Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3102

Experiment: perchlorate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3101 and Psest_3102 overlap by 32 nucleotidesPsest_3102 and Psest_3103 overlap by 17 nucleotidesPsest_3103 and Psest_3104 are separated by 148 nucleotides Psest_3101: Psest_3101 - L-aspartate oxidase, at 3,279,365 to 3,280,981 _3101 Psest_3102: Psest_3102 - hypothetical protein, at 3,280,950 to 3,281,405 _3102 Psest_3103: Psest_3103 - Uncharacterized conserved protein, at 3,281,389 to 3,281,643 _3103 Psest_3104: Psest_3104 - folate-binding protein YgfZ, at 3,281,792 to 3,282,739 _3104 Position (kb) 3280 3281 3282Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3279.996 kb on - strand, within Psest_3101at 3279.996 kb on - strand, within Psest_3101at 3279.996 kb on - strand, within Psest_3101at 3280.110 kb on - strand, within Psest_3101at 3280.292 kb on + strand, within Psest_3101at 3280.350 kb on - strand, within Psest_3101at 3280.350 kb on - strand, within Psest_3101at 3280.368 kb on - strand, within Psest_3101at 3280.368 kb on - strand, within Psest_3101at 3280.418 kb on + strand, within Psest_3101at 3280.419 kb on - strand, within Psest_3101at 3280.419 kb on - strand, within Psest_3101at 3280.419 kb on - strand, within Psest_3101at 3280.419 kb on - strand, within Psest_3101at 3280.475 kb on + strand, within Psest_3101at 3280.476 kb on - strand, within Psest_3101at 3280.476 kb on - strand, within Psest_3101at 3280.604 kb on - strand, within Psest_3101at 3280.713 kb on - strand, within Psest_3101at 3280.713 kb on - strand, within Psest_3101at 3280.713 kb on - strand, within Psest_3101at 3280.713 kb on - strand, within Psest_3101at 3280.713 kb on - strand, within Psest_3101at 3280.713 kb on - strand, within Psest_3101at 3280.713 kb on - strand, within Psest_3101at 3280.797 kb on - strand, within Psest_3101at 3280.797 kb on - strand, within Psest_3101at 3280.797 kb on - strand, within Psest_3101at 3280.805 kb on + strand, within Psest_3101at 3280.805 kb on + strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.806 kb on - strand, within Psest_3101at 3280.908 kb on - strandat 3280.908 kb on - strandat 3280.952 kb on - strandat 3281.045 kb on + strand, within Psest_3102at 3281.045 kb on + strand, within Psest_3102at 3281.045 kb on + strand, within Psest_3102at 3281.045 kb on + strand, within Psest_3102at 3281.046 kb on - strand, within Psest_3102at 3281.046 kb on - strand, within Psest_3102at 3281.302 kb on + strand, within Psest_3102at 3281.302 kb on + strand, within Psest_3102at 3281.303 kb on - strand, within Psest_3102at 3281.303 kb on - strand, within Psest_3102at 3281.338 kb on + strand, within Psest_3102at 3281.338 kb on + strand, within Psest_3102at 3281.339 kb on - strand, within Psest_3102at 3281.339 kb on - strand, within Psest_3102at 3281.339 kb on - strand, within Psest_3102at 3281.339 kb on - strand, within Psest_3102at 3281.339 kb on - strand, within Psest_3102at 3281.339 kb on - strand, within Psest_3102at 3281.391 kb on - strandat 3281.644 kb on - strandat 3281.644 kb on - strandat 3281.644 kb on - strandat 3281.673 kb on + strandat 3281.673 kb on + strandat 3281.673 kb on + strandat 3281.673 kb on + strandat 3281.673 kb on + strandat 3281.673 kb on + strandat 3281.674 kb on - strandat 3281.674 kb on - strandat 3281.675 kb on + strandat 3281.675 kb on + strandat 3281.676 kb on - strandat 3281.676 kb on - strandat 3281.756 kb on + strandat 3281.756 kb on + strandat 3281.756 kb on + strandat 3281.756 kb on + strandat 3281.756 kb on + strandat 3281.757 kb on - strandat 3281.757 kb on - strandat 3281.757 kb on - strandat 3281.807 kb on + strandat 3281.807 kb on + strandat 3281.807 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 25 mM
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3,279,996 - Psest_3101 0.39 -0.0
3,279,996 - Psest_3101 0.39 +0.8
3,279,996 - Psest_3101 0.39 +1.0
3,280,110 - Psest_3101 0.46 -1.3
3,280,292 + Psest_3101 0.57 -1.0
3,280,350 - Psest_3101 0.61 -1.1
3,280,350 - Psest_3101 0.61 -0.9
3,280,368 - Psest_3101 0.62 +0.8
3,280,368 - Psest_3101 0.62 +0.0
3,280,418 + Psest_3101 0.65 -0.4
3,280,419 - Psest_3101 0.65 -0.3
3,280,419 - Psest_3101 0.65 +1.0
3,280,419 - Psest_3101 0.65 -1.2
3,280,419 - Psest_3101 0.65 +1.3
3,280,475 + Psest_3101 0.69 -0.5
3,280,476 - Psest_3101 0.69 +1.3
3,280,476 - Psest_3101 0.69 +1.2
3,280,604 - Psest_3101 0.77 +0.1
3,280,713 - Psest_3101 0.83 -0.9
3,280,713 - Psest_3101 0.83 +0.1
3,280,713 - Psest_3101 0.83 -0.4
3,280,713 - Psest_3101 0.83 +0.2
3,280,713 - Psest_3101 0.83 +1.4
3,280,713 - Psest_3101 0.83 -2.2
3,280,713 - Psest_3101 0.83 -2.4
3,280,797 - Psest_3101 0.89 +0.2
3,280,797 - Psest_3101 0.89 -0.5
3,280,797 - Psest_3101 0.89 +0.1
3,280,805 + Psest_3101 0.89 +1.3
3,280,805 + Psest_3101 0.89 -1.2
3,280,806 - Psest_3101 0.89 -0.0
3,280,806 - Psest_3101 0.89 +4.0
3,280,806 - Psest_3101 0.89 -0.5
3,280,806 - Psest_3101 0.89 -0.1
3,280,806 - Psest_3101 0.89 -2.5
3,280,806 - Psest_3101 0.89 +0.1
3,280,806 - Psest_3101 0.89 -0.2
3,280,806 - Psest_3101 0.89 -1.0
3,280,806 - Psest_3101 0.89 -1.1
3,280,806 - Psest_3101 0.89 -1.3
3,280,806 - Psest_3101 0.89 +0.4
3,280,806 - Psest_3101 0.89 -0.1
3,280,806 - Psest_3101 0.89 -0.7
3,280,908 - +0.9
3,280,908 - +0.1
3,280,952 - +1.0
3,281,045 + Psest_3102 0.21 +0.7
3,281,045 + Psest_3102 0.21 -1.2
3,281,045 + Psest_3102 0.21 +0.3
3,281,045 + Psest_3102 0.21 +0.8
3,281,046 - Psest_3102 0.21 +0.1
3,281,046 - Psest_3102 0.21 +0.2
3,281,302 + Psest_3102 0.77 -1.2
3,281,302 + Psest_3102 0.77 -1.7
3,281,303 - Psest_3102 0.77 -0.2
3,281,303 - Psest_3102 0.77 -1.2
3,281,338 + Psest_3102 0.85 -2.3
3,281,338 + Psest_3102 0.85 -0.7
3,281,339 - Psest_3102 0.85 +0.6
3,281,339 - Psest_3102 0.85 -0.5
3,281,339 - Psest_3102 0.85 -0.8
3,281,339 - Psest_3102 0.85 -0.5
3,281,339 - Psest_3102 0.85 -1.8
3,281,339 - Psest_3102 0.85 -0.7
3,281,391 - -0.4
3,281,644 - -0.1
3,281,644 - -0.2
3,281,644 - +3.8
3,281,673 + -0.4
3,281,673 + +2.1
3,281,673 + +1.5
3,281,673 + -0.1
3,281,673 + -0.5
3,281,673 + +0.0
3,281,674 - +0.4
3,281,674 - +1.1
3,281,675 + -1.8
3,281,675 + +1.0
3,281,676 - -0.4
3,281,676 - -0.8
3,281,756 + -1.1
3,281,756 + +0.9
3,281,756 + -1.1
3,281,756 + -1.3
3,281,756 + -1.3
3,281,757 - +0.8
3,281,757 - +0.6
3,281,757 - +1.4
3,281,807 + +0.7
3,281,807 + +1.3
3,281,807 + +3.3

Or see this region's nucleotide sequence