Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0668

Experiment: nitrate 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0667 and Psest_0668 are separated by 6 nucleotidesPsest_0668 and Psest_0669 are separated by 85 nucleotides Psest_0667: Psest_0667 - Phosphodiesterase/alkaline phosphatase D, at 726,330 to 727,883 _0667 Psest_0668: Psest_0668 - Ethanolamine ammonia-lyase, small subunit, at 727,890 to 728,684 _0668 Psest_0669: Psest_0669 - Ethanolamine ammonia-lyase, large subunit, at 728,770 to 730,161 _0669 Position (kb) 727 728 729Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 726.996 kb on + strand, within Psest_0667at 726.996 kb on + strand, within Psest_0667at 726.997 kb on - strand, within Psest_0667at 727.002 kb on + strand, within Psest_0667at 727.224 kb on + strand, within Psest_0667at 727.225 kb on - strand, within Psest_0667at 727.239 kb on + strand, within Psest_0667at 727.239 kb on + strand, within Psest_0667at 727.302 kb on - strand, within Psest_0667at 727.334 kb on - strand, within Psest_0667at 727.334 kb on - strand, within Psest_0667at 727.334 kb on - strand, within Psest_0667at 727.334 kb on - strand, within Psest_0667at 727.334 kb on - strand, within Psest_0667at 727.579 kb on - strand, within Psest_0667at 727.593 kb on + strand, within Psest_0667at 727.594 kb on - strand, within Psest_0667at 727.594 kb on - strand, within Psest_0667at 727.596 kb on + strand, within Psest_0667at 727.596 kb on + strand, within Psest_0667at 727.597 kb on - strand, within Psest_0667at 727.597 kb on - strand, within Psest_0667at 727.597 kb on - strand, within Psest_0667at 727.617 kb on + strand, within Psest_0667at 727.617 kb on + strand, within Psest_0667at 727.817 kb on - strandat 727.817 kb on - strandat 727.849 kb on - strandat 727.938 kb on + strandat 727.962 kb on + strandat 728.002 kb on + strand, within Psest_0668at 728.002 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.029 kb on + strand, within Psest_0668at 728.030 kb on - strand, within Psest_0668at 728.030 kb on - strand, within Psest_0668at 728.030 kb on - strand, within Psest_0668at 728.110 kb on + strand, within Psest_0668at 728.110 kb on + strand, within Psest_0668at 728.110 kb on + strand, within Psest_0668at 728.110 kb on + strand, within Psest_0668at 728.111 kb on - strand, within Psest_0668at 728.111 kb on - strand, within Psest_0668at 728.111 kb on - strand, within Psest_0668at 728.111 kb on - strand, within Psest_0668at 728.111 kb on - strand, within Psest_0668at 728.434 kb on + strand, within Psest_0668at 728.434 kb on + strand, within Psest_0668at 728.434 kb on + strand, within Psest_0668at 728.434 kb on + strand, within Psest_0668at 728.435 kb on - strandat 728.483 kb on + strand, within Psest_0668at 728.483 kb on + strand, within Psest_0668at 728.483 kb on + strand, within Psest_0668at 728.484 kb on - strand, within Psest_0668at 728.484 kb on - strand, within Psest_0668at 728.688 kb on + strandat 728.918 kb on + strand, within Psest_0669at 728.918 kb on + strand, within Psest_0669at 728.918 kb on + strand, within Psest_0669at 728.918 kb on + strand, within Psest_0669at 728.918 kb on + strand, within Psest_0669at 728.918 kb on + strand, within Psest_0669at 728.919 kb on - strand, within Psest_0669at 728.919 kb on - strand, within Psest_0669at 728.919 kb on - strand, within Psest_0669at 728.919 kb on - strand, within Psest_0669at 728.919 kb on - strand, within Psest_0669at 728.948 kb on + strand, within Psest_0669at 729.066 kb on - strand, within Psest_0669at 729.066 kb on - strand, within Psest_0669at 729.152 kb on + strand, within Psest_0669at 729.152 kb on + strand, within Psest_0669at 729.153 kb on - strand, within Psest_0669at 729.158 kb on + strand, within Psest_0669at 729.158 kb on + strand, within Psest_0669at 729.158 kb on + strand, within Psest_0669at 729.158 kb on + strand, within Psest_0669at 729.159 kb on - strand, within Psest_0669at 729.206 kb on + strand, within Psest_0669at 729.206 kb on + strand, within Psest_0669at 729.206 kb on + strand, within Psest_0669at 729.206 kb on + strand, within Psest_0669at 729.207 kb on - strand, within Psest_0669at 729.207 kb on - strand, within Psest_0669at 729.207 kb on - strand, within Psest_0669at 729.224 kb on + strand, within Psest_0669at 729.305 kb on + strand, within Psest_0669at 729.305 kb on + strand, within Psest_0669at 729.306 kb on - strand, within Psest_0669at 729.357 kb on - strand, within Psest_0669at 729.357 kb on - strand, within Psest_0669

