Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4253

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
4,438,868	+		Psest_4251	0.89	-0.0
4,438,886	+		Psest_4251	0.90	-2.0
4,438,915	+				-0.7
4,438,915	+				-0.3
4,438,915	+				-1.4
4,438,915	+				-1.3
4,438,915	+				+0.1
4,438,915	+				+0.8
4,438,915	+				-0.1
4,438,916	-				+0.8
4,438,916	-				+0.9
4,438,916	-				-1.0
4,438,920	-				-0.6
4,438,920	-				-0.4
4,438,920	-				-1.1
4,438,939	+				+0.7
4,438,939	+				-0.6
4,438,940	-				+0.4
4,438,988	+				+1.9
4,438,988	+				+2.0
4,438,989	-				+3.0
4,438,989	-				-0.9
4,438,989	-				+1.3
4,439,026	+				-0.4
4,439,027	-				-1.6
4,439,038	-				-1.3
4,439,093	+				-0.1
4,439,099	-				-1.7
4,439,099	-				+1.0
4,439,102	+				-0.7
4,439,103	-				+3.6
4,439,109	+				-2.9
4,439,110	-				-1.8
4,439,128	+				-0.8
4,439,170	+				-1.9
4,439,170	+				+1.7
4,439,182	-				+1.1
4,439,192	+				+1.8
4,439,244	+		Psest_4252	0.17	-1.7
4,439,301	+		Psest_4252	0.31	-1.4
4,439,339	-		Psest_4252	0.40	-0.9
4,439,390	+		Psest_4252	0.53	+2.3
4,439,401	+		Psest_4252	0.55	-1.5
4,439,402	-		Psest_4252	0.56	-4.1
4,439,402	-		Psest_4252	0.56	-2.4
4,439,480	+		Psest_4252	0.75	+3.1
4,439,554	+				-0.1
4,439,579	+				-1.6
4,439,579	+				+1.3
4,439,579	+				+0.6
4,439,579	+				-1.2
4,439,579	+				-0.5
4,439,579	+				+0.2
4,439,579	+				-0.6
4,439,580	-				-1.6
4,439,589	-				+2.7
4,439,606	+				-2.2
4,439,606	+				-1.2
4,439,606	+				+1.7
4,439,606	+				-2.0
4,439,607	-				-0.9
4,439,626	-				+0.6
4,439,630	+				-1.3
4,439,630	+				+0.6
4,439,653	+				-0.9
4,439,734	-				+1.2
4,439,734	-				+1.0
4,439,744	-				+1.2
4,439,744	-				-0.1
4,439,818	-				+0.7
4,439,818	-				-0.2
4,439,818	-				+0.9
4,439,818	-				-1.4
4,439,847	+				+1.7
4,439,871	+				-0.5
4,439,871	+				+0.6
4,439,872	-				-0.7
4,439,872	-				-1.8
4,439,907	+				-0.4
4,439,907	+				+0.8
4,439,908	-				+1.0
4,439,910	+				-0.5
4,439,910	+				+0.2
4,439,910	+				-2.0
4,439,910	+				+1.0
4,439,910	+				+1.5
4,439,911	-				+1.3
4,439,911	-				+0.3
4,439,911	-				-0.9
4,439,911	-				-1.1
4,439,911	-				-1.1
4,439,911	-				+0.8
4,439,911	-				+1.3
4,439,911	-				+1.0
4,439,913	+				-1.7
4,439,913	+				+1.7
4,439,913	+				+1.1
4,439,913	+				-2.6
4,439,913	+				+0.7
4,439,913	+				-2.8
4,439,913	+				-0.7
4,439,913	+				-1.4
4,439,914	-				+1.3
4,439,914	-				+1.2
4,439,914	-				-1.3
4,439,914	-				+1.5
4,439,949	+		Psest_4253	0.11	+1.2
4,440,010	-		Psest_4253	0.14	+0.9
4,440,123	+		Psest_4253	0.20	-0.8
4,440,288	+		Psest_4253	0.29	-0.1
4,440,288	+		Psest_4253	0.29	-0.2
4,440,288	+		Psest_4253	0.29	+0.3
4,440,288	+		Psest_4253	0.29	+1.2
4,440,288	+		Psest_4253	0.29	+0.8
4,440,288	+		Psest_4253	0.29	+0.4
4,440,288	+		Psest_4253	0.29	-1.8
4,440,288	+		Psest_4253	0.29	+2.2
4,440,288	+		Psest_4253	0.29	+1.6
4,440,289	-		Psest_4253	0.29	-0.8
4,440,289	-		Psest_4253	0.29	-0.4
4,440,289	-		Psest_4253	0.29	-1.8
4,440,289	-		Psest_4253	0.29	-0.4
4,440,291	+		Psest_4253	0.29	-1.3
4,440,291	+		Psest_4253	0.29	-1.3
4,440,291	+		Psest_4253	0.29	-1.8
4,440,291	+		Psest_4253	0.29	+0.1
4,440,292	-		Psest_4253	0.29	-0.3
4,440,292	-		Psest_4253	0.29	-0.2
4,440,292	-		Psest_4253	0.29	-0.2
4,440,343	-		Psest_4253	0.32	-0.3
4,440,411	+		Psest_4253	0.35	+0.6
