Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1974

Experiment: Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1973 and Psest_1974 are separated by 3 nucleotidesPsest_1974 and Psest_1975 overlap by 20 nucleotidesPsest_1975 and Psest_1976 are separated by 85 nucleotidesPsest_1976 and Psest_1978 are separated by 442 nucleotides Psest_1973: Psest_1973 - phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial, at 2,085,991 to 2,088,369 _1973 Psest_1974: Psest_1974 - integration host factor, alpha subunit, at 2,088,373 to 2,088,675 _1974 Psest_1975: Psest_1975 - Predicted transcriptional regulators, at 2,088,656 to 2,089,012 _1975 Psest_1976: Psest_1976 - tRNA_Pro_GGG, at 2,089,098 to 2,089,174 _1976 Psest_1978: Psest_1978 - DNA-directed DNA polymerase III (polc), at 2,089,617 to 2,092,697 _1978 Position (kb) 2088 2089Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2088.367 kb on + strandat 2088.367 kb on + strandat 2088.368 kb on - strandat 2088.412 kb on + strand, within Psest_1974at 2088.413 kb on - strand, within Psest_1974at 2088.413 kb on - strand, within Psest_1974at 2088.413 kb on - strand, within Psest_1974at 2088.433 kb on - strand, within Psest_1974at 2088.433 kb on - strand, within Psest_1974at 2088.655 kb on + strandat 2088.655 kb on + strandat 2088.655 kb on + strandat 2088.873 kb on - strand, within Psest_1975at 2088.910 kb on + strand, within Psest_1975at 2088.910 kb on + strand, within Psest_1975at 2088.910 kb on + strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.911 kb on - strand, within Psest_1975at 2088.948 kb on - strand, within Psest_1975at 2088.958 kb on + strand, within Psest_1975at 2088.959 kb on - strand, within Psest_1975at 2089.010 kb on + strandat 2089.010 kb on + strandat 2089.010 kb on + strandat 2089.010 kb on + strandat 2089.054 kb on - strandat 2089.058 kb on + strandat 2089.058 kb on + strandat 2089.058 kb on + strandat 2089.058 kb on + strandat 2089.060 kb on + strandat 2089.178 kb on - strandat 2089.521 kb on + strandat 2089.522 kb on - strandat 2089.536 kb on - strandat 2089.567 kb on + strandat 2089.584 kb on + strandat 2089.585 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
remove
2,088,367 + +0.3
2,088,367 + +2.5
2,088,368 - +0.3
2,088,412 + Psest_1974 0.13 +2.2
2,088,413 - Psest_1974 0.13 +0.6
2,088,413 - Psest_1974 0.13 +3.0
2,088,413 - Psest_1974 0.13 +2.5
2,088,433 - Psest_1974 0.20 +0.1
2,088,433 - Psest_1974 0.20 +0.5
2,088,655 + +0.4
2,088,655 + +0.1
2,088,655 + +0.3
2,088,873 - Psest_1975 0.61 -0.1
2,088,910 + Psest_1975 0.71 +0.5
2,088,910 + Psest_1975 0.71 +0.3
2,088,910 + Psest_1975 0.71 +0.4
2,088,911 - Psest_1975 0.71 -0.3
2,088,911 - Psest_1975 0.71 -0.3
2,088,911 - Psest_1975 0.71 +1.7
2,088,911 - Psest_1975 0.71 +0.3
2,088,911 - Psest_1975 0.71 -1.0
2,088,911 - Psest_1975 0.71 +0.8
2,088,911 - Psest_1975 0.71 -0.3
2,088,911 - Psest_1975 0.71 -0.4
2,088,911 - Psest_1975 0.71 -0.9
2,088,911 - Psest_1975 0.71 +0.1
2,088,911 - Psest_1975 0.71 +1.6
2,088,911 - Psest_1975 0.71 -0.7
2,088,911 - Psest_1975 0.71 -0.2
2,088,911 - Psest_1975 0.71 -0.1
2,088,948 - Psest_1975 0.82 -0.5
2,088,958 + Psest_1975 0.85 +0.7
2,088,959 - Psest_1975 0.85 -1.3
2,089,010 + -0.2
2,089,010 + +1.5
2,089,010 + +0.9
2,089,010 + -0.6
2,089,054 - -0.9
2,089,058 + +0.7
2,089,058 + -0.5
2,089,058 + +0.2
2,089,058 + -0.2
2,089,060 + +1.9
2,089,178 - -0.9
2,089,521 + +0.3
2,089,522 - -1.7
2,089,536 - +0.5
2,089,567 + -2.2
2,089,584 + +0.8
2,089,585 - -0.6

Or see this region's nucleotide sequence