Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1522

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1519 and Psest_1520 are separated by 70 nucleotidesPsest_1520 and Psest_1521 are separated by 56 nucleotidesPsest_1521 and Psest_1522 are separated by 8 nucleotidesPsest_1522 and Psest_1523 are separated by 37 nucleotides Psest_1519: Psest_1519 - DNA polymerase elongation subunit (family B), at 1,617,390 to 1,619,765 _1519 Psest_1520: Psest_1520 - hypothetical protein, at 1,619,836 to 1,620,144 _1520 Psest_1521: Psest_1521 - Uncharacterized protein conserved in bacteria, at 1,620,201 to 1,620,545 _1521 Psest_1522: Psest_1522 - hypothetical protein, at 1,620,554 to 1,620,745 _1522 Psest_1523: Psest_1523 - Dicarboxylate transport., at 1,620,783 to 1,623,344 _1523 Position (kb) 1620 1621Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1619.578 kb on - strandat 1619.601 kb on + strandat 1619.601 kb on + strandat 1619.601 kb on + strandat 1619.667 kb on + strandat 1619.667 kb on + strandat 1619.668 kb on - strandat 1619.668 kb on - strandat 1619.668 kb on - strandat 1619.835 kb on + strandat 1619.835 kb on + strandat 1619.835 kb on + strandat 1619.835 kb on + strandat 1619.835 kb on + strandat 1619.835 kb on + strandat 1619.835 kb on + strandat 1619.836 kb on - strandat 1619.836 kb on - strandat 1619.836 kb on - strandat 1619.866 kb on + strandat 1619.867 kb on - strand, within Psest_1520at 1619.908 kb on - strand, within Psest_1520at 1619.953 kb on + strand, within Psest_1520at 1619.953 kb on + strand, within Psest_1520at 1620.025 kb on + strand, within Psest_1520at 1620.025 kb on + strand, within Psest_1520at 1620.025 kb on + strand, within Psest_1520at 1620.026 kb on - strand, within Psest_1520at 1620.070 kb on + strand, within Psest_1520at 1620.142 kb on + strandat 1620.142 kb on + strandat 1620.142 kb on + strandat 1620.142 kb on + strandat 1620.143 kb on - strandat 1620.143 kb on - strandat 1620.378 kb on - strand, within Psest_1521at 1620.535 kb on + strandat 1620.536 kb on - strandat 1620.536 kb on - strandat 1620.612 kb on + strand, within Psest_1522at 1620.612 kb on + strand, within Psest_1522at 1620.612 kb on + strand, within Psest_1522at 1620.612 kb on + strand, within Psest_1522at 1620.689 kb on - strand, within Psest_1522at 1620.837 kb on + strandat 1620.838 kb on - strandat 1620.939 kb on + strandat 1620.970 kb on + strandat 1621.448 kb on + strand, within Psest_1523at 1621.522 kb on + strand, within Psest_1523at 1621.523 kb on - strand, within Psest_1523at 1621.523 kb on - strand, within Psest_1523at 1621.523 kb on - strand, within Psest_1523at 1621.523 kb on - strand, within Psest_1523at 1621.710 kb on + strand, within Psest_1523at 1621.710 kb on + strand, within Psest_1523at 1621.710 kb on + strand, within Psest_1523at 1621.710 kb on + strand, within Psest_1523at 1621.710 kb on + strand, within Psest_1523at 1621.711 kb on - strand, within Psest_1523at 1621.711 kb on - strand, within Psest_1523at 1621.711 kb on - strand, within Psest_1523at 1621.711 kb on - strand, within Psest_1523at 1621.711 kb on - strand, within Psest_1523at 1621.716 kb on + strand, within Psest_1523at 1621.716 kb on + strand, within Psest_1523at 1621.717 kb on - strand, within Psest_1523at 1621.717 kb on - strand, within Psest_1523at 1621.717 kb on - strand, within Psest_1523

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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1,619,578 - +2.0
1,619,601 + +0.2
1,619,601 + +0.9
1,619,601 + +0.3
1,619,667 + +0.3
1,619,667 + +1.1
1,619,668 - -0.8
1,619,668 - -1.1
1,619,668 - +0.6
1,619,835 + +0.6
1,619,835 + -0.2
1,619,835 + -0.1
1,619,835 + +0.8
1,619,835 + -1.2
1,619,835 + -0.1
1,619,835 + -1.1
1,619,836 - -0.4
1,619,836 - -0.3
1,619,836 - +0.3
1,619,866 + +1.0
1,619,867 - Psest_1520 0.10 +1.4
1,619,908 - Psest_1520 0.23 +0.6
1,619,953 + Psest_1520 0.38 +0.8
1,619,953 + Psest_1520 0.38 -1.2
1,620,025 + Psest_1520 0.61 +0.7
1,620,025 + Psest_1520 0.61 -0.9
1,620,025 + Psest_1520 0.61 -1.3
1,620,026 - Psest_1520 0.61 -0.3
1,620,070 + Psest_1520 0.76 +1.4
1,620,142 + -0.0
1,620,142 + -3.0
1,620,142 + +1.6
1,620,142 + +0.9
1,620,143 - +0.1
1,620,143 - -0.8
1,620,378 - Psest_1521 0.51 -0.5
1,620,535 + -0.5
1,620,536 - +1.1
1,620,536 - +0.1
1,620,612 + Psest_1522 0.30 -0.2
1,620,612 + Psest_1522 0.30 -0.5
1,620,612 + Psest_1522 0.30 +1.0
1,620,612 + Psest_1522 0.30 -1.8
1,620,689 - Psest_1522 0.70 +2.1
1,620,837 + -2.0
1,620,838 - +2.5
1,620,939 + +0.0
1,620,970 + +0.2
1,621,448 + Psest_1523 0.26 +2.0
1,621,522 + Psest_1523 0.29 +2.2
1,621,523 - Psest_1523 0.29 -0.2
1,621,523 - Psest_1523 0.29 -0.5
1,621,523 - Psest_1523 0.29 -1.8
1,621,523 - Psest_1523 0.29 -3.2
1,621,710 + Psest_1523 0.36 -1.0
1,621,710 + Psest_1523 0.36 -0.3
1,621,710 + Psest_1523 0.36 -0.7
1,621,710 + Psest_1523 0.36 -0.1
1,621,710 + Psest_1523 0.36 +0.7
1,621,711 - Psest_1523 0.36 +0.6
1,621,711 - Psest_1523 0.36 +0.4
1,621,711 - Psest_1523 0.36 +0.4
1,621,711 - Psest_1523 0.36 -1.0
1,621,711 - Psest_1523 0.36 +0.4
1,621,716 + Psest_1523 0.36 +1.1
1,621,716 + Psest_1523 0.36 +0.2
1,621,717 - Psest_1523 0.36 -0.3
1,621,717 - Psest_1523 0.36 +0.2
1,621,717 - Psest_1523 0.36 -0.5

Or see this region's nucleotide sequence