Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0539 and Psest_0540 are separated by 20 nucleotides Psest_0540 and Psest_0541 are separated by 523 nucleotides
Psest_0539: Psest_0539 - Acyl-CoA dehydrogenases, at 593,128 to 594,774
_0539
Psest_0540: Psest_0540 - Ion transport protein., at 594,795 to 595,637
_0540
Psest_0541: Psest_0541 - succinate CoA transferases, at 596,161 to 597,672
_0541
Position (kb) 594
595
596 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.899 kb on + strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.900 kb on - strand, within Psest_0539 at 593.901 kb on + strand, within Psest_0539 at 594.289 kb on + strand, within Psest_0539 at 594.289 kb on + strand, within Psest_0539 at 594.290 kb on - strand, within Psest_0539 at 594.290 kb on - strand, within Psest_0539 at 594.290 kb on - strand, within Psest_0539 at 594.290 kb on - strand, within Psest_0539 at 594.356 kb on - strand, within Psest_0539 at 594.356 kb on - strand, within Psest_0539 at 594.816 kb on + strand at 595.033 kb on + strand, within Psest_0540 at 595.034 kb on - strand, within Psest_0540 at 595.108 kb on + strand, within Psest_0540 at 595.109 kb on - strand, within Psest_0540 at 595.109 kb on - strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.186 kb on + strand, within Psest_0540 at 595.187 kb on - strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.417 kb on + strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.418 kb on - strand, within Psest_0540 at 595.644 kb on + strand at 595.644 kb on + strand at 595.644 kb on + strand at 595.644 kb on + strand at 595.644 kb on + strand at 595.645 kb on - strand at 595.697 kb on + strand at 595.720 kb on - strand at 595.929 kb on - strand at 595.931 kb on + strand at 595.931 kb on + strand at 595.931 kb on + strand at 595.932 kb on - strand at 595.932 kb on - strand at 595.932 kb on - strand at 595.932 kb on - strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.939 kb on + strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.940 kb on - strand at 595.941 kb on + strand at 595.941 kb on + strand at 595.966 kb on + strand at 595.966 kb on + strand at 595.966 kb on + strand at 595.966 kb on + strand at 595.967 kb on - strand at 595.967 kb on - strand at 595.984 kb on + strand at 595.985 kb on - strand at 596.029 kb on + strand at 596.174 kb on + strand at 596.174 kb on + strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.175 kb on - strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.182 kb on + strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.183 kb on - strand at 596.482 kb on + strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541 at 596.483 kb on - strand, within Psest_0541
