Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1789 and Psest_1790 are separated by 174 nucleotides Psest_1790 and Psest_1791 overlap by 8 nucleotides Psest_1791 and Psest_1792 are separated by 4 nucleotides
Psest_1789: Psest_1789 - Zn-dependent hydrolases, including glyoxylases, at 1,884,233 to 1,885,096
_1789
Psest_1790: Psest_1790 - ABC-type antimicrobial peptide transport system, ATPase component, at 1,885,271 to 1,886,002
_1790
Psest_1791: Psest_1791 - ABC-type transport system, involved in lipoprotein release, permease component, at 1,885,995 to 1,887,215
_1791
Psest_1792: Psest_1792 - RND family efflux transporter, MFP subunit, at 1,887,220 to 1,888,440
_1792
Position (kb)
1885
1886
1887
1888 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1885.007 kb on + strand, within Psest_1789 at 1885.040 kb on + strand at 1885.041 kb on - strand at 1885.041 kb on - strand at 1885.041 kb on - strand at 1885.041 kb on - strand at 1885.041 kb on - strand at 1885.041 kb on - strand at 1885.041 kb on - strand at 1885.041 kb on - strand at 1885.041 kb on - strand at 1885.041 kb on - strand at 1885.041 kb on - strand at 1885.041 kb on - strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.044 kb on + strand at 1885.045 kb on - strand at 1885.045 kb on - strand at 1885.045 kb on - strand at 1885.045 kb on - strand at 1885.045 kb on - strand at 1885.045 kb on - strand at 1885.045 kb on - strand at 1885.045 kb on - strand at 1885.045 kb on - strand at 1885.045 kb on - strand at 1885.045 kb on - strand at 1885.045 kb on - strand at 1885.050 kb on + strand at 1885.050 kb on + strand at 1885.050 kb on + strand at 1885.050 kb on + strand at 1885.051 kb on - strand at 1885.051 kb on - strand at 1885.051 kb on - strand at 1885.051 kb on - strand at 1885.051 kb on - strand at 1885.051 kb on - strand at 1885.051 kb on - strand at 1885.051 kb on - strand at 1885.051 kb on - strand at 1885.051 kb on - strand at 1885.101 kb on + strand at 1885.171 kb on + strand at 1885.190 kb on + strand at 1885.191 kb on - strand at 1885.776 kb on + strand, within Psest_1790 at 1885.776 kb on + strand, within Psest_1790 at 1885.776 kb on + strand, within Psest_1790 at 1885.777 kb on - strand, within Psest_1790 at 1885.777 kb on - strand, within Psest_1790 at 1885.819 kb on + strand, within Psest_1790 at 1885.820 kb on - strand, within Psest_1790 at 1885.824 kb on - strand, within Psest_1790 at 1885.824 kb on - strand, within Psest_1790 at 1885.828 kb on + strand, within Psest_1790 at 1885.828 kb on + strand, within Psest_1790 at 1885.828 kb on + strand, within Psest_1790 at 1885.828 kb on + strand, within Psest_1790 at 1885.828 kb on - strand, within Psest_1790 at 1885.829 kb on - strand, within Psest_1790 at 1885.879 kb on - strand, within Psest_1790 at 1885.946 kb on + strand at 1885.946 kb on + strand at 1885.947 kb on - strand at 1885.947 kb on - strand at 1886.064 kb on + strand at 1886.064 kb on + strand at 1886.155 kb on - strand, within Psest_1791 at 1886.155 kb on - strand, within Psest_1791 at 1886.155 kb on - strand, within Psest_1791 at 1886.404 kb on - strand, within Psest_1791 at 1886.566 kb on + strand, within Psest_1791 at 1886.567 kb on - strand, within Psest_1791 at 1886.567 kb on - strand, within Psest_1791 at 1886.567 kb