Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3069

Experiment: perchlorate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3068 and Psest_3069 are separated by 382 nucleotidesPsest_3069 and Psest_3070 are separated by 211 nucleotides Psest_3068: Psest_3068 - hypothetical protein, at 3,243,828 to 3,244,793 _3068 Psest_3069: Psest_3069 - 3-oxoadipate enol-lactonase, at 3,245,176 to 3,245,964 _3069 Psest_3070: Psest_3070 - 3-oxoadipyl-CoA thiolase, at 3,246,176 to 3,247,381 _3070 Position (kb) 3245 3246Strain fitness (log2 ratio) -2 -1 0 1 2at 3244.311 kb on - strand, within Psest_3068at 3244.502 kb on + strand, within Psest_3068at 3244.502 kb on + strand, within Psest_3068at 3244.502 kb on + strand, within Psest_3068at 3244.607 kb on - strand, within Psest_3068at 3244.607 kb on - strand, within Psest_3068at 3244.647 kb on - strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.681 kb on + strand, within Psest_3068at 3244.682 kb on - strand, within Psest_3068at 3244.771 kb on - strandat 3244.771 kb on - strandat 3244.772 kb on + strandat 3244.772 kb on + strandat 3244.772 kb on + strandat 3244.772 kb on + strandat 3244.772 kb on + strandat 3244.772 kb on + strandat 3244.773 kb on - strandat 3244.773 kb on - strandat 3244.773 kb on - strandat 3244.856 kb on + strandat 3244.856 kb on + strandat 3244.902 kb on + strandat 3244.903 kb on - strandat 3244.903 kb on - strandat 3245.005 kb on - strandat 3245.035 kb on + strandat 3245.035 kb on + strandat 3245.089 kb on - strandat 3245.174 kb on - strandat 3245.208 kb on + strandat 3245.208 kb on + strandat 3245.209 kb on - strandat 3245.209 kb on - strandat 3245.237 kb on - strandat 3245.578 kb on + strand, within Psest_3069at 3245.630 kb on - strand, within Psest_3069at 3245.630 kb on - strand, within Psest_3069at 3245.630 kb on - strand, within Psest_3069at 3245.762 kb on + strand, within Psest_3069at 3245.953 kb on + strandat 3245.953 kb on + strandat 3245.953 kb on + strandat 3245.984 kb on + strandat 3245.985 kb on - strandat 3246.056 kb on - strandat 3246.561 kb on + strand, within Psest_3070at 3246.931 kb on + strand, within Psest_3070at 3246.932 kb on - strand, within Psest_3070

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 25 mM
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3,244,311 - Psest_3068 0.50 +1.7
3,244,502 + Psest_3068 0.70 -0.9
3,244,502 + Psest_3068 0.70 -0.1
3,244,502 + Psest_3068 0.70 +1.3
3,244,607 - Psest_3068 0.81 -0.2
3,244,607 - Psest_3068 0.81 -0.4
3,244,647 - Psest_3068 0.85 -0.9
3,244,681 + Psest_3068 0.88 +0.5
3,244,681 + Psest_3068 0.88 +1.2
3,244,681 + Psest_3068 0.88 -1.1
3,244,681 + Psest_3068 0.88 +0.5
3,244,681 + Psest_3068 0.88 +0.2
3,244,681 + Psest_3068 0.88 -0.5
3,244,681 + Psest_3068 0.88 -1.8
3,244,681 + Psest_3068 0.88 +0.0
3,244,681 + Psest_3068 0.88 -0.4
3,244,681 + Psest_3068 0.88 -0.4
3,244,681 + Psest_3068 0.88 -1.2
3,244,681 + Psest_3068 0.88 -0.2
3,244,681 + Psest_3068 0.88 +1.3
3,244,681 + Psest_3068 0.88 +1.1
3,244,682 - Psest_3068 0.88 -0.7
3,244,771 - +0.6
3,244,771 - +0.3
3,244,772 + -1.6
3,244,772 + -1.6
3,244,772 + +1.7
3,244,772 + +0.4
3,244,772 + -0.5
3,244,772 + +1.9
3,244,773 - -0.8
3,244,773 - -2.1
3,244,773 - +0.6
3,244,856 + +0.6
3,244,856 + -0.4
3,244,902 + +0.2
3,244,903 - -0.4
3,244,903 - +0.9
3,245,005 - -0.2
3,245,035 + -0.5
3,245,035 + +0.8
3,245,089 - -0.7
3,245,174 - +1.2
3,245,208 + -0.1
3,245,208 + +0.2
3,245,209 - +0.4
3,245,209 - +0.1
3,245,237 - +0.6
3,245,578 + Psest_3069 0.51 -0.2
3,245,630 - Psest_3069 0.58 +1.2
3,245,630 - Psest_3069 0.58 +1.9
3,245,630 - Psest_3069 0.58 -2.4
3,245,762 + Psest_3069 0.74 +0.7
3,245,953 + +2.3
3,245,953 + +0.8
3,245,953 + +1.3
3,245,984 + -0.1
3,245,985 - +0.4
3,246,056 - +1.8
3,246,561 + Psest_3070 0.32 +0.3
3,246,931 + Psest_3070 0.63 -0.6
3,246,932 - Psest_3070 0.63 +1.6

Or see this region's nucleotide sequence