Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1719

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1717 and Psest_1718 are separated by 239 nucleotidesPsest_1718 and Psest_1719 are separated by 13 nucleotidesPsest_1719 and Psest_1720 overlap by 8 nucleotides Psest_1717: Psest_1717 - benzoate transporter, at 1,823,283 to 1,824,470 _1717 Psest_1718: Psest_1718 - flagellar hook-basal body complex protein FliE, at 1,824,710 to 1,825,039 _1718 Psest_1719: Psest_1719 - flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF), at 1,825,053 to 1,826,837 _1719 Psest_1720: Psest_1720 - flagellar motor switch protein FliG, at 1,826,830 to 1,827,846 _1720 Position (kb) 1825 1826 1827Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1824.363 kb on + strandat 1824.364 kb on - strandat 1824.377 kb on + strandat 1824.378 kb on - strandat 1824.428 kb on + strandat 1824.480 kb on + strandat 1824.484 kb on + strandat 1824.484 kb on + strandat 1824.485 kb on - strandat 1824.485 kb on - strandat 1824.485 kb on - strandat 1824.487 kb on + strandat 1824.487 kb on + strandat 1824.488 kb on - strandat 1824.522 kb on + strandat 1824.522 kb on + strandat 1824.523 kb on - strandat 1824.616 kb on - strandat 1824.707 kb on + strandat 1824.888 kb on + strand, within Psest_1718at 1824.987 kb on + strand, within Psest_1718at 1824.987 kb on + strand, within Psest_1718at 1824.988 kb on - strand, within Psest_1718at 1824.988 kb on - strand, within Psest_1718at 1824.988 kb on - strand, within Psest_1718at 1824.988 kb on - strand, within Psest_1718at 1824.991 kb on + strand, within Psest_1718at 1824.992 kb on - strand, within Psest_1718at 1824.992 kb on - strand, within Psest_1718at 1824.992 kb on - strand, within Psest_1718at 1825.149 kb on - strandat 1825.322 kb on + strand, within Psest_1719at 1825.639 kb on - strand, within Psest_1719at 1825.833 kb on + strand, within Psest_1719at 1826.223 kb on + strand, within Psest_1719at 1826.224 kb on - strand, within Psest_1719at 1826.224 kb on - strand, within Psest_1719at 1826.247 kb on + strand, within Psest_1719at 1826.247 kb on + strand, within Psest_1719at 1826.248 kb on - strand, within Psest_1719at 1826.248 kb on - strand, within Psest_1719at 1826.248 kb on - strand, within Psest_1719at 1826.248 kb on - strand, within Psest_1719at 1826.248 kb on - strand, within Psest_1719at 1826.248 kb on - strand, within Psest_1719at 1826.248 kb on - strand, within Psest_1719at 1826.249 kb on + strand, within Psest_1719at 1826.250 kb on - strand, within Psest_1719at 1826.250 kb on - strand, within Psest_1719at 1827.073 kb on + strand, within Psest_1720at 1827.073 kb on + strand, within Psest_1720at 1827.073 kb on + strand, within Psest_1720at 1827.073 kb on + strand, within Psest_1720at 1827.074 kb on - strand, within Psest_1720at 1827.136 kb on - strand, within Psest_1720at 1827.153 kb on + strand, within Psest_1720at 1827.251 kb on - strand, within Psest_1720at 1827.425 kb on + strand, within Psest_1720at 1827.425 kb on + strand, within Psest_1720at 1827.425 kb on + strand, within Psest_1720at 1827.426 kb on - strand, within Psest_1720at 1827.460 kb on + strand, within