Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0922

Experiment: nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 200 mM
1,001,286	+				-0.6
1,001,286	+				+2.2
1,001,286	+				-0.3
1,001,286	+				-0.9
1,001,286	+				-0.3
1,001,286	+				-0.3
1,001,287	-				+0.9
1,001,287	-				+2.2
1,001,289	+				+1.2
1,001,290	-				+0.9
1,001,290	-				+1.3
1,001,290	-				+1.1
1,001,313	+				-1.1
1,001,313	+				-1.6
1,001,313	+				-0.3
1,001,314	-				-1.1
1,001,314	-				-2.5
1,001,495	+		Psest_0921	0.20	+0.1
1,001,495	+		Psest_0921	0.20	+1.6
1,001,495	+		Psest_0921	0.20	+1.3
1,001,495	+		Psest_0921	0.20	+0.0
1,001,495	+		Psest_0921	0.20	+0.8
1,001,496	-		Psest_0921	0.20	-0.5
1,001,496	-		Psest_0921	0.20	+0.9
1,001,496	-		Psest_0921	0.20	-1.9
1,001,496	-		Psest_0921	0.20	-0.3
1,001,496	-		Psest_0921	0.20	+0.0
1,001,496	-		Psest_0921	0.20	+0.6
1,001,496	-		Psest_0921	0.20	-1.6
1,001,499	+		Psest_0921	0.21	+1.6
1,001,500	-		Psest_0921	0.21	+1.2
1,001,500	-		Psest_0921	0.21	+3.5
1,001,971	+		Psest_0921	0.78	+0.7
1,001,971	+		Psest_0921	0.78	-1.8
1,001,972	-		Psest_0921	0.78	-1.7
1,001,989	-		Psest_0921	0.80	-0.8
1,002,099	+				+0.5
1,002,099	+				+0.4
1,002,099	+				-1.9
1,002,100	-				+2.4
1,002,102	+				+2.4
1,002,102	+				+0.1
1,002,102	+				+2.3
1,002,102	+				+0.1
1,002,102	+				-1.9
1,002,103	-				-0.6
1,002,103	-				+0.3
1,002,103	-				+0.9
1,002,103	-				-1.1
1,002,103	-				-1.4
1,002,103	-				+1.2
1,002,103	-				+0.6
1,002,103	-				-0.3
1,002,103	-				+1.8
1,002,106	+				+0.1
1,002,106	+				+1.3
1,002,186	+				+1.0
1,002,186	+				-2.7
1,002,187	-				-0.6
1,002,272	+				-0.2
1,002,273	-				+2.0
1,002,273	-				-0.4
1,002,304	+				-1.0
1,002,304	+				-0.3
1,002,304	+				-2.0
1,002,304	+				-0.2
1,002,305	-				-0.3
1,002,305	-				+2.7
1,002,305	-				-2.6
1,002,308	+				+2.1
1,002,309	-				-2.2
1,002,309	-				+0.6
1,002,390	-		Psest_0922	0.21	-0.8
1,002,520	-		Psest_0922	0.47	+4.0
1,002,617	-		Psest_0922	0.67	+2.9
1,002,708	-		Psest_0922	0.85	+2.0
1,002,752	-				-1.3
1,002,752	-				-1.0
1,002,752	-				+0.2
1,002,752	-				-1.7
1,002,804	+				+0.7
1,002,804	+				-0.1
1,002,804	+				+0.7
1,002,805	-				+0.7
1,002,805	-				+1.3
1,002,814	+				-1.9
1,002,814	+				+2.8
1,002,814	+				-0.6
1,002,814	+				-1.1
1,002,815	-				-1.3
1,002,815	-				-1.1
1,002,815	-				-1.3
1,002,836	+				-0.4
1,002,836	+				+0.0
1,002,836	+				-0.6
1,002,836	+				-0.9
1,002,836	+				-1.6
1,002,837	-				-1.2
1,002,837	-				+2.7
1,002,837	-				+0.2
1,002,837	-				+0.7
1,002,839	-				+1.5
1,002,839	-				+3.7
1,002,839	-				-0.6
1,002,839	-				+0.5
1,002,839	-				+0.7
1,002,986	+		Psest_0923	0.60	-1.3
1,002,986	+		Psest_0923	0.60	-1.1
1,002,986	+		Psest_0923	0.60	+2.0
1,002,986	+		Psest_0923	0.60	+1.3
1,002,986	+		Psest_0923	0.60	+0.0
1,002,986	+		Psest_0923	0.60	-1.7
1,002,986	+		Psest_0923	0.60	+2.2
1,002,986	+		Psest_0923	0.60	+2.2
