Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1791

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1789 and Psest_1790 are separated by 174 nucleotidesPsest_1790 and Psest_1791 overlap by 8 nucleotidesPsest_1791 and Psest_1792 are separated by 4 nucleotides Psest_1789: Psest_1789 - Zn-dependent hydrolases, including glyoxylases, at 1,884,233 to 1,885,096 _1789 Psest_1790: Psest_1790 - ABC-type antimicrobial peptide transport system, ATPase component, at 1,885,271 to 1,886,002 _1790 Psest_1791: Psest_1791 - ABC-type transport system, involved in lipoprotein release, permease component, at 1,885,995 to 1,887,215 _1791 Psest_1792: Psest_1792 - RND family efflux transporter, MFP subunit, at 1,887,220 to 1,888,440 _1792 Position (kb) 1885 1886 1887 1888Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1885.007 kb on + strand, within Psest_1789at 1885.040 kb on + strandat 1885.041 kb on - strandat 1885.041 kb on - strandat 1885.041 kb on - strandat 1885.041 kb on - strandat 1885.041 kb on - strandat 1885.041 kb on - strandat 1885.041 kb on - strandat 1885.041 kb on - strandat 1885.041 kb on - strandat 1885.041 kb on - strandat 1885.041 kb on - strandat 1885.041 kb on - strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.044 kb on + strandat 1885.045 kb on - strandat 1885.045 kb on - strandat 1885.045 kb on - strandat 1885.045 kb on - strandat 1885.045 kb on - strandat 1885.045 kb on - strandat 1885.045 kb on - strandat 1885.045 kb on - strandat 1885.045 kb on - strandat 1885.045 kb on - strandat 1885.045 kb on - strandat 1885.045 kb on - strandat 1885.050 kb on + strandat 1885.050 kb on + strandat 1885.050 kb on + strandat 1885.050 kb on + strandat 1885.051 kb on - strandat 1885.051 kb on - strandat 1885.051 kb on - strandat 1885.051 kb on - strandat 1885.051 kb on - strandat 1885.051 kb on - strandat 1885.051 kb on - strandat 1885.051 kb on - strandat 1885.051 kb on - strandat 1885.051 kb on - strandat 1885.101 kb on + strandat 1885.171 kb on + strandat 1885.190 kb on + strandat 1885.191 kb on - strandat 1885.776 kb on + strand, within Psest_1790at 1885.776 kb on + strand, within Psest_1790at 1885.776 kb on + strand, within Psest_1790at 1885.777 kb on - strand, within Psest_1790at 1885.777 kb on - strand, within Psest_1790at 1885.819 kb on + strand, within Psest_1790at 1885.820 kb on - strand, within Psest_1790at 1885.824 kb on - strand, within Psest_1790at 1885.824 kb on - strand, within Psest_1790at 1885.828 kb on + strand, within Psest_1790at 1885.828 kb on + strand, within Psest_1790at 1885.828 kb on + strand, within Psest_1790at 1885.828 kb on + strand, within Psest_1790at 1885.828 kb on - strand, within Psest_1790at 1885.829 kb on - strand, within Psest_1790at 1885.879 kb on - strand, within Psest_1790at 1885.946 kb on + strandat 1885.946 kb on + strandat 1885.947 kb on - strandat 1885.947 kb on - strandat 1886.064 kb on + strandat 1886.064 kb on + strandat 1886.155 kb on - strand, within Psest_1791at 1886.155 kb on - strand, within Psest_1791at 1886.155 kb on - strand, within Psest_1791at 1886.404 kb on - strand, within Psest_1791at 1886.566 kb on + strand, within Psest_1791at 1886.567 kb on - strand, within Psest_1791at 1886.567 kb on - strand, within Psest_1791at 1886.567 kb on - strand, within Psest_1791at 1886.572 kb on + strand, within Psest_1791at 1886.573 kb on - strand, within Psest_1791at 1886.573 kb on - strand, within Psest_1791at 1887.397 kb on + strand, within Psest_1792at 1887.398 kb on - strand, within Psest_1792at 1887.400 kb on + strand, within Psest_1792at 1887.400 kb on + strand, within Psest_1792at 1887.400 kb on + strand, within Psest_1792at 1887.401 kb on - strand, within Psest_1792at 1887.401 kb on - strand, within Psest_1792at 1887.742 kb on + strand, within Psest_1792at 1887.742 kb on + strand, within Psest_1792at 1887.743 kb on - strand, within Psest_1792at 1887.787 kb on + strand, within Psest_1792at 1887.850 kb on + strand, within Psest_1792