on - strand, within Psest_1791 at 1886.572 kb on + strand, within Psest_1791 at 1886.573 kb on - strand, within Psest_1791 at 1886.573 kb on - strand, within Psest_1791 at 1887.397 kb on + strand, within Psest_1792 at 1887.398 kb on - strand, within Psest_1792 at 1887.400 kb on + strand, within Psest_1792 at 1887.400 kb on + strand, within Psest_1792 at 1887.400 kb on + strand, within Psest_1792 at 1887.401 kb on - strand, within Psest_1792 at 1887.401 kb on - strand, within Psest_1792 at 1887.742 kb on + strand, within Psest_1792 at 1887.742 kb on + strand, within Psest_1792 at 1887.743 kb on - strand, within Psest_1792 at 1887.787 kb on + strand, within Psest_1792 at 1887.850 kb on + strand, within Psest_1792
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 1,885,007 + Psest_1789 0.90 +1.3 1,885,040 + -0.9 1,885,041 - -0.7 1,885,041 - -0.8 1,885,041 - +1.5 1,885,041 - +0.6 1,885,041 - -1.1 1,885,041 - -0.5 1,885,041 - -0.1 1,885,041 - -0.1 1,885,041 - +0.2 1,885,041 - -0.4 1,885,041 - -3.1 1,885,041 - +0.1 1,885,044 + +2.7 1,885,044 + -1.5 1,885,044 + -0.4 1,885,044 + +0.4 1,885,044 + -2.0 1,885,044 + -0.9 1,885,044 + +0.9 1,885,044 + +0.0 1,885,044 + -0.0 1,885,044 + -0.2 1,885,044 + +0.2 1,885,044 + +0.3 1,885,044 + +0.2 1,885,044 + +1.0 1,885,044 + +0.0 1,885,044 + +2.2 1,885,044 + +0.9 1,885,044 + +1.8 1,885,045 - +0.2 1,885,045 - +0.9 1,885,045 - +0.2 1,885,045 - +0.2 1,885,045 - -0.7 1,885,045 - -0.8 1,885,045 - +0.6 1,885,045 - -0.6 1,885,045 - -0.2 1,885,045 - -1.0 1,885,045 - +1.3 1,885,045 - -0.1 1,885,050 + +0.0 1,885,050 + +0.6 1,885,050 + -0.2 1,885,050 + -0.8 1,885,051 - +0.2 1,885,051 - -0.2 1,885,051 - -0.1 1,885,051 - -1.8 1,885,051 - -0.4 1,885,051 - +1.0 1,885,051 - -0.0 1,885,051 - -0.5 1,885,051 - +0.3 1,885,051 - +0.8 1,885,101 + +0.2 1,885,171 + +1.0 1,885,190 + -1.4 1,885,191 - -0.8 1,885,776 + Psest_1790 0.69 -0.4 1,885,776 + Psest_1790 0.69 +0.9 1,885,776 + Psest_1790 0.69 -0.4 1,885,777 - Psest_1790 0.69 +0.9 1,885,777 - Psest_1790 0.69 -0.3 1,885,819 + Psest_1790 0.75 -1.1 1,885,820 - Psest_1790 0.75 -1.3 1,885,824 - Psest_1790 0.76 -1.0 1,885,824 - Psest_1790 0.76 +1.1 1,885,828 + Psest_1790 0.76 -0.6 1,885,828 + Psest_1790 0.76 -0.2 1,885,828 + Psest_1790 0.76 +0.1 1,885,828 + Psest_1790 0.76 -0.5 1,885,828 - Psest_1790 0.76 +0.3 1,885,829 - Psest_1790 0.76 +0.9 1,885,879 - Psest_1790 0.83 -0.9 1,885,946 + +0.1 1,885,946 + +0.6 1,885,947 - +0.5 1,885,947 - +2.7 1,886,064 + -0.5 1,886,064 + -1.6 1,886,155 - Psest_1791 0.13 +0.9 1,886,155 - Psest_1791 0.13 -1.6 1,886,155 - Psest_1791 0.13 +1.7 1,886,404 - Psest_1791 0.33 +1.1 1,886,566 + Psest_1791 0.47 +0.0 1,886,567 - Psest_1791 0.47 +2.0 1,886,567 - Psest_1791 0.47 +1.3 1,886,567 - Psest_1791 0.47 -0.4 1,886,572 + Psest_1791 0.47 +1.0 1,886,573 - Psest_1791 0.47 +1.2 1,886,573 - Psest_1791 0.47 +2.0 1,887,397 + Psest_1792 0.14 +0.1 1,887,398 - Psest_1792 0.15 +0.6 1,887,400 + Psest_1792 0.15 +0.5 1,887,400 + Psest_1792 0.15 +0.0 1,887,400 + Psest_1792 0.15 -2.2 1,887,401 - Psest_1792 0.15 +1.2 1,887,401 - Psest_1792 0.15 -0.5 1,887,742 + Psest_1792 0.43 +0.9 1,887,742 + Psest_1792 0.43 -3.1 1,887,743 - Psest_1792 0.43 -0.4 1,887,787 + Psest_1792 0.46 -2.0 1,887,850 + Psest_1792 0.52 +0.7
Or see this region's nucleotide sequence