Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1363

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1361 and Psest_1362 overlap by 8 nucleotidesPsest_1362 and Psest_1363 are separated by 7 nucleotidesPsest_1363 and Psest_1364 are separated by 281 nucleotidesPsest_1364 and Psest_1365 are separated by 144 nucleotides Psest_1361: Psest_1361 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 1,471,150 to 1,471,911 _1361 Psest_1362: Psest_1362 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 1,471,904 to 1,472,548 _1362 Psest_1363: Psest_1363 - Predicted membrane protein, at 1,472,556 to 1,473,821 _1363 Psest_1364: Psest_1364 - hypothetical protein, at 1,474,103 to 1,474,504 _1364 Psest_1365: Psest_1365 - Methyl-accepting chemotaxis protein, at 1,474,649 to 1,476,628 _1365 Position (kb) 1472 1473 1474Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1471.764 kb on + strand, within Psest_1361at 1471.764 kb on + strand, within Psest_1361at 1471.764 kb on + strand, within Psest_1361at 1471.804 kb on + strand, within Psest_1361at 1472.635 kb on + strandat 1472.635 kb on + strandat 1472.635 kb on + strandat 1472.636 kb on - strandat 1472.636 kb on - strandat 1472.636 kb on - strandat 1472.636 kb on - strandat 1472.716 kb on + strand, within Psest_1363at 1472.716 kb on + strand, within Psest_1363at 1472.716 kb on + strand, within Psest_1363at 1472.716 kb on + strand, within Psest_1363at 1472.716 kb on + strand, within Psest_1363at 1472.717 kb on - strand, within Psest_1363at 1472.717 kb on - strand, within Psest_1363at 1472.717 kb on - strand, within Psest_1363at 1473.016 kb on + strand, within Psest_1363at 1473.016 kb on + strand, within Psest_1363at 1473.016 kb on + strand, within Psest_1363at 1473.016 kb on + strand, within Psest_1363at 1473.016 kb on + strand, within Psest_1363at 1473.017 kb on - strand, within Psest_1363at 1473.017 kb on - strand, within Psest_1363at 1473.688 kb on + strand, within Psest_1363at 1473.688 kb on + strand, within Psest_1363at 1473.688 kb on + strand, within Psest_1363at 1473.689 kb on - strand, within Psest_1363at 1473.689 kb on - strand, within Psest_1363at 1473.689 kb on - strand, within Psest_1363at 1473.733 kb on + strandat 1473.733 kb on + strandat 1473.733 kb on + strandat 1473.733 kb on + strandat 1473.733 kb on + strandat 1473.733 kb on + strandat 1473.733 kb on + strandat 1473.733 kb on + strandat 1473.733 kb on + strandat 1473.733 kb on + strandat 1473.733 kb on + strandat 1473.734 kb on - strandat 1473.868 kb on - strandat 1473.868 kb on - strandat 1473.884 kb on + strandat 1474.141 kb on - strandat 1474.176 kb on + strand, within Psest_1364at 1474.176 kb on + strand, within Psest_1364at 1474.176 kb on + strand, within Psest_1364at 1474.176 kb on + strand, within Psest_1364at 1474.176 kb on + strand, within Psest_1364at 1474.177 kb on - strand, within Psest_1364at 1474.177 kb on - strand, within Psest_1364at 1474.177 kb on - strand, within Psest_1364at 1474.177 kb on - strand, within Psest_1364at 1474.177 kb on - strand, within Psest_1364at 1474.187 kb on + strand, within Psest_1364at 1474.187 kb on + strand, within Psest_1364at 1474.187 kb on + strand, within Psest_1364at 1474.188 kb on - strand, within Psest_1364at 1474.188 kb on - strand, within Psest_1364at 1474.188 kb on - strand, within Psest_1364at 1474.242 kb on + strand, within Psest_1364at 1474.243 kb on - strand, within Psest_1364at 1474.317 kb on + strand, within Psest_1364at 1474.317 kb on + strand, within Psest_1364at 1474.317 kb on + strand, within Psest_1364at 1474.420 kb on - strand, within Psest_1364at 1474.420 kb on - strand, within Psest_1364at 1474.576 kb on + strandat 1474.646 kb on - strandat 1474.646 kb on - strandat 1474.646 kb on - strandat 1474.646 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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1,471,764 + Psest_1361 0.81 -1.7
1,471,764 + Psest_1361 0.81 +0.4
1,471,764 + Psest_1361 0.81 -0.9
1,471,804 + Psest_1361 0.86 -1.4
1,472,635 + +0.2
1,472,635 + +1.7
1,472,635 + +0.1
1,472,636 - -0.2
1,472,636 - -0.2
1,472,636 - +1.9
1,472,636 - -1.7
1,472,716 + Psest_1363 0.13 +1.9
1,472,716 + Psest_1363 0.13 -0.0
1,472,716 + Psest_1363 0.13 -1.7
1,472,716 + Psest_1363 0.13 +2.6
1,472,716 + Psest_1363 0.13 +0.1
1,472,717 - Psest_1363 0.13 +0.2
1,472,717 - Psest_1363 0.13 -0.9
1,472,717 - Psest_1363 0.13 -2.8
1,473,016 + Psest_1363 0.36 -0.9
1,473,016 + Psest_1363 0.36 +1.6
1,473,016 + Psest_1363 0.36 +1.0
1,473,016 + Psest_1363 0.36 +0.8
1,473,016 + Psest_1363 0.36 +1.5
1,473,017 - Psest_1363 0.36 +1.0
1,473,017 - Psest_1363 0.36 +0.5
1,473,688 + Psest_1363 0.89 +1.4
1,473,688 + Psest_1363 0.89 +0.0
1,473,688 + Psest_1363 0.89 +0.1
1,473,689 - Psest_1363 0.89 -0.2
1,473,689 - Psest_1363 0.89 +0.5
1,473,689 - Psest_1363 0.89 +0.9
1,473,733 + -0.0
1,473,733 + +0.1
1,473,733 + +0.2
1,473,733 + -0.5
1,473,733 + +1.7
1,473,733 + +0.1
1,473,733 + +1.2
1,473,733 + +0.7
1,473,733 + -0.0
1,473,733 + +0.4
1,473,733 + -1.9
1,473,734 - -0.8
1,473,868 - +1.0
1,473,868 - +0.1
1,473,884 + +0.0
1,474,141 - +1.7
1,474,176 + Psest_1364 0.18 -0.6
1,474,176 + Psest_1364 0.18 -1.5
1,474,176 + Psest_1364 0.18 +0.8
1,474,176 + Psest_1364 0.18 +0.7
1,474,176 + Psest_1364 0.18 -2.0
1,474,177 - Psest_1364 0.18 -0.8
1,474,177 - Psest_1364 0.18 -0.3
1,474,177 - Psest_1364 0.18 +3.3
1,474,177 - Psest_1364 0.18 +1.6
1,474,177 - Psest_1364 0.18 -0.6
1,474,187 + Psest_1364 0.21 +0.6
1,474,187 + Psest_1364 0.21 -1.0
1,474,187 + Psest_1364 0.21 -0.3
1,474,188 - Psest_1364 0.21 -0.8
1,474,188 - Psest_1364 0.21 +1.5
1,474,188 - Psest_1364 0.21 +1.4
1,474,242 + Psest_1364 0.35 -0.5
1,474,243 - Psest_1364 0.35 -1.9
1,474,317 + Psest_1364 0.53 -0.4
1,474,317 + Psest_1364 0.53 -0.6
1,474,317 + Psest_1364 0.53 +0.4
1,474,420 - Psest_1364 0.79 -0.2
1,474,420 - Psest_1364 0.79 +0.6
1,474,576 + +2.1
1,474,646 - +0.4
1,474,646 - -0.2
1,474,646 - +0.7
1,474,646 - +1.5

Or see this region's nucleotide sequence