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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1,885,007 + Psest_1789 0.90 +1.3
1,885,040 + -0.9
1,885,041 - -0.7
1,885,041 - -0.8
1,885,041 - +1.5
1,885,041 - +0.6
1,885,041 - -1.1
1,885,041 - -0.5
1,885,041 - -0.1
1,885,041 - -0.1
1,885,041 - +0.2
1,885,041 - -0.4
1,885,041 - -3.1
1,885,041 - +0.1
1,885,044 + +2.7
1,885,044 + -1.5
1,885,044 + -0.4
1,885,044 + +0.4
1,885,044 + -2.0
1,885,044 + -0.9
1,885,044 + +0.9
1,885,044 + +0.0
1,885,044 + -0.0
1,885,044 + -0.2
1,885,044 + +0.2
1,885,044 + +0.3
1,885,044 + +0.2
1,885,044 + +1.0
1,885,044 + +0.0
1,885,044 + +2.2
1,885,044 + +0.9
1,885,044 + +1.8
1,885,045 - +0.2
1,885,045 - +0.9
1,885,045 - +0.2
1,885,045 - +0.2
1,885,045 - -0.7
1,885,045 - -0.8
1,885,045 - +0.6
1,885,045 - -0.6
1,885,045 - -0.2
1,885,045 - -1.0
1,885,045 - +1.3
1,885,045 - -0.1
1,885,050 + +0.0
1,885,050 + +0.6
1,885,050 + -0.2
1,885,050 + -0.8
1,885,051 - +0.2
1,885,051 - -0.2
1,885,051 - -0.1
1,885,051 - -1.8
1,885,051 - -0.4
1,885,051 - +1.0
1,885,051 - -0.0
1,885,051 - -0.5
1,885,051 - +0.3
1,885,051 - +0.8
1,885,101 + +0.2
1,885,171 + +1.0
1,885,190 + -1.4
1,885,191 - -0.8
1,885,776 + Psest_1790 0.69 -0.4
1,885,776 + Psest_1790 0.69 +0.9
1,885,776 + Psest_1790 0.69 -0.4
1,885,777 - Psest_1790 0.69 +0.9
1,885,777 - Psest_1790 0.69 -0.3
1,885,819 + Psest_1790 0.75 -1.1
1,885,820 - Psest_1790 0.75 -1.3
1,885,824 - Psest_1790 0.76 -1.0
1,885,824 - Psest_1790 0.76 +1.1
1,885,828 + Psest_1790 0.76 -0.6
1,885,828 + Psest_1790 0.76 -0.2
1,885,828 + Psest_1790 0.76 +0.1
1,885,828 + Psest_1790 0.76 -0.5
1,885,828 - Psest_1790 0.76 +0.3
1,885,829 - Psest_1790 0.76 +0.9
1,885,879 - Psest_1790 0.83 -0.9
1,885,946 + +0.1
1,885,946 + +0.6
1,885,947 - +0.5
1,885,947 - +2.7
1,886,064 + -0.5
1,886,064 + -1.6
1,886,155 - Psest_1791 0.13 +0.9
1,886,155 - Psest_1791 0.13 -1.6
1,886,155 - Psest_1791 0.13 +1.7
1,886,404 - Psest_1791 0.33 +1.1
1,886,566 + Psest_1791 0.47 +0.0
1,886,567 - Psest_1791 0.47 +2.0
1,886,567 - Psest_1791 0.47 +1.3
1,886,567 - Psest_1791 0.47 -0.4
1,886,572 + Psest_1791 0.47 +1.0
1,886,573 - Psest_1791 0.47 +1.2
1,886,573 - Psest_1791 0.47 +2.0
1,887,397 + Psest_1792 0.14 +0.1
1,887,398 - Psest_1792 0.15 +0.6
1,887,400 + Psest_1792 0.15 +0.5
1,887,400 + Psest_1792 0.15 +0.0
1,887,400 + Psest_1792 0.15 -2.2
1,887,401 - Psest_1792 0.15 +1.2
1,887,401 - Psest_1792 0.15 -0.5
1,887,742 + Psest_1792 0.43 +0.9
1,887,742 + Psest_1792 0.43 -3.1
1,887,743 - Psest_1792 0.43 -0.4
1,887,787 + Psest_1792 0.46 -2.0
1,887,850 + Psest_1792 0.52 +0.7

Or see this region's nucleotide sequence