4,440,411	+		Psest_4253	0.35	-0.4
4,440,412	-		Psest_4253	0.35	+0.6
4,440,412	-		Psest_4253	0.35	-0.7
4,440,412	-		Psest_4253	0.35	-1.5
4,440,412	-		Psest_4253	0.35	-0.6
4,440,522	+		Psest_4253	0.41	-1.0
4,440,550	-		Psest_4253	0.43	+0.9
4,440,705	+		Psest_4253	0.51	-1.8
4,440,724	+		Psest_4253	0.52	+0.9
4,440,837	+		Psest_4253	0.58	+0.3
4,440,837	+		Psest_4253	0.58	+0.0
4,440,838	-		Psest_4253	0.58	+1.0
4,440,838	-		Psest_4253	0.58	-1.0
4,440,838	-		Psest_4253	0.58	+0.6
4,440,977	+		Psest_4253	0.66	-0.6
4,440,977	+		Psest_4253	0.66	+0.5
4,440,977	+		Psest_4253	0.66	-1.1
4,440,978	-		Psest_4253	0.66	+1.5
4,440,978	-		Psest_4253	0.66	-0.4
4,440,978	-		Psest_4253	0.66	-1.9
4,441,053	+		Psest_4253	0.70	-1.8
4,441,053	+		Psest_4253	0.70	+0.1
4,441,053	+		Psest_4253	0.70	-1.0
4,441,054	-		Psest_4253	0.70	-0.8
4,441,113	+		Psest_4253	0.73	+0.5
4,441,113	+		Psest_4253	0.73	-2.4
4,441,113	+		Psest_4253	0.73	-0.4
4,441,113	+		Psest_4253	0.73	+0.6
4,441,113	+		Psest_4253	0.73	+0.4
4,441,113	+		Psest_4253	0.73	+0.8
4,441,114	-		Psest_4253	0.73	+0.3
4,441,114	-		Psest_4253	0.73	-0.8
4,441,114	-		Psest_4253	0.73	-2.2
4,441,114	-		Psest_4253	0.73	-0.0
4,441,114	-		Psest_4253	0.73	-0.7
4,441,114	-		Psest_4253	0.73	+0.5
4,441,114	-		Psest_4253	0.73	-0.3
4,441,114	-		Psest_4253	0.73	-1.4
4,441,114	-		Psest_4253	0.73	+1.2
4,441,114	-		Psest_4253	0.73	+0.3
4,441,114	-		Psest_4253	0.73	-2.5
4,441,114	-		Psest_4253	0.73	+0.8
4,441,114	-		Psest_4253	0.73	+2.2
4,441,114	-		Psest_4253	0.73	-1.4
4,441,114	-		Psest_4253	0.73	-0.3
4,441,114	-		Psest_4253	0.73	-0.3
4,441,114	-		Psest_4253	0.73	-0.3
4,441,114	-		Psest_4253	0.73	-1.6
4,441,114	-		Psest_4253	0.73	-0.8
4,441,115	+		Psest_4253	0.73	-1.4
4,441,115	+		Psest_4253	0.73	+0.3
4,441,125	+		Psest_4253	0.74	-0.9
4,441,125	+		Psest_4253	0.74	-1.7
4,441,125	+		Psest_4253	0.74	-0.9
4,441,125	+		Psest_4253	0.74	-1.6
4,441,126	-		Psest_4253	0.74	-0.5
4,441,126	-		Psest_4253	0.74	-0.3
4,441,126	-		Psest_4253	0.74	+0.6
4,441,227	+		Psest_4253	0.79	-0.3
4,441,227	+		Psest_4253	0.79	-2.0
4,441,359	+		Psest_4253	0.86	-1.7
4,441,531	-				+1.6
4,442,328	+		Psest_4254	0.60	+1.6
4,442,329	-		Psest_4254	0.60	-2.7
4,442,329	-		Psest_4254	0.60	+0.2
4,442,329	-		Psest_4254	0.60	+0.6
4,442,329	-		Psest_4254	0.60	+1.5
4,442,329	-		Psest_4254	0.60	-2.0
4,442,329	-		Psest_4254	0.60	+0.4
4,442,329	-		Psest_4254	0.60	-1.9
4,442,329	-		Psest_4254	0.60	+0.0
4,442,329	-		Psest_4254	0.60	+1.0
4,442,347	-		Psest_4254	0.62	+0.0
4,442,373	+		Psest_4254	0.64	+0.3
4,442,409	+		Psest_4254	0.67	+0.5
4,442,409	+		Psest_4254	0.67	-2.7
4,442,410	-		Psest_4254	0.67	-0.8
4,442,410	-		Psest_4254	0.67	-0.7
4,442,411	-		Psest_4254	0.67	-0.6
4,442,535	+		Psest_4254	0.78	+0.8
4,442,535	+		Psest_4254	0.78	-0.6
4,442,535	+		Psest_4254	0.78	-1.8
4,442,535	+		Psest_4254	0.78	+1.0
4,442,536	-		Psest_4254	0.78	-0.4
4,442,536	-		Psest_4254	0.78	-0.9
4,442,536	-		Psest_4254	0.78	-1.7
4,442,536	-		Psest_4254	0.78	-0.9
4,442,536	-		Psest_4254	0.78	-0.3
4,442,536	-		Psest_4254	0.78	-0.9
4,442,536	-		Psest_4254	0.78	+1.6
4,442,536	-		Psest_4254	0.78	+1.2
4,442,536	-		Psest_4254	0.78	+0.2
4,442,536	-		Psest_4254	0.78	-0.8
4,442,536	-		Psest_4254	0.78	+0.2
4,442,536	-		Psest_4254	0.78	+0.4