Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1519 and Psest_1520 are separated by 70 nucleotides Psest_1520 and Psest_1521 are separated by 56 nucleotides Psest_1521 and Psest_1522 are separated by 8 nucleotides Psest_1522 and Psest_1523 are separated by 37 nucleotides
Psest_1519: Psest_1519 - DNA polymerase elongation subunit (family B), at 1,617,390 to 1,619,765
_1519
Psest_1520: Psest_1520 - hypothetical protein, at 1,619,836 to 1,620,144
_1520
Psest_1521: Psest_1521 - Uncharacterized protein conserved in bacteria, at 1,620,201 to 1,620,545
_1521
Psest_1522: Psest_1522 - hypothetical protein, at 1,620,554 to 1,620,745
_1522
Psest_1523: Psest_1523 - Dicarboxylate transport., at 1,620,783 to 1,623,344
_1523
Position (kb)
1620
1621 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1619.578 kb on - strand at 1619.601 kb on + strand at 1619.601 kb on + strand at 1619.601 kb on + strand at 1619.667 kb on + strand at 1619.667 kb on + strand at 1619.668 kb on - strand at 1619.668 kb on - strand at 1619.668 kb on - strand at 1619.835 kb on + strand at 1619.835 kb on + strand at 1619.835 kb on + strand at 1619.835 kb on + strand at 1619.835 kb on + strand at 1619.835 kb on + strand at 1619.835 kb on + strand at 1619.836 kb on - strand at 1619.836 kb on - strand at 1619.836 kb on - strand at 1619.866 kb on + strand at 1619.867 kb on - strand, within Psest_1520 at 1619.908 kb on - strand, within Psest_1520 at 1619.953 kb on + strand, within Psest_1520 at 1619.953 kb on + strand, within Psest_1520 at 1620.025 kb on + strand, within Psest_1520 at 1620.025 kb on + strand, within Psest_1520 at 1620.025 kb on + strand, within Psest_1520 at 1620.026 kb on - strand, within Psest_1520 at 1620.070 kb on + strand, within Psest_1520 at 1620.142 kb on + strand at 1620.142 kb on + strand at 1620.142 kb on + strand at 1620.142 kb on + strand at 1620.143 kb on - strand at 1620.143 kb on - strand at 1620.378 kb on - strand, within Psest_1521 at 1620.535 kb on + strand at 1620.536 kb on - strand at 1620.536 kb on - strand at 1620.612 kb on + strand, within Psest_1522 at 1620.612 kb on + strand, within Psest_1522 at 1620.612 kb on + strand, within Psest_1522 at 1620.612 kb on + strand, within Psest_1522 at 1620.689 kb on - strand, within Psest_1522 at 1620.837 kb on + strand at 1620.838 kb on - strand at 1620.939 kb on + strand at 1620.970 kb on + strand at 1621.448 kb on + strand, within Psest_1523 at 1621.522 kb on + strand, within Psest_1523 at 1621.523 kb on - strand, within Psest_1523 at 1621.523 kb on - strand, within Psest_1523 at 1621.523 kb on - strand, within Psest_1523 at 1621.523 kb on - strand, within Psest_1523 at 1621.710 kb on + strand, within Psest_1523 at 1621.710 kb on + strand, within Psest_1523 at 1621.710 kb on + strand, within Psest_1523 at 1621.710 kb on + strand, within Psest_1523 at 1621.710 kb on + strand, within Psest_1523 at 1621.711 kb on - strand, within Psest_1523 at 1621.711 kb on - strand, within Psest_1523 at 1621.711 kb on - strand, within Psest_1523 at 1621.711 kb on - strand, within Psest_1523 at 1621.711 kb on - strand, within Psest_1523 at 1621.716 kb on + strand, within Psest_1523 at 1621.716 kb on + strand, within Psest_1523 at 1621.717 kb on - strand, within Psest_1523 at 1621.717 kb on - strand, within Psest_1523 at 1621.717 kb on - strand, within Psest_1523
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 1,619,578 - +2.0 1,619,601 + +0.2 1,619,601 + +0.9 1,619,601 + +0.3 1,619,667 + +0.3 1,619,667 + +1.1 1,619,668 - -0.8 1,619,668 - -1.1 1,619,668 - +0.6 1,619,835 + +0.6 1,619,835 + -0.2 1,619,835 + -0.1 1,619,835 + +0.8 1,619,835 + -1.2 1,619,835 + -0.1 1,619,835 + -1.1 1,619,836 - -0.4 1,619,836 - -0.3 1,619,836 - +0.3 1,619,866 + +1.0 1,619,867 - Psest_1520 0.10 +1.4 1,619,908 - Psest_1520 0.23 +0.6 1,619,953 + Psest_1520 0.38 +0.8 1,619,953 + Psest_1520 0.38 -1.2 1,620,025 + Psest_1520 0.61 +0.7 1,620,025 + Psest_1520 0.61 -0.9 1,620,025 + Psest_1520 0.61 -1.3 1,620,026 - Psest_1520 0.61 -0.3 1,620,070 + Psest_1520 0.76 +1.4 1,620,142 + -0.0 1,620,142 + -3.0 1,620,142 + +1.6 1,620,142 + +0.9 1,620,143 - +0.1 1,620,143 - -0.8 1,620,378 - Psest_1521 0.51 -0.5 1,620,535 + -0.5 1,620,536 - +1.1 1,620,536 - +0.1 1,620,612 + Psest_1522 0.30 -0.2 1,620,612 + Psest_1522 0.30 -0.5 1,620,612 + Psest_1522 0.30 +1.0 1,620,612 + Psest_1522 0.30 -1.8 1,620,689 - Psest_1522 0.70 +2.1 1,620,837 + -2.0 1,620,838 - +2.5 1,620,939 + +0.0 1,620,970 + +0.2 1,621,448 + Psest_1523 0.26 +2.0 1,621,522 + Psest_1523 0.29 +2.2 1,621,523 - Psest_1523 0.29 -0.2 1,621,523 - Psest_1523 0.29 -0.5 1,621,523 - Psest_1523 0.29 -1.8 1,621,523 - Psest_1523 0.29 -3.2 1,621,710 + Psest_1523 0.36 -1.0 1,621,710 + Psest_1523 0.36 -0.3 1,621,710 + Psest_1523 0.36 -0.7 1,621,710 + Psest_1523 0.36 -0.1 1,621,710 + Psest_1523 0.36 +0.7 1,621,711 - Psest_1523 0.36 +0.6 1,621,711 - Psest_1523 0.36 +0.4 1,621,711 - Psest_1523 0.36 +0.4 1,621,711 - Psest_1523 0.36 -1.0 1,621,711 - Psest_1523 0.36 +0.4 1,621,716 + Psest_1523 0.36 +1.1 1,621,716 + Psest_1523 0.36 +0.2 1,621,717 - Psest_1523 0.36 -0.3 1,621,717 - Psest_1523 0.36 +0.2 1,621,717 - Psest_1523 0.36 -0.5
Or see this region's nucleotide sequence