Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0083 and Psest_0084 overlap by 4 nucleotides Psest_0084 and Psest_0085 are separated by 134 nucleotides
Psest_0083: Psest_0083 - Uncharacterized conserved protein, at 84,675 to 85,082
_0083
Psest_0084: Psest_0084 - alpha-ketoglutarate TRAP transporter, 4TM/12TM components <small>(from data)</small>, at 85,079 to 87,103
_0084
Psest_0085: Psest_0085 - alpha-ketoglutarate TRAP transporter, solute receptor component <small>(from data)</small>, at 87,238 to 88,191
_0085
Position (kb) 85
86
87
88 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 84.120 kb on + strand at 84.120 kb on + strand at 84.121 kb on - strand at 84.121 kb on - strand at 84.121 kb on - strand at 84.121 kb on - strand at 84.121 kb on - strand at 84.121 kb on - strand at 84.221 kb on + strand at 84.222 kb on - strand at 84.499 kb on - strand at 84.591 kb on - strand at 84.591 kb on - strand at 84.591 kb on - strand at 84.605 kb on - strand at 84.707 kb on + strand at 84.707 kb on + strand at 84.707 kb on + strand at 84.800 kb on - strand, within Psest_0083 at 84.800 kb on - strand, within Psest_0083 at 84.863 kb on - strand, within Psest_0083 at 84.971 kb on - strand, within Psest_0083 at 85.241 kb on + strand at 85.241 kb on + strand at 85.241 kb on + strand at 85.241 kb on + strand at 85.241 kb on + strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.242 kb on - strand at 85.302 kb on + strand, within Psest_0084 at 85.302 kb on + strand, within Psest_0084 at 85.302 kb on + strand, within Psest_0084 at 85.302 kb on + strand, within Psest_0084 at 85.302 kb on + strand, within Psest_0084 at 85.302 kb on + strand, within Psest_0084 at 85.302 kb on + strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.303 kb on - strand, within Psest_0084 at 85.350 kb on + strand, within Psest_0084 at 85.350 kb on + strand, within Psest_0084 at 85.350 kb on + strand, within Psest_0084 at 85.350 kb on + strand, within Psest_0084 at 85.350 kb on + strand, within Psest_0084 at 85.351 kb on - strand, within Psest_0084 at 85.351 kb on - strand, within Psest_0084 at 85.351 kb on - strand, within Psest_0084 at 85.351 kb on - strand, within Psest_0084 at 85.497 kb on + strand, within Psest_0084 at 85.497 kb on + strand, within Psest_0084 at 85.497 kb on + strand, within Psest_0084 at 85.497 kb on + strand, within Psest_0084 at 85.497 kb on + strand, within Psest_0084 at 85.498 kb on - strand, within Psest_0084 at 85.498 kb on - strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.578 kb on + strand, within Psest_0084 at 85.579 kb on - strand, within Psest_0084 at 85.678 kb on - strand, within Psest_0084 at 85.844 kb on + strand, within Psest_0084 at 85.845 kb on - strand, within Psest_0084 at 86.190 kb on + strand, within Psest_0084 at 86.190 kb on + strand, within Psest_0084 at 86.190 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.565 kb on + strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.566 kb on - strand, within Psest_0084 at 86.580 kb on + strand, within Psest_0084 at 86.580 kb on + strand, within Psest_0084 at 86.581 kb on - strand, within Psest_0084 at 86.581 kb on - strand, within Psest_0084 at 86.581 kb on - strand, within Psest_0084 at 86.581 kb on - strand, within Psest_0084 at 86.595 kb on + strand, within Psest_0084 at 86.618 kb on + strand, within Psest_0084 at 86.643 kb on + strand, within Psest_0084 at 86.643 kb on + strand, within Psest_0084 at 86.643 kb on + strand, within Psest_0084 at 86.644 kb on - strand, within Psest_0084 at 86.644 kb on - strand, within Psest_0084 at 86.644 kb on - strand, within Psest_0084 at 86.644 kb on - strand, within Psest_0084 at 86.646 kb on + strand, within Psest_0084 at 86.646 kb on + strand, within Psest_0084 at 86.676 kb on + strand, within Psest_0084 at 86.677 kb on - strand, within Psest_0084 at 86.841 kb on + strand at 86.841 kb on + strand, within Psest_0084 at 86.841 kb on + strand, within Psest_0084 at 86.841 kb on + strand, within Psest_0084 at 86.841 kb on + strand, within Psest_0084 at 86.842 kb on - strand, within Psest_0084 at 86.842 kb on - strand, within Psest_0084 at 86.842 kb on - strand, within Psest_0084 at 87.021 kb on + strand at 87.022 kb on - strand at 87.045 kb on + strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.046 kb on - strand at 87.137 kb on + strand at 87.137 kb on + strand at 87.137 kb on + strand at 87.137 kb on + strand at 87.137 kb on + strand at 87.138 kb on - strand at 87.181 kb on + strand at 87.181 kb on + strand at 87.182 kb on - strand at 87.239 kb on + strand at 87.239 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.263 kb on + strand at 87.264 kb on - strand at 87.264 kb on - strand at 87.396 kb on - strand, within Psest_0085 at 87.479 kb on + strand, within Psest_0085 at 87.479 kb on + strand, within Psest_0085 at 87.479 kb on + strand, within Psest_0085 at 87.480 kb on - strand, within Psest_0085 at 87.480 kb on - strand, within Psest_0085 at 87.480 kb on - strand, within Psest_0085 at 87.510 kb on - strand, within Psest_0085 at 87.668 kb on + strand, within Psest_0085 at 87.668 kb on + strand, within Psest_0085 at 87.668 kb on + strand, within Psest_0085 at 87.668 kb on + strand, within Psest_0085 at 87.701 kb on + strand, within Psest_0085 at 87.701 kb on + strand, within Psest_0085 at 87.701 kb on + strand, within Psest_0085 at 87.701 kb on + strand, within Psest_0085 at 87.702 kb on - strand, within Psest_0085 at 87.702 kb on - strand, within Psest_0085 at 87.702 kb on - strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.839 kb on + strand, within Psest_0085 at 87.840 kb on - strand, within Psest_0085 at 87.840 kb on - strand, within Psest_0085 at 87.840 kb on - strand, within Psest_0085 at 87.840 kb on - strand, within Psest_0085 at 87.840 kb on - strand, within Psest_0085 at 87.840 kb on - strand, within Psest_0085 at 87.848 kb on + strand, within Psest_0085 at 87.848 kb on + strand, within Psest_0085 at 87.848 kb on + strand, within Psest_0085 at 87.848 kb on + strand, within Psest_0085 at 87.848 kb on + strand, within Psest_0085 at 87.848 kb on + strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.849 kb on - strand, within Psest_0085 at 87.988 kb on + strand, within Psest_0085 at 88.040 kb on + strand, within Psest_0085 at 88.040 kb on + strand, within Psest_0085 at 88.040 kb on + strand, within Psest_0085 at 88.040 kb on + strand, within Psest_0085 at 88.040 kb on + strand, within Psest_0085 at 88.040 kb on + strand, within Psest_0085 at 88.041 kb on - strand, within Psest_0085 at 88.041 kb on - strand, within Psest_0085 at 88.073 kb on + strand, within Psest_0085 at 88.073 kb on + strand, within Psest_0085 at 88.074 kb on - strand, within Psest_0085 at 88.074 kb on - strand, within Psest_0085 at 88.074 kb on - strand, within Psest_0085
