Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1127

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1124 and Psest_1125 are separated by 173 nucleotidesPsest_1125 and Psest_1126 are separated by 117 nucleotidesPsest_1126 and Psest_1127 are separated by 98 nucleotidesPsest_1127 and Psest_1128 are separated by 120 nucleotidesPsest_1128 and Psest_1129 are separated by 272 nucleotides Psest_1124: Psest_1124 - ATP-dependent transcriptional regulator, at 1,219,196 to 1,221,817 _1124 Psest_1125: Psest_1125 - Protein of unknown function (DUF3509)., at 1,221,991 to 1,222,257 _1125 Psest_1126: Psest_1126 - Uncharacterized protein conserved in bacteria, at 1,222,375 to 1,222,629 _1126 Psest_1127: Psest_1127 - hypothetical protein, at 1,222,728 to 1,223,192 _1127 Psest_1128: Psest_1128 - Uncharacterized protein conserved in bacteria, at 1,223,313 to 1,223,768 _1128 Psest_1129: Psest_1129 - preprotein translocase, SecA subunit, at 1,224,041 to 1,226,797 _1129 Position (kb) 1222 1223 1224Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1221.754 kb on + strandat 1221.755 kb on - strandat 1221.755 kb on - strandat 1221.862 kb on - strandat 1221.992 kb on + strandat 1221.992 kb on + strandat 1221.992 kb on + strandat 1222.125 kb on + strand, within Psest_1125at 1222.126 kb on - strand, within Psest_1125at 1222.127 kb on + strand, within Psest_1125at 1222.127 kb on + strand, within Psest_1125at 1222.128 kb on - strand, within Psest_1125at 1222.128 kb on - strand, within Psest_1125at 1222.211 kb on + strand, within Psest_1125at 1222.211 kb on + strand, within Psest_1125at 1222.212 kb on - strand, within Psest_1125at 1222.265 kb on + strandat 1222.365 kb on + strandat 1222.366 kb on - strandat 1222.366 kb on - strandat 1222.455 kb on + strand, within Psest_1126at 1222.457 kb on + strand, within Psest_1126at 1222.457 kb on + strand, within Psest_1126at 1222.457 kb on + strand, within Psest_1126at 1222.457 kb on + strand, within Psest_1126at 1222.457 kb on + strand, within Psest_1126at 1222.457 kb on + strand, within Psest_1126at 1222.457 kb on + strand, within Psest_1126at 1222.457 kb on + strand, within Psest_1126at 1222.457 kb on + strand, within Psest_1126at 1222.457 kb on + strand, within Psest_1126at 1222.458 kb on - strand, within Psest_1126at 1222.458 kb on - strand, within Psest_1126at 1222.458 kb on - strand, within Psest_1126at 1222.458 kb on - strand, within Psest_1126at 1222.458 kb on - strand, within Psest_1126at 1222.458 kb on - strand, within Psest_1126at 1222.458 kb on - strand, within Psest_1126at 1222.458 kb on - strand, within Psest_1126at 1222.458 kb on - strand, within Psest_1126at 1222.458 kb on - strand, within Psest_1126at 1222.458 kb on - strand, within Psest_1126at 1222.458 kb on - strand, within Psest_1126at 1222.610 kb on + strandat 1222.631 kb on + strandat 1222.631 kb on + strandat 1222.631 kb on + strandat 1222.631 kb on + strandat 1222.631 kb on + strandat 1222.632 kb on - strandat 1222.632 kb on - strandat 1222.632 kb on - strandat 1222.678 kb on - strandat 1222.700 kb on + strandat 1222.714 kb on - strandat 1222.714 kb on - strandat 1222.861 kb on + strand, within Psest_1127at 1222.861 kb on + strand, within Psest_1127at 1222.861 kb on + strand, within Psest_1127at 1222.862 kb on - strand, within Psest_1127at 1222.862 kb on - strand, within Psest_1127at 1222.862 kb on - strand, within Psest_1127at 1222.862 kb on - strand, within Psest_1127at 1222.877 kb on - strand, within Psest_1127at 1222.895 kb on + strand, within Psest_1127at 1222.895 kb on + strand, within Psest_1127at 1222.895 kb on + strand, within Psest_1127at 1222.895 kb on + strand, within Psest_1127at 1222.896 kb on - strand, within Psest_1127at 1222.896 kb on - strand, within Psest_1127at 1222.915 kb on + strand, within Psest_1127at 1223.019 kb on + strand, within Psest_1127at 1223.020 kb on - strand, within Psest_1127at 1223.020 kb on - strand, within Psest_1127at 1223.043 kb on + strand, within Psest_1127at 1223.155 kb on - strandat 1223.155 kb on - strandat 1223.303 kb on + strandat 1223.304 kb on - strandat 1223.778 kb on + strandat 1223.778 kb on + strandat 1223.818 kb on - strandat 1223.818 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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1,221,754 + -0.3
1,221,755 - -0.1
1,221,755 - -2.3
1,221,862 - +0.3
1,221,992 + -0.5
1,221,992 + +0.6
1,221,992 + +1.3
1,222,125 + Psest_1125 0.50 -0.8
1,222,126 - Psest_1125 0.51 -0.1
1,222,127 + Psest_1125 0.51 +1.0
1,222,127 + Psest_1125 0.51 -0.3
1,222,128 - Psest_1125 0.51 +0.2
1,222,128 - Psest_1125 0.51 -0.9
1,222,211 + Psest_1125 0.82 -0.6
1,222,211 + Psest_1125 0.82 -0.6
1,222,212 - Psest_1125 0.83 -1.1
1,222,265 + +0.2
1,222,365 + +0.3
1,222,366 - -0.7
1,222,366 - +1.4
1,222,455 + Psest_1126 0.31 +0.1
1,222,457 + Psest_1126 0.32 +0.2
1,222,457 + Psest_1126 0.32 -1.2
1,222,457 + Psest_1126 0.32 -0.5
1,222,457 + Psest_1126 0.32 -0.6
1,222,457 + Psest_1126 0.32 -2.5
1,222,457 + Psest_1126 0.32 +4.1
1,222,457 + Psest_1126 0.32 +0.4
1,222,457 + Psest_1126 0.32 -1.0
1,222,457 + Psest_1126 0.32 -0.3
1,222,457 + Psest_1126 0.32 +0.2
1,222,458 - Psest_1126 0.33 +0.0
1,222,458 - Psest_1126 0.33 -1.5
1,222,458 - Psest_1126 0.33 +0.9
1,222,458 - Psest_1126 0.33 +0.1
1,222,458 - Psest_1126 0.33 +0.4
1,222,458 - Psest_1126 0.33 +2.3
1,222,458 - Psest_1126 0.33 +1.2
1,222,458 - Psest_1126 0.33 -0.7
1,222,458 - Psest_1126 0.33 +0.4
1,222,458 - Psest_1126 0.33 +0.4
1,222,458 - Psest_1126 0.33 -0.6
1,222,458 - Psest_1126 0.33 +0.3
1,222,610 + +0.2
1,222,631 + +0.3
1,222,631 + -0.6
1,222,631 + +1.4
1,222,631 + -0.5
1,222,631 + +0.5
1,222,632 - -0.8
1,222,632 - +0.4
1,222,632 - +0.4
1,222,678 - -1.9
1,222,700 + +2.1
1,222,714 - -0.6
1,222,714 - +0.9
1,222,861 + Psest_1127 0.29 +1.3
1,222,861 + Psest_1127 0.29 +0.7
1,222,861 + Psest_1127 0.29 -0.9
1,222,862 - Psest_1127 0.29 +1.5
1,222,862 - Psest_1127 0.29 +1.2
1,222,862 - Psest_1127 0.29 +0.7
1,222,862 - Psest_1127 0.29 -2.0
1,222,877 - Psest_1127 0.32 -0.2
1,222,895 + Psest_1127 0.36 +0.2
1,222,895 + Psest_1127 0.36 +0.6
1,222,895 + Psest_1127 0.36 +1.3
1,222,895 + Psest_1127 0.36 -0.4
1,222,896 - Psest_1127 0.36 +0.3
1,222,896 - Psest_1127 0.36 +2.0
1,222,915 + Psest_1127 0.40 -0.3
1,223,019 + Psest_1127 0.63 +0.5
1,223,020 - Psest_1127 0.63 +3.3
1,223,020 - Psest_1127 0.63 -0.0
1,223,043 + Psest_1127 0.68 +1.6
1,223,155 - +0.7
1,223,155 - +0.5
1,223,303 + +1.8
1,223,304 - +0.6
1,223,778 + +1.1
1,223,778 + -0.3
1,223,818 - -1.6
1,223,818 - +0.4

Or see this region's nucleotide sequence