Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1812

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1811 and Psest_1812 overlap by 4 nucleotidesPsest_1812 and Psest_1813 are separated by 10 nucleotides Psest_1811: Psest_1811 - UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase, at 1,910,723 to 1,911,883 _1811 Psest_1812: Psest_1812 - pseudaminic acid CMP-transferase, at 1,911,880 to 1,912,572 _1812 Psest_1813: Psest_1813 - pseudaminic acid biosynthesis-associated protein PseG, at 1,912,583 to 1,913,704 _1813 Position (kb) 1911 1912 1913Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1911.710 kb on + strand, within Psest_1811at 1911.921 kb on + strandat 1911.921 kb on + strandat 1911.921 kb on + strandat 1911.922 kb on - strandat 1911.960 kb on + strand, within Psest_1812at 1911.960 kb on + strand, within Psest_1812at 1911.961 kb on - strand, within Psest_1812at 1912.192 kb on + strand, within Psest_1812at 1912.192 kb on + strand, within Psest_1812at 1912.192 kb on + strand, within Psest_1812at 1912.192 kb on + strand, within Psest_1812at 1912.193 kb on - strand, within Psest_1812at 1912.267 kb on + strand, within Psest_1812at 1912.284 kb on + strand, within Psest_1812at 1912.284 kb on + strand, within Psest_1812at 1912.284 kb on + strand, within Psest_1812at 1912.285 kb on - strand, within Psest_1812at 1912.285 kb on - strand, within Psest_1812at 1912.285 kb on - strand, within Psest_1812at 1912.285 kb on - strand, within Psest_1812at 1912.285 kb on - strand, within Psest_1812at 1912.285 kb on - strand, within Psest_1812at 1912.285 kb on - strand, within Psest_1812at 1912.288 kb on + strand, within Psest_1812at 1912.288 kb on + strand, within Psest_1812at 1912.288 kb on + strand, within Psest_1812at 1912.358 kb on - strand, within Psest_1812at 1912.358 kb on - strand, within Psest_1812at 1912.358 kb on - strand, within Psest_1812at 1912.414 kb on + strand, within Psest_1812at 1912.414 kb on + strand, within Psest_1812at 1912.414 kb on + strand, within Psest_1812at 1912.414 kb on + strand, within Psest_1812at 1912.414 kb on + strand, within Psest_1812at 1912.414 kb on + strand, within Psest_1812at 1912.414 kb on + strand, within Psest_1812at 1912.415 kb on - strand, within Psest_1812at 1912.440 kb on - strand, within Psest_1812at 1912.478 kb on + strand, within Psest_1812at 1912.478 kb on + strand, within Psest_1812at 1912.512 kb on + strandat 1912.512 kb on + strandat 1912.512 kb on + strandat 1912.513 kb on - strandat 1912.513 kb on - strandat 1912.513 kb on - strandat 1912.624 kb on + strandat 1912.745 kb on + strand, within Psest_1813at 1912.745 kb on + strand, within Psest_1813at 1912.745 kb on + strand, within Psest_1813at 1912.745 kb on + strand, within Psest_1813at 1912.745 kb on + strand, within Psest_1813at 1912.745 kb on + strand, within Psest_1813at 1912.746 kb on - strand, within Psest_1813at 1912.746 kb on - strand, within Psest_1813at 1912.746 kb on - strand, within Psest_1813at 1912.746 kb on - strand, within Psest_1813at 