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 84,120 + -1.9 84,120 + +2.6 84,121 - -2.5 84,121 - -1.4 84,121 - +1.4 84,121 - +1.6 84,121 - -1.1 84,121 - +1.7 84,221 + -0.5 84,222 - -1.1 84,499 - +0.2 84,591 - -3.2 84,591 - -0.6 84,591 - -1.4 84,605 - -2.3 84,707 + +0.6 84,707 + -1.6 84,707 + -1.9 84,800 - Psest_0083 0.31 +1.4 84,800 - Psest_0083 0.31 +1.9 84,863 - Psest_0083 0.46 -0.8 84,971 - Psest_0083 0.73 +1.8 85,241 + +1.2 85,241 + -2.4 85,241 + +1.6 85,241 + +0.0 85,241 + +1.0 85,242 - +0.0 85,242 - -0.0 85,242 - +0.2 85,242 - -0.5 85,242 - -0.3 85,242 - +1.2 85,242 - +0.2 85,242 - -2.4 85,302 + Psest_0084 0.11 -2.1 85,302 + Psest_0084 0.11 -3.0 85,302 + Psest_0084 0.11 +0.5 85,302 + Psest_0084 0.11 -1.0 85,302 + Psest_0084 0.11 +1.3 85,302 + Psest_0084 0.11 +0.2 85,302 + Psest_0084 0.11 -0.4 85,303 - Psest_0084 0.11 -0.8 85,303 - Psest_0084 0.11 +0.6 85,303 - Psest_0084 0.11 -0.4 85,303 - Psest_0084 0.11 +2.0 85,303 - Psest_0084 0.11 +0.2 85,303 - Psest_0084 0.11 -0.2 85,303 - Psest_0084 0.11 +0.9 85,303 - Psest_0084 0.11 -2.5 85,350 + Psest_0084 0.13 +2.6 85,350 + Psest_0084 0.13 -0.5 85,350 + Psest_0084 0.13 +0.1 85,350 + Psest_0084 0.13 -2.1 85,350 + Psest_0084 0.13 -2.4 85,351 - Psest_0084 0.13 -1.4 85,351 - Psest_0084 0.13 -1.6 85,351 - Psest_0084 0.13 -0.0 85,351 - Psest_0084 0.13 -1.6 85,497 + Psest_0084 0.21 +0.5 85,497 + Psest_0084 0.21 -1.7 85,497 + Psest_0084 0.21 -0.5 85,497 + Psest_0084 0.21 -0.3 85,497 + Psest_0084 0.21 -1.3 85,498 - Psest_0084 0.21 -1.9 85,498 - Psest_0084 0.21 -0.6 85,578 + Psest_0084 0.25 +0.2 85,578 + Psest_0084 0.25 +0.0 85,578 + Psest_0084 0.25 -1.1 85,578 + Psest_0084 0.25 +1.4 85,578 + Psest_0084 0.25 -0.4 85,578 + Psest_0084 0.25 -1.5 85,578 + Psest_0084 0.25 +0.7 85,578 + Psest_0084 0.25 +3.7 85,578 + Psest_0084 0.25 +0.9 85,579 - Psest_0084 0.25 +0.4 85,678 - Psest_0084 0.30 -1.6 85,844 + Psest_0084 0.38 +0.6 85,845 - Psest_0084 0.38 -1.6 86,190 + Psest_0084 0.55 -0.7 86,190 + Psest_0084 0.55 -1.9 86,190 + Psest_0084 0.55 -1.4 86,565 + Psest_0084 0.73 -0.6 86,565 + Psest_0084 0.73 -0.7 86,565 + Psest_0084 0.73 -0.3 86,565 + Psest_0084 0.73 +1.3 86,565 + Psest_0084 0.73 +2.2 86,565 + Psest_0084 0.73 +1.2 86,565 + Psest_0084 0.73 -0.3 86,565 + Psest_0084 0.73 -1.4 86,565 + Psest_0084 0.73 -0.4 86,565 + Psest_0084 0.73 +3.0 86,565 + Psest_0084 0.73 +2.8 86,565 + Psest_0084 0.73 -0.2 86,566 - Psest_0084 0.73 -2.0 86,566 - Psest_0084 0.73 -0.7 86,566 - Psest_0084 0.73 +2.0 86,566 - Psest_0084 0.73 -1.2 86,566 - Psest_0084 0.73 +2.8 86,566 - Psest_0084 0.73 -1.0 86,566 - Psest_0084 0.73 +1.4 86,566 - Psest_0084 0.73 -0.2 86,566 - Psest_0084 0.73 -2.4 86,566 - Psest_0084 0.73 +0.7 86,566 - Psest_0084 0.73 +0.6 86,566 - Psest_0084 0.73 -0.8 86,566 - Psest_0084 0.73 -0.4 86,566 - Psest_0084 