Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1124 and Psest_1125 are separated by 173 nucleotides Psest_1125 and Psest_1126 are separated by 117 nucleotides Psest_1126 and Psest_1127 are separated by 98 nucleotides Psest_1127 and Psest_1128 are separated by 120 nucleotides Psest_1128 and Psest_1129 are separated by 272 nucleotides
Psest_1124: Psest_1124 - ATP-dependent transcriptional regulator, at 1,219,196 to 1,221,817
_1124
Psest_1125: Psest_1125 - Protein of unknown function (DUF3509)., at 1,221,991 to 1,222,257
_1125
Psest_1126: Psest_1126 - Uncharacterized protein conserved in bacteria, at 1,222,375 to 1,222,629
_1126
Psest_1127: Psest_1127 - hypothetical protein, at 1,222,728 to 1,223,192
_1127
Psest_1128: Psest_1128 - Uncharacterized protein conserved in bacteria, at 1,223,313 to 1,223,768
_1128
Psest_1129: Psest_1129 - preprotein translocase, SecA subunit, at 1,224,041 to 1,226,797
_1129
Position (kb)
1222
1223
1224 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1221.754 kb on + strand at 1221.755 kb on - strand at 1221.755 kb on - strand at 1221.862 kb on - strand at 1221.992 kb on + strand at 1221.992 kb on + strand at 1221.992 kb on + strand at 1222.125 kb on + strand, within Psest_1125 at 1222.126 kb on - strand, within Psest_1125 at 1222.127 kb on + strand, within Psest_1125 at 1222.127 kb on + strand, within Psest_1125 at 1222.128 kb on - strand, within Psest_1125 at 1222.128 kb on - strand, within Psest_1125 at 1222.211 kb on + strand, within Psest_1125 at 1222.211 kb on + strand, within Psest_1125 at 1222.212 kb on - strand, within Psest_1125 at 1222.265 kb on + strand at 1222.365 kb on + strand at 1222.366 kb on - strand at 1222.366 kb on - strand at 1222.455 kb on + strand, within Psest_1126 at 1222.457 kb on + strand, within Psest_1126 at 1222.457 kb on + strand, within Psest_1126 at 1222.457 kb on + strand, within Psest_1126 at 1222.457 kb on + strand, within Psest_1126 at 1222.457 kb on + strand, within Psest_1126 at 1222.457 kb on + strand, within Psest_1126 at 1222.457 kb on + strand, within Psest_1126 at 1222.457 kb on + strand, within Psest_1126 at 1222.457 kb on + strand, within Psest_1126 at 1222.457 kb on + strand, within Psest_1126 at 1222.458 kb on - strand, within Psest_1126 at 1222.458 kb on - strand, within Psest_1126 at 1222.458 kb on - strand, within Psest_1126 at 1222.458 kb on - strand, within Psest_1126 at 1222.458 kb on - strand, within Psest_1126 at 1222.458 kb on - strand, within Psest_1126 at 1222.458 kb on - strand, within Psest_1126 at 1222.458 kb on - strand, within Psest_1126 at 1222.458 kb on - strand, within Psest_1126 at 1222.458 kb on - strand, within Psest_1126 at 1222.458 kb on - strand, within Psest_1126 at 1222.458 kb on - strand, within Psest_1126 at 1222.610 kb on + strand at 1222.631 kb on + strand at 1222.631 kb on + strand at 1222.631 kb on + strand at 1222.631 kb on + strand at 1222.631 kb on + strand at 1222.632 kb on - strand at 1222.632 kb on - strand at 1222.632 kb on - strand at 1222.678 kb on - strand at 1222.700 kb on + strand at 1222.714 kb on - strand at 1222.714 kb on - strand at 1222.861 kb on + strand, within Psest_1127 at 1222.861 kb on + strand, within Psest_1127 at 1222.861 kb on + strand, within Psest_1127 