Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1903 and Psest_1904 are separated by 74 nucleotides Psest_1904 and Psest_1905 are separated by 116 nucleotides Psest_1905 and Psest_1907 are separated by 284 nucleotides
Psest_1903: Psest_1903 - chorismate synthase, at 2,013,534 to 2,014,625
_1903
Psest_1904: Psest_1904 - Arabinose efflux permease, at 2,014,700 to 2,015,851
_1904
Psest_1905: Psest_1905 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 2,015,968 to 2,016,513
_1905
Psest_1907: Psest_1907 - hypothetical protein, at 2,016,798 to 2,017,007
_1907
Position (kb)
2014
2015
2016 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2014.613 kb on - strand at 2014.613 kb on - strand at 2014.666 kb on + strand at 2014.667 kb on - strand at 2014.667 kb on - strand at 2014.667 kb on - strand at 2014.667 kb on - strand at 2014.667 kb on - strand at 2014.700 kb on - strand at 2014.740 kb on - strand at 2014.790 kb on + strand at 2014.791 kb on - strand at 2015.322 kb on - strand, within Psest_1904 at 2015.360 kb on + strand, within Psest_1904 at 2015.363 kb on + strand, within Psest_1904 at 2015.364 kb on - strand, within Psest_1904 at 2015.364 kb on - strand, within Psest_1904 at 2015.364 kb on - strand, within Psest_1904 at 2015.548 kb on - strand, within Psest_1904 at 2015.608 kb on + strand, within Psest_1904 at 2015.609 kb on - strand, within Psest_1904 at 2015.816 kb on - strand at 2016.334 kb on + strand, within Psest_1905 at 2016.341 kb on + strand, within Psest_1905 at 2016.341 kb on + strand, within Psest_1905 at 2016.439 kb on - strand, within Psest_1905 at 2016.467 kb on - strand at 2016.565 kb on - strand at 2016.565 kb on - strand at 2016.565 kb on - strand at 2016.594 kb on + strand at 2016.594 kb on + strand at 2016.594 kb on + strand at 2016.594 kb on + strand at 2016.595 kb on - strand at 2016.595 kb on - strand at 2016.595 kb on - strand at 2016.683 kb on + strand at 2016.684 kb on - strand at 2016.764 kb on + strand at 2016.764 kb on + strand at 2016.764 kb on + strand at 2016.764 kb on + strand at 2016.765 kb on - strand at 2016.765 kb on - strand at 2016.769 kb on + strand at 2016.769 kb on + strand at 2016.769 kb on + strand at 2016.769 kb on + strand at 2016.770 kb on - strand at 2016.770 kb on - strand at 2016.770 kb on - strand at 2016.770 kb on - strand at 2016.770 kb on - strand at 2016.770 kb on - strand at 2016.773 kb on + strand at 2016.774 kb on - strand at 2016.848 kb on + strand, within Psest_1907
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 2,014,613 - +2.5 2,014,613 - -1.3 2,014,666 + -0.4 2,014,667 - +0.7 2,014,667 - -0.4 2,014,667 - +1.3 2,014,667 - -1.8 2,014,667 - +1.9 2,014,700 - -1.5 2,014,740 - +1.4 2,014,790 + -0.3 2,014,791 - -0.2 2,015,322 - Psest_1904 0.54 +1.9 2,015,360 + Psest_1904 0.57 +0.2 2,015,363 + Psest_1904 0.58 -2.5 2,015,364 - Psest_1904 0.58 +1.1 2,015,364 - Psest_1904 0.58 +3.0 2,015,364 - Psest_1904 0.58 +1.6 2,015,548 - Psest_1904 0.74 +0.9 2,015,608 + Psest_1904 0.79 -0.2 2,015,609 - Psest_1904 0.79 +3.5 2,015,816 - +1.2 2,016,334 + Psest_1905 0.67 -0.7 2,016,341 + Psest_1905 0.68 +0.3 2,016,341 + Psest_1905 0.68 -2.2 2,016,439 - Psest_1905 0.86 -1.1 2,016,467 - +0.8 2,016,565 - -1.0 2,016,565 - -2.9 2,016,565 - -0.7 2,016,594 + +0.2 2,016,594 + -0.2 2,016,594 + +1.5 2,016,594 + -1.7 2,016,595 - +0.9 2,016,595 - -0.1 2,016,595 - -0.2 2,016,683 + +0.3 2,016,684 - -0.5 2,016,764 + +0.0 2,016,764 + +0.6 2,016,764 + -0.3 2,016,764 + -0.5 2,016,765 - -1.6 2,016,765 - -0.1 2,016,769 + +0.3 2,016,769 + +0.4 2,016,769 + +0.7 2,016,769 + -1.0 2,016,770 - -0.1 2,016,770 - +2.0 2,016,770 - -0.0 2,016,770 - -0.9 2,016,770 - +0.7 2,016,770 - -1.1 2,016,773 + -1.5 2,016,774 - +1.9 2,016,848 + Psest_1907 0.24 +0.3
Or see this region's nucleotide sequence