2312at 2464.349 kb on - strand, within Psest_2312at 2464.349 kb on - strand, within Psest_2312at 2464.838 kb on - strandat 2464.838 kb on - strandat 2464.838 kb on - strandat 2464.838 kb on - strandat 2464.959 kb on + strandat 2465.058 kb on + strand, within Psest_2314at 2465.058 kb on + strand, within Psest_2314at 2465.058 kb on + strand, within Psest_2314at 2465.058 kb on + strand, within Psest_2314at 2465.058 kb on + strand, within Psest_2314at 2465.058 kb on + strand, within Psest_2314at 2465.058 kb on + strand, within Psest_2314at 2465.059 kb on - strand, within Psest_2314at 2465.059 kb on - strand, within Psest_2314at 2465.059 kb on - strand, within Psest_2314at 2465.059 kb on - strand, within Psest_2314at 2465.320 kb on + strand, within Psest_2314at 2465.320 kb on + strand, within Psest_2314at 2465.320 kb on + strand, within Psest_2314at 2465.321 kb on - strand, within Psest_2314at 2465.393 kb on + strand, within Psest_2314at 2465.422 kb on - strand, within Psest_2314

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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2,462,862 - Psest_2310 0.88 +0.3
2,463,000 - +0.4
2,463,016 - -0.4
2,463,016 - +2.9
2,463,057 - +0.6
2,463,057 - +1.3
2,463,059 - +1.3
2,463,059 - +0.1
2,463,731 - +0.9
2,463,731 - +0.7
2,463,900 - Psest_2312 0.18 +0.1
2,463,900 - Psest_2312 0.18 +1.4
2,463,900 - Psest_2312 0.18 +2.0
2,463,900 - Psest_2312 0.18 +1.3
2,463,902 - Psest_2312 0.18 +0.9
2,463,902 - Psest_2312 0.18 +1.3
2,463,902 - Psest_2312 0.18 -1.0
2,463,902 - Psest_2312 0.18 +0.9
2,463,902 - Psest_2312 0.18 -1.4
2,463,902 - Psest_2312 0.18 -1.9
2,463,902 - Psest_2312 0.18 +1.2
2,463,902 - Psest_2312 0.18 +0.7
2,463,915 - Psest_2312 0.20 -1.3
2,463,915 - Psest_2312 0.20 +2.3
2,463,915 - Psest_2312 0.20 +1.0
2,463,915 - Psest_2312 0.20 +0.3
2,464,014 - Psest_2312 0.32 +2.7
2,464,014 - Psest_2312 0.32 +2.3
2,464,014 - Psest_2312 0.32 +2.5
2,464,014 - Psest_2312 0.32 +1.4
2,464,014 - Psest_2312 0.32 -0.3
2,464,014 - Psest_2312 0.32 +0.6
2,464,040 - Psest_2312 0.35 -1.0
2,464,040 - Psest_2312 0.35 +1.5
2,464,040 - Psest_2312 0.35 +1.5
2,464,311 - Psest_2312 0.68 +3.4
2,464,311 - Psest_2312 0.68 +0.0
2,464,345 - Psest_2312 0.72 +0.8
2,464,345 - Psest_2312 0.72 -1.0
2,464,345 - Psest_2312 0.72 +0.1
2,464,345 - Psest_2312 0.72 -1.5
2,464,345 - Psest_2312 0.72 +0.9
2,464,349 - Psest_2312 0.72 -0.6
2,464,349 - Psest_2312 0.72 -2.0
2,464,349 - Psest_2312 0.72 +2.1
2,464,349 - Psest_2312 0.72 +0.4
2,464,838 - +0.4
2,464,838 - +0.8
2,464,838 - -0.6
2,464,838 - +0.9
2,464,959 + -1.4
2,465,058 + Psest_2314 0.18 +0.1
2,465,058 + Psest_2314 0.18 +2.0
2,465,058 + Psest_2314 0.18 +0.8
2,465,058 + Psest_2314 0.18 -0.3
2,465,058 + Psest_2314 0.18 +0.5
2,465,058 + Psest_2314 0.18 -0.7
2,465,058 + Psest_2314 0.18 -1.0
2,465,059 - Psest_2314 0.18 +0.4
2,465,059 - Psest_2314 0.18 +1.0
2,465,059 - Psest_2314 0.18 +3.2
2,465,059 - Psest_2314 0.18 -0.1
2,465,320 + Psest_2314 0.44 +0.7
2,465,320 + Psest_2314 0.44 +0.2
2,465,320 + Psest_2314 0.44 -1.3
2,465,321 - Psest_2314 0.45 +0.7
2,465,393 + Psest_2314 0.52 -0.4
2,465,422 - Psest_2314 0.55 +0.9

Or see this region's nucleotide sequence