0.73 -0.1 86,566 - Psest_0084 0.73 +2.5 86,566 - Psest_0084 0.73 +0.3 86,580 + Psest_0084 0.74 -0.4 86,580 + Psest_0084 0.74 +0.2 86,581 - Psest_0084 0.74 -0.8 86,581 - Psest_0084 0.74 -0.9 86,581 - Psest_0084 0.74 +0.2 86,581 - Psest_0084 0.74 +0.2 86,595 + Psest_0084 0.75 -1.8 86,618 + Psest_0084 0.76 -0.5 86,643 + Psest_0084 0.77 -0.2 86,643 + Psest_0084 0.77 -0.7 86,643 + Psest_0084 0.77 +2.1 86,644 - Psest_0084 0.77 +1.0 86,644 - Psest_0084 0.77 -0.0 86,644 - Psest_0084 0.77 -1.2 86,644 - Psest_0084 0.77 +0.4 86,646 + Psest_0084 0.77 -0.8 86,646 + Psest_0084 0.77 +1.9 86,676 + Psest_0084 0.79 -1.2 86,677 - Psest_0084 0.79 -2.8 86,841 + +0.4 86,841 + Psest_0084 0.87 +0.8 86,841 + Psest_0084 0.87 +0.6 86,841 + Psest_0084 0.87 -1.5 86,841 + Psest_0084 0.87 -0.6 86,842 - Psest_0084 0.87 +1.1 86,842 - Psest_0084 0.87 +0.9 86,842 - Psest_0084 0.87 -2.9 87,021 + +1.3 87,022 - +0.6 87,045 + -0.8 87,046 - +2.0 87,046 - -1.3 87,046 - +0.0 87,046 - +1.4 87,046 - +1.0 87,046 - +1.7 87,046 - +1.8 87,046 - +1.4 87,046 - +0.4 87,137 + -0.4 87,137 + -0.6 87,137 + -1.4 87,137 + +1.6 87,137 + -0.4 87,138 - -0.8 87,181 + -0.2 87,181 + +1.3 87,182 - -0.9 87,239 + -1.1 87,239 + +0.1 87,263 + -1.0 87,263 + +0.3 87,263 + +1.2 87,263 + -0.3 87,263 + +0.3 87,263 + -0.4 87,263 + +0.9 87,263 + +0.3 87,264 - +1.4 87,264 - +1.8 87,396 - Psest_0085 0.17 +0.2 87,479 + Psest_0085 0.25 -1.7 87,479 + Psest_0085 0.25 -0.4 87,479 + Psest_0085 0.25 +0.3 87,480 - Psest_0085 0.25 +1.0 87,480 - Psest_0085 0.25 +1.2 87,480 - Psest_0085 0.25 +1.4 87,510 - Psest_0085 0.29 -0.8 87,668 + Psest_0085 0.45 +0.4 87,668 + Psest_0085 0.45 -0.4 87,668 + Psest_0085 0.45 -0.4 87,668 + Psest_0085 0.45 -2.5 87,701 + Psest_0085 0.49 -1.0 87,701 + Psest_0085 0.49 -0.2 87,701 + Psest_0085 0.49 +1.0 87,701 + Psest_0085 0.49 -1.4 87,702 - Psest_0085 0.49 -1.0 87,702 - Psest_0085 0.49 +1.1 87,702 - Psest_0085 0.49 -0.2 87,839 + Psest_0085 0.63 +1.5 87,839 + Psest_0085 0.63 -1.6 87,839 + Psest_0085 0.63 -0.4 87,839 + Psest_0085 0.63 +0.2 87,839 + Psest_0085 0.63 +1.0 87,839 + Psest_0085 0.63 -1.2 87,839 + Psest_0085 0.63 +2.2 87,840 - Psest_0085 0.63 +0.1 87,840 - Psest_0085 0.63 -0.3 87,840 - Psest_0085 0.63 -0.6 87,840 - Psest_0085 0.63 -0.5 87,840 - Psest_0085 0.63 +0.5 87,840 - Psest_0085 0.63 -0.6 87,848 + Psest_0085 0.64 -1.6 87,848 + Psest_0085 0.64 +1.9 87,848 + Psest_0085 0.64 +0.6 87,848 + Psest_0085 0.64 +1.9 87,848 + Psest_0085 0.64 +0.8 87,848 + Psest_0085 0.64 -0.0 87,849 - Psest_0085 0.64 +0.5 87,849 - Psest_0085 0.64 -1.3 87,849 - Psest_0085 0.64 +0.3 87,849 - Psest_0085 0.64 -0.7 87,849 - Psest_0085 0.64 -1.4 87,849 - Psest_0085 0.64 -2.1 87,849 - Psest_0085 0.64 -0.0 87,849 - Psest_0085 0.64 -1.3 87,849 - Psest_0085 0.64 -1.4 87,988 + Psest_0085 0.79 -0.7 88,040 + Psest_0085 0.84 -0.2 88,040 + Psest_0085 0.84 -0.7 88,040 + Psest_0085 0.84 +2.1 88,040 + Psest_0085 0.84 +1.8 88,040 + Psest_0085 0.84 +0.5 88,040 + Psest_0085 0.84 -2.3 88,041 - Psest_0085 0.84 -0.3 88,041 - Psest_0085 0.84 -0.6 88,073 + Psest_0085 0.88 +1.0 88,073 + Psest_0085 0.88 -2.1 88,074 - Psest_0085 0.88 -1.0 88,074 - Psest_0085 0.88 +0.5 88,074 - Psest_0085 0.88 +1.5
Or see this region's nucleotide sequence