1,002,986	+		Psest_0923	0.60	+2.2
1,002,986	+		Psest_0923	0.60	+1.0
1,002,986	+		Psest_0923	0.60	-0.5
1,002,986	+		Psest_0923	0.60	-0.3
1,002,986	+		Psest_0923	0.60	+2.7
1,002,987	-		Psest_0923	0.61	+2.4
1,002,987	-		Psest_0923	0.61	-0.4
1,002,987	-		Psest_0923	0.61	-2.3
1,002,987	-		Psest_0923	0.61	-0.6
1,002,987	-		Psest_0923	0.61	+0.6
1,002,987	-		Psest_0923	0.61	-0.9
1,002,987	-		Psest_0923	0.61	-0.6
1,002,987	-		Psest_0923	0.61	+0.8
1,002,987	-		Psest_0923	0.61	+1.9
1,002,987	-		Psest_0923	0.61	-1.7
1,002,987	-		Psest_0923	0.61	+4.0
1,002,987	-		Psest_0923	0.61	-1.3
1,002,987	-		Psest_0923	0.61	+0.2
1,002,987	-		Psest_0923	0.61	+2.9
1,002,987	-		Psest_0923	0.61	-1.2
1,002,987	-		Psest_0923	0.61	-1.2
1,002,987	-		Psest_0923	0.61	-1.1
1,002,987	-		Psest_0923	0.61	-2.5
1,003,051	+		Psest_0923	0.84	+0.3
1,003,089	+				+0.4
1,003,089	+				-0.5
1,003,089	+				-0.2
1,003,089	+				+0.4
1,003,090	-				-0.4
1,003,140	+				+0.9
1,003,169	+				+0.0
1,003,169	+				+2.3
1,003,169	+				-0.3
1,003,169	+				+0.5
1,003,169	+				-0.3
1,003,169	+				-2.3
1,003,169	+				-1.3
1,003,169	+				+0.2
1,003,169	+				-1.2
1,003,169	+				+2.0
1,003,169	+				+0.7
1,003,169	+				-0.3
1,003,169	+				-0.0
1,003,169	+				+1.1
1,003,169	+				+1.0
1,003,169	+				+0.1
1,003,169	+				-1.0
1,003,169	+				+1.0
1,003,169	+				+1.1
1,003,169	+				+1.0
1,003,169	+				+0.9
1,003,169	+				+0.9
1,003,169	+				+0.1
1,003,169	+				-0.4
1,003,169	+				+1.5
1,003,169	+				+1.0
1,003,169	+				-3.1
1,003,169	+				-1.3
1,003,169	+				+0.6
1,003,169	+				-1.5
1,003,169	+				-1.5
1,003,169	+				+0.6
1,003,169	+				+0.3
1,003,169	+				+1.2
1,003,169	+				-1.7
1,003,170	-				+0.7
1,003,170	-				+0.1
1,003,170	-				+1.2
1,003,170	-				-0.3
1,003,170	-				+0.1
1,003,170	-				-0.8
1,003,170	-				-1.5
1,003,170	-				+2.6
1,003,170	-				-0.1
1,003,170	-				-1.7
1,003,170	-				+0.4
1,003,170	-				+1.1
1,003,170	-				+1.8
1,003,170	-				-2.5
1,003,170	-				+0.7
1,003,170	-				-0.6
1,003,170	-				+1.3
1,003,170	-				+0.9
1,003,170	-				+1.1
1,003,170	-				+1.3
1,003,170	-				+0.6
1,003,170	-				+1.7
1,003,170	-				+0.8
1,003,170	-				+0.9
1,003,170	-				+1.6
1,003,170	-				-0.1
1,003,170	-				-0.9
1,003,170	-				+1.0
1,003,170	-				+0.1
1,003,170	-				+0.8
1,003,170	-				-1.1
1,003,170	-				-0.6
1,003,170	-				-1.4
1,003,170	-				+0.9
1,003,170	-				+0.2
1,003,170	-				+1.6
1,003,170	-				-0.8
1,003,170	-				+2.4
1,003,170	-				+2.2
1,003,198	+				+0.0
1,003,199	-				-1.6
1,003,424	+				-1.2
1,003,471	+				+0.5
1,003,517	+				+1.3
1,003,581	+				+2.6
1,003,582	-				+0.1
1,003,582	-				+6.3
1,003,640	+				+0.2
1,003,640	+				-1.2
1,003,646	+				-2.6
1,003,688	-		Psest_0925	0.11	+1.1
1,003,693	-		Psest_0925	0.13	-0.3
1,003,693	-		Psest_0925	0.13	+1.3
1,003,775	+		Psest_0925	0.41	-0.4
1,003,776	-		Psest_0925	0.42	+0.7
1,003,776	-		Psest_0925	0.42	+2.7
1,003,776	-		Psest_0925	0.42	+0.4