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 593,899 + Psest_0539 0.47 -2.5 593,899 + Psest_0539 0.47 +0.4 593,899 + Psest_0539 0.47 +0.3 593,899 + Psest_0539 0.47 -1.8 593,899 + Psest_0539 0.47 -0.7 593,899 + Psest_0539 0.47 -0.4 593,899 + Psest_0539 0.47 +1.7 593,899 + Psest_0539 0.47 -0.6 593,899 + Psest_0539 0.47 +0.7 593,899 + Psest_0539 0.47 -0.5 593,899 + Psest_0539 0.47 +0.7 593,899 + Psest_0539 0.47 +1.2 593,899 + Psest_0539 0.47 -2.8 593,899 + Psest_0539 0.47 +1.9 593,899 + Psest_0539 0.47 +0.3 593,899 + Psest_0539 0.47 -1.1 593,899 + Psest_0539 0.47 -0.2 593,899 + Psest_0539 0.47 -1.2 593,900 - Psest_0539 0.47 +1.4 593,900 - Psest_0539 0.47 -0.4 593,900 - Psest_0539 0.47 -1.7 593,900 - Psest_0539 0.47 +0.2 593,900 - Psest_0539 0.47 -0.6 593,900 - Psest_0539 0.47 +0.6 593,900 - Psest_0539 0.47 -1.3 593,900 - Psest_0539 0.47 +0.4 593,901 + Psest_0539 0.47 +1.2 594,289 + Psest_0539 0.70 +3.0 594,289 + Psest_0539 0.70 -0.1 594,290 - Psest_0539 0.71 -2.0 594,290 - Psest_0539 0.71 +2.1 594,290 - Psest_0539 0.71 +0.5 594,290 - Psest_0539 0.71 +2.7 594,356 - Psest_0539 0.75 -0.6 594,356 - Psest_0539 0.75 -0.6 594,816 + +3.0 595,033 + Psest_0540 0.28 -0.3 595,034 - Psest_0540 0.28 +1.4 595,108 + Psest_0540 0.37 +2.3 595,109 - Psest_0540 0.37 +1.8 595,109 - Psest_0540 0.37 -0.9 595,186 + Psest_0540 0.46 +0.2 595,186 + Psest_0540 0.46 +1.9 595,186 + Psest_0540 0.46 -0.4 595,186 + Psest_0540 0.46 +0.8 595,186 + Psest_0540 0.46 -0.2 595,186 + Psest_0540 0.46 -2.1 595,186 + Psest_0540 0.46 +0.2 595,187 - Psest_0540 0.47 +0.7 595,417 + Psest_0540 0.74 +0.3 595,417 + Psest_0540 0.74 +0.4 595,417 + Psest_0540 0.74 +0.7 595,417 + Psest_0540 0.74 +4.2 595,417 + Psest_0540 0.74 +0.9 595,417 + Psest_0540 0.74 -2.2 595,418 - Psest_0540 0.74 -0.5 595,418 - Psest_0540 0.74 +1.2 595,418 - Psest_0540 0.74 +1.7 595,418 - Psest_0540 0.74 +0.4 595,418 - Psest_0540 0.74 -1.1 595,418 - Psest_0540 0.74 +0.0 595,418 - Psest_0540 0.74 +0.9 595,418 - Psest_0540 0.74 -2.0 595,418 - Psest_0540 0.74 -2.6 595,418 - Psest_0540 0.74 +1.9 595,418 - Psest_0540 0.74 +0.6 595,644 + -0.5 595,644 + +3.7 595,644 + +0.2 595,644 + -1.4 595,644 + +0.2 595,645 - -3.2 595,697 + +0.7 595,720 - -1.1 595,929 - -2.4 595,931 + -0.5 595,931 + +1.7 595,931 + +0.5 595,932 - -0.9 595,932 - -2.3 595,932 - -3.2 595,932 - -1.1 595,939 + +1.5 595,939 + +0.4 595,939 + +0.7 595,939 + +1.1 595,939 + +1.2 595,939 + -0.1 595,939 + +0.2 595,939 + -1.5 595,939 + -0.9 595,940 - +3.0 595,940 - +0.3 595,940 - -1.1 595,940 - -2.1 595,940 - -1.2 595,940 - -1.3 595,940 - +2.8 595,940 - +1.1 595,940 - -1.2 595,940 - +0.4 595,940 - +0.3 595,940 - +1.2 595,940 - +0.9 595,941 + +0.3 595,941 + -0.1 595,966 + -0.8 595,966 + -1.7 595,966 + -0.8 595,966 + +0.5 595,967 - -3.9 595,967 - +1.5 595,984 + +0.7 595,985 - -0.2 596,029 + -0.4 596,174 + +0.0 596,174 + -2.3 596,175 - -0.6 596,175 - +1.1 596,175 - -1.9 596,175 - +1.7 596,175 - -1.1 596,182 + -1.2 596,182 + -0.6 596,182 + -2.6 596,182 + -1.9 596,182 + -0.8 596,182 + -2.0 596,182 + -0.3 596,182 + -1.4 596,182 + -0.6 596,182 + +0.7 596,182 + +1.1 596,183 - +0.8 596,183 - +1.3 596,183 - -1.3 596,183 - -2.5 596,183 - -0.0 596,183 - -0.6 596,183 - -0.6 596,183 - -2.1 596,183 - +0.3 596,482 + Psest_0541 0.21 +0.4 596,483 - Psest_0541 0.21 -0.3 596,483 - Psest_0541 0.21 +1.9 596,483 - Psest_0541 0.21 -0.6 596,483 - Psest_0541 0.21 -1.9 596,483 - Psest_0541 0.21 -0.8 596,483 - Psest_0541 0.21 -1.4 596,483 - Psest_0541 0.21 +0.9 596,483 - Psest_0541 0.21 +0.1
Or see this region's nucleotide sequence