Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4315

Experiment: nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4314 and Psest_4315 overlap by 1 nucleotidesPsest_4315 and Psest_4316 are separated by 58 nucleotides Psest_4314: Psest_4314 - ABC-type metal ion transport system, ATPase component, at 4,514,294 to 4,515,301 _4314 Psest_4315: Psest_4315 - ABC-type metal ion transport system, permease component, at 4,515,301 to 4,515,978 _4315 Psest_4316: Psest_4316 - ABC-type metal ion transport system, periplasmic component/surface antigen, at 4,516,037 to 4,516,807 _4316 Position (kb) 4515 4516Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4514.705 kb on + strand, within Psest_4314at 4515.116 kb on + strand, within Psest_4314at 4515.116 kb on + strand, within Psest_4314at 4515.116 kb on + strand, within Psest_4314at 4515.116 kb on + strand, within Psest_4314at 4515.116 kb on + strand, within Psest_4314at 4515.116 kb on + strand, within Psest_4314at 4515.117 kb on - strand, within Psest_4314at 4515.117 kb on - strand, within Psest_4314at 4515.117 kb on - strand, within Psest_4314at 4515.117 kb on - strand, within Psest_4314at 4515.117 kb on - strand, within Psest_4314at 4515.117 kb on - strand, within Psest_4314at 4515.117 kb on - strand, within Psest_4314at 4515.161 kb on + strand, within Psest_4314at 4515.162 kb on - strand, within Psest_4314at 4515.207 kb on - strandat 4515.315 kb on + strandat 4515.315 kb on + strandat 4515.316 kb on - strandat 4515.481 kb on + strand, within Psest_4315at 4515.481 kb on + strand, within Psest_4315at 4515.668 kb on + strand, within Psest_4315at 4515.668 kb on + strand, within Psest_4315at 4515.668 kb on + strand, within Psest_4315at 4515.802 kb on + strand, within Psest_4315at 4515.803 kb on - strand, within Psest_4315at 4515.803 kb on - strand, within Psest_4315at 4515.976 kb on + strandat 4515.976 kb on + strandat 4516.202 kb on + strand, within Psest_4316at 4516.202 kb on + strand, within Psest_4316at 4516.203 kb on - strand, within Psest_4316at 4516.203 kb on - strand, within Psest_4316at 4516.268 kb on + strand, within Psest_4316at 4516.346 kb on + strand, within Psest_4316at 4516.346 kb on + strand, within Psest_4316at 4516.604 kb on + strand, within Psest_4316at 4516.604 kb on + strand, within Psest_4316at 4516.605 kb on - strand, within Psest_4316at 4516.778 kb on + strandat 4516.779 kb on - strandat 4516.871 kb on + strandat 4516.872 kb on - strandat 4516.910 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
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4,514,705 + Psest_4314 0.41 -1.3
4,515,116 + Psest_4314 0.82 +2.6
4,515,116 + Psest_4314 0.82 -1.0
4,515,116 + Psest_4314 0.82 -0.4
4,515,116 + Psest_4314 0.82 -0.9
4,515,116 + Psest_4314 0.82 -1.4
4,515,116 + Psest_4314 0.82 +1.4
4,515,117 - Psest_4314 0.82 -2.1
4,515,117 - Psest_4314 0.82 +1.0
4,515,117 - Psest_4314 0.82 -1.4
4,515,117 - Psest_4314 0.82 +1.6
4,515,117 - Psest_4314 0.82 -0.8
4,515,117 - Psest_4314 0.82 -0.4
4,515,117 - Psest_4314 0.82 -2.4
4,515,161 + Psest_4314 0.86 -2.4
4,515,162 - Psest_4314 0.86 +0.2
4,515,207 - -0.6
4,515,315 + -1.9
4,515,315 + -0.7
4,515,316 - -0.4
4,515,481 + Psest_4315 0.27 -0.4
4,515,481 + Psest_4315 0.27 +2.6
4,515,668 + Psest_4315 0.54 +1.8
4,515,668 + Psest_4315 0.54 -0.1
4,515,668 + Psest_4315 0.54 -0.2
4,515,802 + Psest_4315 0.74 -1.3
4,515,803 - Psest_4315 0.74 +2.5
4,515,803 - Psest_4315 0.74 -0.0
4,515,976 + -1.1
4,515,976 + -0.0
4,516,202 + Psest_4316 0.21 +2.3
4,516,202 + Psest_4316 0.21 +0.6
4,516,203 - Psest_4316 0.22 +0.2
4,516,203 - Psest_4316 0.22 -1.3
4,516,268 + Psest_4316 0.30 -2.0
4,516,346 + Psest_4316 0.40 -1.8
4,516,346 + Psest_4316 0.40 -1.0
4,516,604 + Psest_4316 0.74 -1.1
4,516,604 + Psest_4316 0.74 -1.3
4,516,605 - Psest_4316 0.74 -2.8
4,516,778 + -3.4
4,516,779 - -0.2
4,516,871 + -1.8
4,516,872 - -0.3
4,516,910 + -2.3

Or see this region's nucleotide sequence