Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1361 and Psest_1362 overlap by 8 nucleotides Psest_1362 and Psest_1363 are separated by 7 nucleotides Psest_1363 and Psest_1364 are separated by 281 nucleotides Psest_1364 and Psest_1365 are separated by 144 nucleotides
Psest_1361: Psest_1361 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 1,471,150 to 1,471,911
_1361
Psest_1362: Psest_1362 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 1,471,904 to 1,472,548
_1362
Psest_1363: Psest_1363 - Predicted membrane protein, at 1,472,556 to 1,473,821
_1363
Psest_1364: Psest_1364 - hypothetical protein, at 1,474,103 to 1,474,504
_1364
Psest_1365: Psest_1365 - Methyl-accepting chemotaxis protein, at 1,474,649 to 1,476,628
_1365
Position (kb)
1472
1473
1474 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1471.764 kb on + strand, within Psest_1361 at 1471.764 kb on + strand, within Psest_1361 at 1471.764 kb on + strand, within Psest_1361 at 1471.804 kb on + strand, within Psest_1361 at 1472.635 kb on + strand at 1472.635 kb on + strand at 1472.635 kb on + strand at 1472.636 kb on - strand at 1472.636 kb on - strand at 1472.636 kb on - strand at 1472.636 kb on - strand at 1472.716 kb on + strand, within Psest_1363 at 1472.716 kb on + strand, within Psest_1363 at 1472.716 kb on + strand, within Psest_1363 at 1472.716 kb on + strand, within Psest_1363 at 1472.716 kb on + strand, within Psest_1363 at 1472.717 kb on - strand, within Psest_1363 at 1472.717 kb on - strand, within Psest_1363 at 1472.717 kb on - strand, within Psest_1363 at 1473.016 kb on + strand, within Psest_1363 at 1473.016 kb on + strand, within Psest_1363 at 1473.016 kb on + strand, within Psest_1363 at 1473.016 kb on + strand, within Psest_1363 at 1473.016 kb on + strand, within Psest_1363 at 1473.017 kb on - strand, within Psest_1363 at 1473.017 kb on - strand, within Psest_1363 at 1473.688 kb on + strand, within Psest_1363 at 1473.688 kb on + strand, within Psest_1363 at 1473.688 kb on + strand, within Psest_1363 at 1473.689 kb on - strand, within Psest_1363 at 1473.689 kb on - strand, within Psest_1363 at 1473.689 kb on - strand, within Psest_1363 at 1473.733 kb on + strand at 1473.733 kb on + strand at 1473.733 kb on + strand at 1473.733 kb on + strand at 1473.733 kb on + strand at 1473.733 kb on + strand at 1473.733 kb on + strand at 1473.733 kb on + strand at 1473.733 kb on + strand at 1473.733 kb on + strand at 1473.733 kb on + strand at 1473.734 kb on - strand at 1473.868 kb on - strand at 1473.868 kb on - strand at 1473.884 kb on + strand at 1474.141 kb on - strand at 1474.176 kb on + strand, within Psest_1364 at 1474.176 kb on + strand, within Psest_1364 at 1474.176 kb on + strand, within Psest_1364 at 1474.176 kb on + strand, within Psest_1364 at 1474.176 kb on + strand, within Psest_1364 at 1474.177 kb on - strand, within Psest_1364 at 1474.177 kb on - strand, within Psest_1364 at 1474.177 kb on - strand, within Psest_1364 