1912.746 kb on - strand, within Psest_1813at 1912.746 kb on - strand, within Psest_1813at 1912.746 kb on - strand, within Psest_1813at 1912.747 kb on + strand, within Psest_1813at 1912.748 kb on - strand, within Psest_1813at 1912.777 kb on + strand, within Psest_1813at 1912.777 kb on + strand, within Psest_1813at 1912.777 kb on + strand, within Psest_1813at 1912.777 kb on + strand, within Psest_1813at 1912.778 kb on - strand, within Psest_1813at 1912.778 kb on - strand, within Psest_1813at 1912.837 kb on + strand, within Psest_1813at 1912.838 kb on - strand, within Psest_1813at 1912.838 kb on - strand, within Psest_1813at 1912.838 kb on - strand, within Psest_1813at 1912.932 kb on - strand, within Psest_1813at 1913.046 kb on - strand, within Psest_1813at 1913.046 kb on - strand, within Psest_1813at 1913.067 kb on - strand, within Psest_1813at 1913.067 kb on - strand, within Psest_1813at 1913.154 kb on - strand, within Psest_1813at 1913.154 kb on - strand, within Psest_1813at 1913.154 kb on - strand, within Psest_1813at 1913.155 kb on + strand, within Psest_1813at 1913.156 kb on - strand, within Psest_1813at 1913.156 kb on - strand, within Psest_1813at 1913.156 kb on - strand, within Psest_1813at 1913.287 kb on + strand, within Psest_1813at 1913.288 kb on - strand, within Psest_1813at 1913.288 kb on - strand, within Psest_1813at 1913.288 kb on - strand, within Psest_1813at 1913.328 kb on + strand, within Psest_1813at 1913.328 kb on + strand, within Psest_1813at 1913.329 kb on - strand, within Psest_1813at 1913.344 kb on + strand, within Psest_1813at 1913.344 kb on + strand, within Psest_1813at 1913.344 kb on + strand, within Psest_1813at 1913.344 kb on + strand, within Psest_1813at 1913.344 kb on + strand, within Psest_1813at 1913.344 kb on + strand, within Psest_1813at 1913.344 kb on + strand, within Psest_1813at 1913.344 kb on + strand, within Psest_1813at 1913.344 kb on + strand, within Psest_1813at 1913.345 kb on - strand, within Psest_1813at 1913.345 kb on - strand, within Psest_1813at 1913.345 kb on - strand, within Psest_1813at 1913.345 kb on - strand, within Psest_1813at 1913.345 kb on - strand, within Psest_1813at 1913.345 kb on - strand, within Psest_1813at 1913.345 kb on - strand, within Psest_1813at 1913.345 kb on - strand, within Psest_1813at 1913.345 kb on - strand, within Psest_1813at 1913.481 kb on + strand, within Psest_1813

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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1,911,710 + Psest_1811 0.85 -1.0
1,911,921 + +2.3
1,911,921 + +2.5
1,911,921 + +0.1
1,911,922 - +1.2
1,911,960 + Psest_1812 0.12 -0.4
1,911,960 + Psest_1812 0.12 -0.1
1,911,961 - Psest_1812 0.12 +1.8
1,912,192 + Psest_1812 0.45 +0.2
1,912,192 + Psest_1812 0.45 -0.6
1,912,192 + Psest_1812 0.45 +1.4
1,912,192 + Psest_1812 0.45 +1.4
1,912,193 - Psest_1812 0.45 +3.7
1,912,267 + Psest_1812 0.56 +0.8
1,912,284 + Psest_1812 0.58 +1.6
1,912,284 + Psest_1812 0.58 +0.7
1,912,284 + Psest_1812 0.58 +1.9
1,912,285 - Psest_1812 0.58 +1.1
