Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3765

Experiment: perchlorate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3764 and Psest_3765 are separated by 10 nucleotidesPsest_3765 and Psest_3766 overlap by 4 nucleotidesPsest_3766 and Psest_3767 are separated by 66 nucleotides Psest_3764: Psest_3764 - diaminopimelate decarboxylase, at 3,931,923 to 3,933,170 _3764 Psest_3765: Psest_3765 - diaminopimelate epimerase, at 3,933,181 to 3,934,011 _3765 Psest_3766: Psest_3766 - Uncharacterized protein conserved in bacteria, at 3,934,008 to 3,934,700 _3766 Psest_3767: Psest_3767 - tyrosine recombinase XerC, at 3,934,767 to 3,935,666 _3767 Position (kb) 3933 3934 3935Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3934.194 kb on - strand, within Psest_3766at 3934.360 kb on - strand, within Psest_3766at 3934.477 kb on + strand, within Psest_3766at 3934.602 kb on + strand, within Psest_3766at 3934.602 kb on + strand, within Psest_3766at 3934.603 kb on - strand, within Psest_3766at 3934.635 kb on + strandat 3934.636 kb on - strandat 3934.788 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 25 mM
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3,934,194 - Psest_3766 0.27 +1.4
3,934,360 - Psest_3766 0.51 -1.5
3,934,477 + Psest_3766 0.68 -2.2
3,934,602 + Psest_3766 0.86 +2.2
3,934,602 + Psest_3766 0.86 +0.2
3,934,603 - Psest_3766 0.86 -2.4
3,934,635 + +0.9
3,934,636 - +3.2
3,934,788 + -1.2

Or see this region's nucleotide sequence