Psest_1720at 1827.460 kb on + strand, within Psest_1720at 1827.460 kb on + strand, within Psest_1720at 1827.460 kb on + strand, within Psest_1720at 1827.460 kb on + strand, within Psest_1720at 1827.460 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.543 kb on + strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.544 kb on - strand, within Psest_1720at 1827.815 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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1,824,363 + -0.8
1,824,364 - -1.1
1,824,377 + +1.2
1,824,378 - -0.5
1,824,428 + -0.4
1,824,480 + +1.1
1,824,484 + +0.2
1,824,484 + -0.1
1,824,485 - +1.0
1,824,485 - -1.1
1,824,485 - -0.3
1,824,487 + -0.2
1,824,487 + -0.1
1,824,488 - -0.5
1,824,522 + -0.5
1,824,522 + -2.2
1,824,523 - +0.2
1,824,616 - +0.2
1,824,707 + -1.5
1,824,888 + Psest_1718 0.54 +1.5
1,824,987 + Psest_1718 0.84 +0.8
1,824,987 + Psest_1718 0.84 -1.4
1,824,988 - Psest_1718 0.84 +0.4
1,824,988 - Psest_1718 0.84 +0.4
1,824,988 - Psest_1718 0.84 +0.5
1,824,988 - Psest_1718 0.84 +2.8
1,824,991 + Psest_1718 0.85 +1.0
1,824,992 - Psest_1718 0.85 +1.4
1,824,992 - Psest_1718 0.85 +0.3
1,824,992 - Psest_1718 0.85 -0.2
1,825,149 - +1.1
1,825,322 + Psest_1719 0.15 +0.4
1,825,639 - Psest_1719 0.33 +0.1
1,825,833 + Psest_1719 0.44 +1.1
1,826,223 + Psest_1719 0.66 -1.1
1,826,224 - Psest_1719 0.66 +3.0
1,826,224 - Psest_1719 0.66 +2.0
1,826,247 + Psest_1719 0.67 +1.7
1,826,247 + Psest_1719 0.67 -0.7
1,826,248 - Psest_1719 0.67 +0.5
1,826,248 - Psest_1719 0.67 -0.2
1,826,248 - Psest_1719 0.67 +0.4
1,826,248 - Psest_1719 0.67 -0.7
1,826,248 - Psest_1719 0.67 +0.3
1,826,248 - Psest_1719 0.67 +1.5
1,826,248 - Psest_1719 0.67 +0.7
1,826,249 + Psest_1719 0.67 +0.3
1,826,250 - Psest_1719 0.67 +2.5
1,826,250 - Psest_1719 0.67 +2.5
1,827,073 + Psest_1720 0.24 -0.2
1,827,073 + Psest_1720 0.24 +1.8
1,827,073 + Psest_1720 0.24 +1.0
1,827,073 + Psest_1720 0.24 +2.1
1,827,074 - Psest_1720 0.24 -1.1
1,827,136 - Psest_1720 0.30 -1.4
1,827,153 + Psest_1720 0.32 -0.0
1,827,251 - Psest_1720 0.41 +0.8
1,827,425 + Psest_1720 0.59 +1.0
1,827,425 + Psest_1720 0.59 -1.4
1,827,425 + Psest_1720 0.59 -0.7
1,827,426 - Psest_1720 0.59 +1.1
1,827,460 + Psest_1720 0.62 -1.0
1,827,460 + Psest_1720 0.62 -0.3
1,827,460 + Psest_1720 0.62 -0.6
1,827,460 + Psest_1720 0.62 +0.2
1,827,460 + Psest_1720 0.62 +1.9
1,827,460 + Psest_1720 0.62 +1.8
1,827,543 + Psest_1720 0.70 -0.4
1,827,543 + Psest_1720 0.70 +1.6
1,827,543 + Psest_1720 0.70 +0.6
1,827,543 + Psest_1720 0.70 +1.2
1,827,543 + Psest_1720 0.70 +0.6
1,827,543 + Psest_1720 0.70 +0.6
1,827,543 + Psest_1720 0.70 +0.8
1,827,543 + Psest_1720 0.70 +0.1
1,827,544 - Psest_1720 0.70 -0.9
1,827,544 - Psest_1720 0.70 -0.1
1,827,544 - Psest_1720 0.70 -0.0
1,827,544 - Psest_1720 0.70 -1.3
1,827,544 - Psest_1720 0.70 +1.2
1,827,544 - Psest_1720 0.70 -0.0
1,827,544 - Psest_1720 0.70 +0.7
1,827,544 - Psest_1720 0.70 -0.6
1,827,544 - Psest_1720 0.70 +0.7
1,827,544 - Psest_1720 0.70 +1.0
1,827,544 - Psest_1720 0.70 +1.8
1,827,544 - Psest_1720 0.70 +1.4
1,827,544 - Psest_1720 0.70 +0.0
1,827,544 - Psest_1720 0.70 -0.1
1,827,815 + -0.8

Or see this region's nucleotide sequence