Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2581

Experiment: perchlorate 25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2579 and Psest_2580 are separated by 69 nucleotidesPsest_2580 and Psest_2581 are separated by 98 nucleotidesPsest_2581 and Psest_2582 overlap by 17 nucleotides Psest_2579: Psest_2579 - amidophosphoribosyltransferase, at 2,759,203 to 2,760,708 _2579 Psest_2580: Psest_2580 - Uncharacterized membrane protein, required for colicin V production, at 2,760,778 to 2,761,323 _2580 Psest_2581: Psest_2581 - Uncharacterized protein conserved in bacteria, at 2,761,422 to 2,762,054 _2581 Psest_2582: Psest_2582 - folylpolyglutamate synthase/dihydrofolate synthase, at 2,762,038 to 2,763,342 _2582 Position (kb) 2761 2762 2763Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2760.443 kb on + strand, within Psest_2579at 2760.646 kb on - strandat 2760.656 kb on + strandat 2760.657 kb on - strandat 2760.657 kb on - strandat 2760.726 kb on + strandat 2760.726 kb on + strandat 2760.727 kb on - strandat 2760.727 kb on - strandat 2760.727 kb on - strandat 2760.727 kb on - strandat 2760.727 kb on - strandat 2760.730 kb on - strandat 2760.744 kb on + strandat 2760.895 kb on + strand, within Psest_2580at 2760.895 kb on + strand, within Psest_2580at 2760.895 kb on + strand, within Psest_2580at 2760.896 kb on - strand, within Psest_2580at 2760.896 kb on - strand, within Psest_2580at 2760.896 kb on - strand, within Psest_2580at 2760.896 kb on - strand, within Psest_2580at 2760.896 kb on - strand, within Psest_2580at 2760.896 kb on - strand, within Psest_2580at 2760.896 kb on - strand, within Psest_2580at 2760.896 kb on - strand, within Psest_2580at 2760.896 kb on - strand, within Psest_2580at 2760.896 kb on - strand, within Psest_2580at 2761.122 kb on - strand, within Psest_2580at 2761.122 kb on - strand, within Psest_2580at 2761.122 kb on - strand, within Psest_2580at 2761.544 kb on + strand, within Psest_2581at 2761.545 kb on - strand, within Psest_2581at 2761.564 kb on + strand, within Psest_2581at 2761.565 kb on - strand, within Psest_2581at 2761.565 kb on - strand, within Psest_2581at 2761.573 kb on + strand, within Psest_2581

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 25 mM
remove
2,760,443 + Psest_2579 0.82 -0.1
2,760,646 - -1.0
2,760,656 + +2.7
2,760,657 - +1.4
2,760,657 - +2.8
2,760,726 + +3.5
2,760,726 + +0.4
2,760,727 - -0.9
2,760,727 - +0.3
2,760,727 - -0.1
2,760,727 - +1.5
2,760,727 - -0.8
2,760,730 - +0.1
2,760,744 + -0.8
2,760,895 + Psest_2580 0.21 -1.6
2,760,895 + Psest_2580 0.21 -0.1
2,760,895 + Psest_2580 0.21 +2.2
2,760,896 - Psest_2580 0.22 -0.5
2,760,896 - Psest_2580 0.22 +0.4
2,760,896 - Psest_2580 0.22 +2.9
2,760,896 - Psest_2580 0.22 -2.1
2,760,896 - Psest_2580 0.22 -1.1
2,760,896 - Psest_2580 0.22 -1.2
2,760,896 - Psest_2580 0.22 -1.5
2,760,896 - Psest_2580 0.22 -0.8
2,760,896 - Psest_2580 0.22 -0.6
2,760,896 - Psest_2580 0.22 +1.8
2,761,122 - Psest_2580 0.63 +0.6
2,761,122 - Psest_2580 0.63 +1.8
2,761,122 - Psest_2580 0.63 +0.8
2,761,544 + Psest_2581 0.19 +1.9
2,761,545 - Psest_2581 0.19 -1.6
2,761,564 + Psest_2581 0.22 +1.2
2,761,565 - Psest_2581 0.23 +0.7
2,761,565 - Psest_2581 0.23 -0.5
2,761,573 + Psest_2581 0.24 +1.4

Or see this region's nucleotide sequence