Experiment: perchlorate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3068 and Psest_3069 are separated by 382 nucleotides Psest_3069 and Psest_3070 are separated by 211 nucleotides
Psest_3068: Psest_3068 - hypothetical protein, at 3,243,828 to 3,244,793
_3068
Psest_3069: Psest_3069 - 3-oxoadipate enol-lactonase, at 3,245,176 to 3,245,964
_3069
Psest_3070: Psest_3070 - 3-oxoadipyl-CoA thiolase, at 3,246,176 to 3,247,381
_3070
Position (kb)
3245
3246 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3244.311 kb on - strand, within Psest_3068 at 3244.502 kb on + strand, within Psest_3068 at 3244.502 kb on + strand, within Psest_3068 at 3244.502 kb on + strand, within Psest_3068 at 3244.607 kb on - strand, within Psest_3068 at 3244.607 kb on - strand, within Psest_3068 at 3244.647 kb on - strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.681 kb on + strand, within Psest_3068 at 3244.682 kb on - strand, within Psest_3068 at 3244.771 kb on - strand at 3244.771 kb on - strand at 3244.772 kb on + strand at 3244.772 kb on + strand at 3244.772 kb on + strand at 3244.772 kb on + strand at 3244.772 kb on + strand at 3244.772 kb on + strand at 3244.773 kb on - strand at 3244.773 kb on - strand at 3244.773 kb on - strand at 3244.856 kb on + strand at 3244.856 kb on + strand at 3244.902 kb on + strand at 3244.903 kb on - strand at 3244.903 kb on - strand at 3245.005 kb on - strand at 3245.035 kb on + strand at 3245.035 kb on + strand at 3245.089 kb on - strand at 3245.174 kb on - strand at 3245.208 kb on + strand at 3245.208 kb on + strand at 3245.209 kb on - strand at 3245.209 kb on - strand at 3245.237 kb on - strand at 3245.578 kb on + strand, within Psest_3069 at 3245.630 kb on - strand, within Psest_3069 at 3245.630 kb on - strand, within Psest_3069 at 3245.630 kb on - strand, within Psest_3069 at 3245.762 kb on + strand, within Psest_3069 at 3245.953 kb on + strand at 3245.953 kb on + strand at 3245.953 kb on + strand at 3245.984 kb on + strand at 3245.985 kb on - strand at 3246.056 kb on - strand at 3246.561 kb on + strand, within Psest_3070 at 3246.931 kb on + strand, within Psest_3070 at 3246.932 kb on - strand, within Psest_3070
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 25 mM remove 3,244,311 - Psest_3068 0.50 +1.7 3,244,502 + Psest_3068 0.70 -0.9 3,244,502 + Psest_3068 0.70 -0.1 3,244,502 + Psest_3068 0.70 +1.3 3,244,607 - Psest_3068 0.81 -0.2 3,244,607 - Psest_3068 0.81 -0.4 3,244,647 - Psest_3068 0.85 -0.9 3,244,681 + Psest_3068 0.88 +0.5 3,244,681 + Psest_3068 0.88 +1.2 3,244,681 + Psest_3068 0.88 -1.1 3,244,681 + Psest_3068 0.88 +0.5 3,244,681 + Psest_3068 0.88 +0.2 3,244,681 + Psest_3068 0.88 -0.5 3,244,681 + Psest_3068 0.88 -1.8 3,244,681 + Psest_3068 0.88 +0.0 3,244,681 + Psest_3068 0.88 -0.4 3,244,681 + Psest_3068 0.88 -0.4 3,244,681 + Psest_3068 0.88 -1.2 3,244,681 + Psest_3068 0.88 -0.2 3,244,681 + Psest_3068 0.88 +1.3 3,244,681 + Psest_3068 0.88 +1.1 3,244,682 - Psest_3068 0.88 -0.7 3,244,771 - +0.6 3,244,771 - +0.3 3,244,772 + -1.6 3,244,772 + -1.6 3,244,772 + +1.7 3,244,772 + +0.4 3,244,772 + -0.5 3,244,772 + +1.9 3,244,773 - -0.8 3,244,773 - -2.1 3,244,773 - +0.6 3,244,856 + +0.6 3,244,856 + -0.4 3,244,902 + +0.2 3,244,903 - -0.4 3,244,903 - +0.9 3,245,005 - -0.2 3,245,035 + -0.5 3,245,035 + +0.8 3,245,089 - -0.7 3,245,174 - +1.2 3,245,208 + -0.1 3,245,208 + +0.2 3,245,209 - +0.4 3,245,209 - +0.1 3,245,237 - +0.6 3,245,578 + Psest_3069 0.51 -0.2 3,245,630 - Psest_3069 0.58 +1.2 3,245,630 - Psest_3069 0.58 +1.9 3,245,630 - Psest_3069 0.58 -2.4 3,245,762 + Psest_3069 0.74 +0.7 3,245,953 + +2.3 3,245,953 + +0.8 3,245,953 + +1.3 3,245,984 + -0.1 3,245,985 - +0.4 3,246,056 - +1.8 3,246,561 + Psest_3070 0.32 +0.3 3,246,931 + Psest_3070 0.63 -0.6 3,246,932 - Psest_3070 0.63 +1.6
Or see this region's nucleotide sequence