at 1222.862 kb on - strand, within Psest_1127 at 1222.862 kb on - strand, within Psest_1127 at 1222.862 kb on - strand, within Psest_1127 at 1222.862 kb on - strand, within Psest_1127 at 1222.877 kb on - strand, within Psest_1127 at 1222.895 kb on + strand, within Psest_1127 at 1222.895 kb on + strand, within Psest_1127 at 1222.895 kb on + strand, within Psest_1127 at 1222.895 kb on + strand, within Psest_1127 at 1222.896 kb on - strand, within Psest_1127 at 1222.896 kb on - strand, within Psest_1127 at 1222.915 kb on + strand, within Psest_1127 at 1223.019 kb on + strand, within Psest_1127 at 1223.020 kb on - strand, within Psest_1127 at 1223.020 kb on - strand, within Psest_1127 at 1223.043 kb on + strand, within Psest_1127 at 1223.155 kb on - strand at 1223.155 kb on - strand at 1223.303 kb on + strand at 1223.304 kb on - strand at 1223.778 kb on + strand at 1223.778 kb on + strand at 1223.818 kb on - strand at 1223.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 1,221,754 + -0.3 1,221,755 - -0.1 1,221,755 - -2.3 1,221,862 - +0.3 1,221,992 + -0.5 1,221,992 + +0.6 1,221,992 + +1.3 1,222,125 + Psest_1125 0.50 -0.8 1,222,126 - Psest_1125 0.51 -0.1 1,222,127 + Psest_1125 0.51 +1.0 1,222,127 + Psest_1125 0.51 -0.3 1,222,128 - Psest_1125 0.51 +0.2 1,222,128 - Psest_1125 0.51 -0.9 1,222,211 + Psest_1125 0.82 -0.6 1,222,211 + Psest_1125 0.82 -0.6 1,222,212 - Psest_1125 0.83 -1.1 1,222,265 + +0.2 1,222,365 + +0.3 1,222,366 - -0.7 1,222,366 - +1.4 1,222,455 + Psest_1126 0.31 +0.1 1,222,457 + Psest_1126 0.32 +0.2 1,222,457 + Psest_1126 0.32 -1.2 1,222,457 + Psest_1126 0.32 -0.5 1,222,457 + Psest_1126 0.32 -0.6 1,222,457 + Psest_1126 0.32 -2.5 1,222,457 + Psest_1126 0.32 +4.1 1,222,457 + Psest_1126 0.32 +0.4 1,222,457 + Psest_1126 0.32 -1.0 1,222,457 + Psest_1126 0.32 -0.3 1,222,457 + Psest_1126 0.32 +0.2 1,222,458 - Psest_1126 0.33 +0.0 1,222,458 - Psest_1126 0.33 -1.5 1,222,458 - Psest_1126 0.33 +0.9 1,222,458 - Psest_1126 0.33 +0.1 1,222,458 - Psest_1126 0.33 +0.4 1,222,458 - Psest_1126 0.33 +2.3 1,222,458 - Psest_1126 0.33 +1.2 1,222,458 - Psest_1126 0.33 -0.7 1,222,458 - Psest_1126 0.33 +0.4 1,222,458 - Psest_1126 0.33 +0.4 1,222,458 - Psest_1126 0.33 -0.6 1,222,458 - Psest_1126 0.33 +0.3 1,222,610 + +0.2 1,222,631 + +0.3 1,222,631 + -0.6 1,222,631 + +1.4 1,222,631 + -0.5 1,222,631 + +0.5 1,222,632 - -0.8 1,222,632 - +0.4 1,222,632 - +0.4 1,222,678 - -1.9 1,222,700 + +2.1 1,222,714 - -0.6 1,222,714 - +0.9 1,222,861 + Psest_1127 0.29 +1.3 1,222,861 + Psest_1127 0.29 +0.7 1,222,861 + Psest_1127 0.29 -0.9 1,222,862 - Psest_1127 0.29 +1.5 1,222,862 - Psest_1127 0.29 +1.2 1,222,862 - Psest_1127 0.29 +0.7 1,222,862 - Psest_1127 0.29 -2.0 1,222,877 - Psest_1127 0.32 -0.2 1,222,895 + Psest_1127 0.36 +0.2 1,222,895 + Psest_1127 0.36 +0.6 1,222,895 + Psest_1127 0.36 +1.3 1,222,895 + Psest_1127 0.36 -0.4 1,222,896 - Psest_1127 0.36 +0.3 1,222,896 - Psest_1127 0.36 +2.0 1,222,915 + Psest_1127 0.40 -0.3 1,223,019 + Psest_1127 0.63 +0.5 1,223,020 - Psest_1127 0.63 +3.3 1,223,020 - Psest_1127 0.63 -0.0 1,223,043 + Psest_1127 0.68 +1.6 1,223,155 - +0.7 1,223,155 - +0.5 1,223,303 + +1.8 1,223,304 - +0.6 1,223,778 + +1.1 1,223,778 + -0.3 1,223,818 - -1.6 1,223,818 - +0.4
Or see this region's nucleotide sequence