at 1474.177 kb on - strand, within Psest_1364 at 1474.177 kb on - strand, within Psest_1364 at 1474.187 kb on + strand, within Psest_1364 at 1474.187 kb on + strand, within Psest_1364 at 1474.187 kb on + strand, within Psest_1364 at 1474.188 kb on - strand, within Psest_1364 at 1474.188 kb on - strand, within Psest_1364 at 1474.188 kb on - strand, within Psest_1364 at 1474.242 kb on + strand, within Psest_1364 at 1474.243 kb on - strand, within Psest_1364 at 1474.317 kb on + strand, within Psest_1364 at 1474.317 kb on + strand, within Psest_1364 at 1474.317 kb on + strand, within Psest_1364 at 1474.420 kb on - strand, within Psest_1364 at 1474.420 kb on - strand, within Psest_1364 at 1474.576 kb on + strand at 1474.646 kb on - strand at 1474.646 kb on - strand at 1474.646 kb on - strand at 1474.646 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 1,471,764 + Psest_1361 0.81 -1.7 1,471,764 + Psest_1361 0.81 +0.4 1,471,764 + Psest_1361 0.81 -0.9 1,471,804 + Psest_1361 0.86 -1.4 1,472,635 + +0.2 1,472,635 + +1.7 1,472,635 + +0.1 1,472,636 - -0.2 1,472,636 - -0.2 1,472,636 - +1.9 1,472,636 - -1.7 1,472,716 + Psest_1363 0.13 +1.9 1,472,716 + Psest_1363 0.13 -0.0 1,472,716 + Psest_1363 0.13 -1.7 1,472,716 + Psest_1363 0.13 +2.6 1,472,716 + Psest_1363 0.13 +0.1 1,472,717 - Psest_1363 0.13 +0.2 1,472,717 - Psest_1363 0.13 -0.9 1,472,717 - Psest_1363 0.13 -2.8 1,473,016 + Psest_1363 0.36 -0.9 1,473,016 + Psest_1363 0.36 +1.6 1,473,016 + Psest_1363 0.36 +1.0 1,473,016 + Psest_1363 0.36 +0.8 1,473,016 + Psest_1363 0.36 +1.5 1,473,017 - Psest_1363 0.36 +1.0 1,473,017 - Psest_1363 0.36 +0.5 1,473,688 + Psest_1363 0.89 +1.4 1,473,688 + Psest_1363 0.89 +0.0 1,473,688 + Psest_1363 0.89 +0.1 1,473,689 - Psest_1363 0.89 -0.2 1,473,689 - Psest_1363 0.89 +0.5 1,473,689 - Psest_1363 0.89 +0.9 1,473,733 + -0.0 1,473,733 + +0.1 1,473,733 + +0.2 1,473,733 + -0.5 1,473,733 + +1.7 1,473,733 + +0.1 1,473,733 + +1.2 1,473,733 + +0.7 1,473,733 + -0.0 1,473,733 + +0.4 1,473,733 + -1.9 1,473,734 - -0.8 1,473,868 - +1.0 1,473,868 - +0.1 1,473,884 + +0.0 1,474,141 - +1.7 1,474,176 + Psest_1364 0.18 -0.6 1,474,176 + Psest_1364 0.18 -1.5 1,474,176 + Psest_1364 0.18 +0.8 1,474,176 + Psest_1364 0.18 +0.7 1,474,176 + Psest_1364 0.18 -2.0 1,474,177 - Psest_1364 0.18 -0.8 1,474,177 - Psest_1364 0.18 -0.3 1,474,177 - Psest_1364 0.18 +3.3 1,474,177 - Psest_1364 0.18 +1.6 1,474,177 - Psest_1364 0.18 -0.6 1,474,187 + Psest_1364 0.21 +0.6 1,474,187 + Psest_1364 0.21 -1.0 1,474,187 + Psest_1364 0.21 -0.3 1,474,188 - Psest_1364 0.21 -0.8 1,474,188 - Psest_1364 0.21 +1.5 1,474,188 - Psest_1364 0.21 +1.4 1,474,242 + Psest_1364 0.35 -0.5 1,474,243 - Psest_1364 0.35 -1.9 1,474,317 + Psest_1364 0.53 -0.4 1,474,317 + Psest_1364 0.53 -0.6 1,474,317 + Psest_1364 0.53 +0.4 1,474,420 - Psest_1364 0.79 -0.2 1,474,420 - Psest_1364 0.79 +0.6 1,474,576 + +2.1 1,474,646 - +0.4 1,474,646 - -0.2 1,474,646 - +0.7 1,474,646 - +1.5
Or see this region's nucleotide sequence