Experiment: perchlorate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3761 and Psest_3762 are separated by 160 nucleotides Psest_3762 and Psest_3763 are separated by 188 nucleotides Psest_3763 and Psest_3764 are separated by 12 nucleotides Psest_3764 and Psest_3765 are separated by 10 nucleotides Psest_3765 and Psest_3766 overlap by 4 nucleotides
Psest_3761: Psest_3761 - Transcription elongation factor, at 3,930,684 to 3,931,088
_3761
Psest_3762: Psest_3762 - iron donor protein CyaY, at 3,931,249 to 3,931,581
_3762
Psest_3763: Psest_3763 - hypothetical protein, at 3,931,770 to 3,931,910
_3763
Psest_3764: Psest_3764 - diaminopimelate decarboxylase, at 3,931,923 to 3,933,170
_3764
Psest_3765: Psest_3765 - diaminopimelate epimerase, at 3,933,181 to 3,934,011
_3765
Psest_3766: Psest_3766 - Uncharacterized protein conserved in bacteria, at 3,934,008 to 3,934,700
_3766
Position (kb)
3931
3932
3933
3934 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3931.178 kb on + strand at 3931.179 kb on - strand at 3931.179 kb on - strand at 3931.195 kb on + strand at 3931.250 kb on + strand at 3931.250 kb on + strand at 3931.250 kb on + strand at 3931.516 kb on + strand, within Psest_3762 at 3931.516 kb on + strand, within Psest_3762 at 3931.516 kb on + strand, within Psest_3762 at 3931.516 kb on + strand, within Psest_3762 at 3931.516 kb on + strand, within Psest_3762 at 3931.517 kb on - strand, within Psest_3762 at 3931.517 kb on - strand, within Psest_3762 at 3931.517 kb on - strand, within Psest_3762 at 3931.517 kb on - strand, within Psest_3762 at 3931.517 kb on - strand, within Psest_3762 at 3931.517 kb on - strand, within Psest_3762 at 3931.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 25 mM remove 3,931,178 + +1.9 3,931,179 - -0.7 3,931,179 - -0.2 3,931,195 + +1.3 3,931,250 + +2.2 3,931,250 + -0.3 3,931,250 + +0.9 3,931,516 + Psest_3762 0.80 -0.0 3,931,516 + Psest_3762 0.80 +0.2 3,931,516 + Psest_3762 0.80 -1.7 3,931,516 + Psest_3762 0.80 -0.0 3,931,516 + Psest_3762 0.80 +2.1 3,931,517 - Psest_3762 0.80 +1.4 3,931,517 - Psest_3762 0.80 -0.9 3,931,517 - Psest_3762 0.80 +3.0 3,931,517 - Psest_3762 0.80 -0.6 3,931,517 - Psest_3762 0.80 -1.8 3,931,517 - Psest_3762 0.80 +0.9 3,931,708 - +1.6
Or see this region's nucleotide sequence