Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2126

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2125 and Psest_2126 are separated by 58 nucleotidesPsest_2126 and Psest_2127 are separated by 24 nucleotides Psest_2125: Psest_2125 - D-gluconate TRAP transporter, periplasmic component (from data), at 2,256,595 to 2,257,611 _2125 Psest_2126: Psest_2126 - Transcriptional regulators, at 2,257,670 to 2,258,689 _2126 Psest_2127: Psest_2127 - Transcriptional regulator, at 2,258,714 to 2,259,625 _2127 Position (kb) 2257 2258 2259Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2256.798 kb on + strand, within Psest_2125at 2256.798 kb on + strand, within Psest_2125at 2256.799 kb on - strand, within Psest_2125at 2256.799 kb on - strand, within Psest_2125at 2256.799 kb on - strand, within Psest_2125at 2257.270 kb on + strand, within Psest_2125at 2257.271 kb on - strand, within Psest_2125at 2257.285 kb on + strand, within Psest_2125at 2257.285 kb on + strand, within Psest_2125at 2257.285 kb on + strand, within Psest_2125at 2257.309 kb on + strand, within Psest_2125at 2257.705 kb on + strandat 2257.705 kb on + strandat 2257.705 kb on + strandat 2257.706 kb on - strandat 2257.994 kb on + strand, within Psest_2126at 2258.108 kb on + strand, within Psest_2126at 2258.108 kb on + strand, within Psest_2126at 2258.108 kb on + strand, within Psest_2126at 2258.108 kb on + strand, within Psest_2126at 2258.109 kb on - strand, within Psest_2126at 2258.159 kb on + strand, within Psest_2126at 2258.160 kb on - strand, within Psest_2126at 2258.160 kb on - strand, within Psest_2126at 2258.319 kb on - strand, within Psest_2126at 2258.488 kb on - strand, within Psest_2126at 2258.488 kb on - strand, within Psest_2126at 2258.811 kb on + strand, within Psest_2127at 2258.811 kb on + strand, within Psest_2127at 2258.811 kb on + strand, within Psest_2127at 2258.811 kb on + strand, within Psest_2127at 2258.812 kb on - strand, within Psest_2127at 2258.812 kb on - strand, within Psest_2127at 2258.812 kb on - strand, within Psest_2127at 2258.812 kb on - strand, within Psest_2127at 2258.812 kb on - strand, within Psest_2127at 2258.812 kb on - strand, within Psest_2127at 2258.941 kb on - strand, within Psest_2127at 2258.941 kb on - strand, within Psest_2127at 2258.941 kb on - strand, within Psest_2127at 2258.941 kb on - strand, within Psest_2127at 2259.031 kb on + strand, within Psest_2127at 2259.031 kb on + strand, within Psest_2127at 2259.031 kb on + strand, within Psest_2127at 2259.031 kb on + strand, within Psest_2127at 2259.032 kb on - strand, within Psest_2127at 2259.032 kb on - strand, within Psest_2127at 2259.114 kb on + strand, within Psest_2127at 2259.403 kb on + strand, within Psest_2127at 2259.404 kb on - strand, within Psest_2127at 2259.573 kb on + strandat 2259.573 kb on + strandat 2259.573 kb on + strandat 2259.573 kb on + strandat 2259.573 kb on + strandat 2259.574 kb on - strandat 2259.574 kb on - strandat 2259.574 kb on - strandat 2259.596 kb on + strandat 2259.596 kb on + strandat 2259.596 kb on + strandat 2259.664 kb on + strandat 2259.665 kb on - strandat 2259.665 kb on - strandat 2259.665 kb on - strandat 2259.685 kb on + strandat 2259.686 kb on - strandat 2259.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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2,256,798 + Psest_2125 0.20 -0.1
2,256,798 + Psest_2125 0.20 -0.4
2,256,799 - Psest_2125 0.20 -0.4
2,256,799 - Psest_2125 0.20 +1.1
2,256,799 - Psest_2125 0.20 -0.7
2,257,270 + Psest_2125 0.66 -0.3
2,257,271 - Psest_2125 0.66 -1.7
2,257,285 + Psest_2125 0.68 -0.9
2,257,285 + Psest_2125 0.68 +0.3
2,257,285 + Psest_2125 0.68 +0.6
2,257,309 + Psest_2125 0.70 -0.9
2,257,705 + +3.1
2,257,705 + +3.3
2,257,705 + -0.7
2,257,706 - +0.1
2,257,994 + Psest_2126 0.32 +0.6
2,258,108 + Psest_2126 0.43 -0.4
2,258,108 + Psest_2126 0.43 +0.6
2,258,108 + Psest_2126 0.43 -0.3
2,258,108 + Psest_2126 0.43 -1.1
2,258,109 - Psest_2126 0.43 +0.3
2,258,159 + Psest_2126 0.48 +2.0
2,258,160 - Psest_2126 0.48 +0.7
2,258,160 - Psest_2126 0.48 +3.2
2,258,319 - Psest_2126 0.64 +0.2
2,258,488 - Psest_2126 0.80 +1.9
2,258,488 - Psest_2126 0.80 +1.6
2,258,811 + Psest_2127 0.11 -0.9
2,258,811 + Psest_2127 0.11 +1.6
2,258,811 + Psest_2127 0.11 -1.3
2,258,811 + Psest_2127 0.11 -0.5
2,258,812 - Psest_2127 0.11 -1.0
2,258,812 - Psest_2127 0.11 -0.4
2,258,812 - Psest_2127 0.11 +0.6
2,258,812 - Psest_2127 0.11 +0.8
2,258,812 - Psest_2127 0.11 +0.4
2,258,812 - Psest_2127 0.11 -0.2
2,258,941 - Psest_2127 0.25 +0.9
2,258,941 - Psest_2127 0.25 -0.1
2,258,941 - Psest_2127 0.25 +1.1
2,258,941 - Psest_2127 0.25 -0.4
2,259,031 + Psest_2127 0.35 -1.1
2,259,031 + Psest_2127 0.35 -2.2
2,259,031 + Psest_2127 0.35 +0.4
2,259,031 + Psest_2127 0.35 +0.1
2,259,032 - Psest_2127 0.35 -0.3
2,259,032 - Psest_2127 0.35 +1.6
2,259,114 + Psest_2127 0.44 -0.1
2,259,403 + Psest_2127 0.76 -0.4
2,259,404 - Psest_2127 0.76 +0.8
2,259,573 + +1.0
2,259,573 + +0.5
2,259,573 + +0.7
2,259,573 + +1.0
2,259,573 + +0.8
2,259,574 - -2.4
2,259,574 - +0.6
2,259,574 - +0.1
2,259,596 + -1.9
2,259,596 + +0.4
2,259,596 + +0.1
2,259,664 + +0.2
2,259,665 - +0.3
2,259,665 - -0.9
2,259,665 - +0.8
2,259,685 + +0.8
2,259,686 - +0.7
2,259,686 - +0.5

Or see this region's nucleotide sequence