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 200 mM
remove
726,996 + Psest_0667 0.43 -0.1
726,996 + Psest_0667 0.43 +1.4
726,997 - Psest_0667 0.43 -1.4
727,002 + Psest_0667 0.43 -1.5
727,224 + Psest_0667 0.58 +0.4
727,225 - Psest_0667 0.58 +3.2
727,239 + Psest_0667 0.58 -1.1
727,239 + Psest_0667 0.58 -1.0
727,302 - Psest_0667 0.63 +1.3
727,334 - Psest_0667 0.65 +0.8
727,334 - Psest_0667 0.65 +1.2
727,334 - Psest_0667 0.65 -2.5
727,334 - Psest_0667 0.65 -1.2
727,334 - Psest_0667 0.65 +0.3
727,579 - Psest_0667 0.80 -0.7
727,593 + Psest_0667 0.81 +1.7
727,594 - Psest_0667 0.81 -1.1
727,594 - Psest_0667 0.81 +2.9
727,596 + Psest_0667 0.81 -0.1
727,596 + Psest_0667 0.81 -0.3
727,597 - Psest_0667 0.82 +2.1
727,597 - Psest_0667 0.82 +1.0
727,597 - Psest_0667 0.82 -1.2
727,617 + Psest_0667 0.83 +2.0
727,617 + Psest_0667 0.83 -1.5
727,817 - -0.0
727,817 - +0.3
727,849 - +2.3
727,938 + -0.9
727,962 + -1.4
728,002 + Psest_0668 0.14 -2.2
728,002 + Psest_0668 0.14 +1.4
728,029 + Psest_0668 0.17 -1.1
728,029 + Psest_0668 0.17 +0.3
728,029 + Psest_0668 0.17 -0.7
728,029 + Psest_0668 0.17 -0.6
728,029 + Psest_0668 0.17 -0.8
728,029 + Psest_0668 0.17 -0.5
728,029 + Psest_0668 0.17 +1.1
728,030 - Psest_0668 0.18 +0.1
728,030 - Psest_0668 0.18 -1.6
728,030 - Psest_0668 0.18 +0.8
728,110 + Psest_0668 0.28 -3.0
728,110 + Psest_0668 0.28 -0.1
728,110 + Psest_0668 0.28 -0.4
728,110 + Psest_0668 0.28 +0.6
728,111 - Psest_0668 0.28 +0.6
728,111 - Psest_0668 0.28 -0.2
728,111 - Psest_0668 0.28 +1.8
728,111 - Psest_0668 0.28 +0.8
728,111 - Psest_0668 0.28 -1.0
728,434 + Psest_0668 0.68 -2.3
728,434 + Psest_0668 0.68 -1.3
728,434 + Psest_0668 0.68 -1.2
728,434 + Psest_0668 0.68 +0.2
728,435 - +0.1
728,483 + Psest_0668 0.75 +0.8
728,483 + Psest_0668 0.75 -2.0
728,483 + Psest_0668 0.75 -1.5
728,484 - Psest_0668 0.75 -0.5
728,484 - Psest_0668 0.75 -0.6
728,688 + +1.2
728,918 + Psest_0669 0.11 +1.5
728,918 + Psest_0669 0.11 +1.1
728,918 + Psest_0669 0.11 +0.7
728,918 + Psest_0669 0.11 -1.0
728,918 + Psest_0669 0.11 -0.6
728,918 + Psest_0669 0.11 +0.6
728,919 - Psest_0669 0.11 +1.6
728,919 - Psest_0669 0.11 +1.7
728,919 - Psest_0669 0.11 +1.3
728,919 - Psest_0669 0.11 +1.5
728,919 - Psest_0669 0.11 +1.9
728,948 + Psest_0669 0.13 +0.3
729,066 - Psest_0669 0.21 -1.3
729,066 - Psest_0669 0.21 -0.6
729,152 + Psest_0669 0.27 -0.7
729,152 + Psest_0669 0.27 +2.7
729,153 - Psest_0669 0.28 +0.8
729,158 + Psest_0669 0.28 +1.5
729,158 + Psest_0669 0.28 -1.1
729,158 + Psest_0669 0.28 +0.6
729,158 + Psest_0669 0.28 -1.8
729,159 - Psest_0669 0.28 -1.7
729,206 + Psest_0669 0.31 +3.0
729,206 + Psest_0669 0.31 +1.2
729,206 + Psest_0669 0.31 -0.5
729,206 + Psest_0669 0.31 +2.0
729,207 - Psest_0669 0.31 +1.9
729,207 - Psest_0669 0.31 +0.2
729,207 - Psest_0669 0.31 +0.1
729,224 + Psest_0669 0.33 -2.5
729,305 + Psest_0669 0.38 -1.1
729,305 + Psest_0669 0.38 -0.5
729,306 - Psest_0669 0.39 -0.9
729,357 - Psest_0669 0.42 +2.5
729,357 - Psest_0669 0.42 +0.7

Or see this region's nucleotide sequence