Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1904

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1903 and Psest_1904 are separated by 74 nucleotidesPsest_1904 and Psest_1905 are separated by 116 nucleotidesPsest_1905 and Psest_1907 are separated by 284 nucleotides Psest_1903: Psest_1903 - chorismate synthase, at 2,013,534 to 2,014,625 _1903 Psest_1904: Psest_1904 - Arabinose efflux permease, at 2,014,700 to 2,015,851 _1904 Psest_1905: Psest_1905 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 2,015,968 to 2,016,513 _1905 Psest_1907: Psest_1907 - hypothetical protein, at 2,016,798 to 2,017,007 _1907 Position (kb) 2014 2015 2016Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2014.613 kb on - strandat 2014.613 kb on - strandat 2014.666 kb on + strandat 2014.667 kb on - strandat 2014.667 kb on - strandat 2014.667 kb on - strandat 2014.667 kb on - strandat 2014.667 kb on - strandat 2014.700 kb on - strandat 2014.740 kb on - strandat 2014.790 kb on + strandat 2014.791 kb on - strandat 2015.322 kb on - strand, within Psest_1904at 2015.360 kb on + strand, within Psest_1904at 2015.363 kb on + strand, within Psest_1904at 2015.364 kb on - strand, within Psest_1904at 2015.364 kb on - strand, within Psest_1904at 2015.364 kb on - strand, within Psest_1904at 2015.548 kb on - strand, within Psest_1904at 2015.608 kb on + strand, within Psest_1904at 2015.609 kb on - strand, within Psest_1904at 2015.816 kb on - strandat 2016.334 kb on + strand, within Psest_1905at 2016.341 kb on + strand, within Psest_1905at 2016.341 kb on + strand, within Psest_1905at 2016.439 kb on - strand, within Psest_1905at 2016.467 kb on - strandat 2016.565 kb on - strandat 2016.565 kb on - strandat 2016.565 kb on - strandat 2016.594 kb on + strandat 2016.594 kb on + strandat 2016.594 kb on + strandat 2016.594 kb on + strandat 2016.595 kb on - strandat 2016.595 kb on - strandat 2016.595 kb on - strandat 2016.683 kb on + strandat 2016.684 kb on - strandat 2016.764 kb on + strandat 2016.764 kb on + strandat 2016.764 kb on + strandat 2016.764 kb on + strandat 2016.765 kb on - strandat 2016.765 kb on - strandat 2016.769 kb on + strandat 2016.769 kb on + strandat 2016.769 kb on + strandat 2016.769 kb on + strandat 2016.770 kb on - strandat 2016.770 kb on - strandat 2016.770 kb on - strandat 2016.770 kb on - strandat 2016.770 kb on - strandat 2016.770 kb on - strandat 2016.773 kb on + strandat 2016.774 kb on - strandat 2016.848 kb on + strand, within Psest_1907

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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2,014,613 - +2.5
2,014,613 - -1.3
2,014,666 + -0.4
2,014,667 - +0.7
2,014,667 - -0.4
2,014,667 - +1.3
2,014,667 - -1.8
2,014,667 - +1.9
2,014,700 - -1.5
2,014,740 - +1.4
2,014,790 + -0.3
2,014,791 - -0.2
2,015,322 - Psest_1904 0.54 +1.9
2,015,360 + Psest_1904 0.57 +0.2
2,015,363 + Psest_1904 0.58 -2.5
2,015,364 - Psest_1904 0.58 +1.1
2,015,364 - Psest_1904 0.58 +3.0
2,015,364 - Psest_1904 0.58 +1.6
2,015,548 - Psest_1904 0.74 +0.9
2,015,608 + Psest_1904 0.79 -0.2
2,015,609 - Psest_1904 0.79 +3.5
2,015,816 - +1.2
2,016,334 + Psest_1905 0.67 -0.7
2,016,341 + Psest_1905 0.68 +0.3
2,016,341 + Psest_1905 0.68 -2.2
2,016,439 - Psest_1905 0.86 -1.1
2,016,467 - +0.8
2,016,565 - -1.0
2,016,565 - -2.9
2,016,565 - -0.7
2,016,594 + +0.2
2,016,594 + -0.2
2,016,594 + +1.5
2,016,594 + -1.7
2,016,595 - +0.9
2,016,595 - -0.1
2,016,595 - -0.2
2,016,683 + +0.3
2,016,684 - -0.5
2,016,764 + +0.0
2,016,764 + +0.6
2,016,764 + -0.3
2,016,764 + -0.5
2,016,765 - -1.6
2,016,765 - -0.1
2,016,769 + +0.3
2,016,769 + +0.4
2,016,769 + +0.7
2,016,769 + -1.0
2,016,770 - -0.1
2,016,770 - +2.0
2,016,770 - -0.0
2,016,770 - -0.9
2,016,770 - +0.7
2,016,770 - -1.1
2,016,773 + -1.5
2,016,774 - +1.9
2,016,848 + Psest_1907 0.24 +0.3

Or see this region's nucleotide sequence