1,912,285 - Psest_1812 0.58 +0.3
1,912,285 - Psest_1812 0.58 +1.7
1,912,285 - Psest_1812 0.58 +0.3
1,912,285 - Psest_1812 0.58 -0.3
1,912,285 - Psest_1812 0.58 +1.9
1,912,285 - Psest_1812 0.58 +1.0
1,912,288 + Psest_1812 0.59 +0.3
1,912,288 + Psest_1812 0.59 +0.6
1,912,288 + Psest_1812 0.59 +1.0
1,912,358 - Psest_1812 0.69 +0.8
1,912,358 - Psest_1812 0.69 -1.6
1,912,358 - Psest_1812 0.69 +2.5
1,912,414 + Psest_1812 0.77 +2.1
1,912,414 + Psest_1812 0.77 +0.7
1,912,414 + Psest_1812 0.77 -0.3
1,912,414 + Psest_1812 0.77 +1.0
1,912,414 + Psest_1812 0.77 +0.2
1,912,414 + Psest_1812 0.77 +2.0
1,912,414 + Psest_1812 0.77 +1.6
1,912,415 - Psest_1812 0.77 -0.9
1,912,440 - Psest_1812 0.81 +1.7
1,912,478 + Psest_1812 0.86 +1.8
1,912,478 + Psest_1812 0.86 -0.8
1,912,512 + +0.7
1,912,512 + +0.3
1,912,512 + +0.8
1,912,513 - -1.3
1,912,513 - +1.2
1,912,513 - +2.2
1,912,624 + +0.0
1,912,745 + Psest_1813 0.14 -1.8
1,912,745 + Psest_1813 0.14 +3.1
1,912,745 + Psest_1813 0.14 +0.0
1,912,745 + Psest_1813 0.14 +0.0
1,912,745 + Psest_1813 0.14 +1.5
1,912,745 + Psest_1813 0.14 -1.5
1,912,746 - Psest_1813 0.15 +1.8
1,912,746 - Psest_1813 0.15 +2.8
1,912,746 - Psest_1813 0.15 +1.1
1,912,746 - Psest_1813 0.15 +0.3
1,912,746 - Psest_1813 0.15 -0.8
1,912,746 - Psest_1813 0.15 -1.1
1,912,746 - Psest_1813 0.15 -1.0
1,912,747 + Psest_1813 0.15 -0.3
1,912,748 - Psest_1813 0.15 -0.8
1,912,777 + Psest_1813 0.17 -0.3
1,912,777 + Psest_1813 0.17 +1.7
1,912,777 + Psest_1813 0.17 +0.6
1,912,777 + Psest_1813 0.17 +0.1
1,912,778 - Psest_1813 0.17 +1.9
1,912,778 - Psest_1813 0.17 +3.9
1,912,837 + Psest_1813 0.23 -1.5
1,912,838 - Psest_1813 0.23 +1.3
1,912,838 - Psest_1813 0.23 +2.6
1,912,838 - Psest_1813 0.23 -1.3
1,912,932 - Psest_1813 0.31 -0.5
1,913,046 - Psest_1813 0.41 -0.7
1,913,046 - Psest_1813 0.41 +0.2
1,913,067 - Psest_1813 0.43 +0.1
1,913,067 - Psest_1813 0.43 +1.1
1,913,154 - Psest_1813 0.51 +2.9
1,913,154 - Psest_1813 0.51 -1.0
1,913,154 - Psest_1813 0.51 +1.2
1,913,155 + Psest_1813 0.51 -1.0
1,913,156 - Psest_1813 0.51 +1.2
1,913,156 - Psest_1813 0.51 -0.3
1,913,156 - Psest_1813 0.51 -0.7
1,913,287 + Psest_1813 0.63 +0.6
1,913,288 - Psest_1813 0.63 -0.4
1,913,288 - Psest_1813 0.63 -2.5
1,913,288 - Psest_1813 0.63 -0.3
1,913,328 + Psest_1813 0.66 +0.8
1,913,328 + Psest_1813 0.66 +2.0
1,913,329 - Psest_1813 0.66 -3.8
1,913,344 + Psest_1813 0.68 -1.8
1,913,344 + Psest_1813 0.68 -1.4
1,913,344 + Psest_1813 0.68 -1.9
1,913,344 + Psest_1813 0.68 +1.3
1,913,344 + Psest_1813 0.68 -1.6
1,913,344 + Psest_1813 0.68 -2.6
1,913,344 + Psest_1813 0.68 -0.6
1,913,344 + Psest_1813 0.68 +0.1
1,913,344 + Psest_1813 0.68 -1.7
1,913,345 - Psest_1813 0.68 +1.9
1,913,345 - Psest_1813 0.68 -0.5
1,913,345 - Psest_1813 0.68 +1.1
1,913,345 - Psest_1813 0.68 +2.2
1,913,345 - Psest_1813 0.68 +0.8
1,913,345 - Psest_1813 0.68 +2.1
1,913,345 - Psest_1813 0.68 -0.4
1,913,345 - Psest_1813 0.68 +1.4
1,913,345 - Psest_1813 0.68 +0.8
1,913,481 + Psest_1813 0.80 +1.5

Or see this region's nucleotide sequence