Experiment: nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0558 and Psest_0559 overlap by 4 nucleotides Psest_0559 and Psest_0560 are separated by 1 nucleotides Psest_0560 and Psest_0561 are separated by 131 nucleotides Psest_0561 and Psest_0562 are separated by 204 nucleotides
Psest_0558: Psest_0558 - urease, beta subunit, at 612,910 to 613,215
_0558
Psest_0559: Psest_0559 - Sortase and related acyltransferases, at 613,212 to 613,775
_0559
Psest_0560: Psest_0560 - Urease (EC 3.5.1.5) <small>(from data)</small>, at 613,777 to 614,079
_0560
Psest_0561: Psest_0561 - Urease accessory protein UreH, at 614,211 to 615,044
_0561
Psest_0562: Psest_0562 - magnesium-translocating P-type ATPase, at 615,249 to 618,797
_0562
Position (kb) 614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 613.331 kb on + strand, within Psest_0559 at 613.331 kb on + strand, within Psest_0559 at 613.332 kb on - strand, within Psest_0559 at 613.332 kb on - strand, within Psest_0559 at 613.462 kb on + strand, within Psest_0559 at 613.462 kb on + strand, within Psest_0559 at 613.463 kb on - strand, within Psest_0559 at 613.526 kb on - strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.669 kb on + strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.670 kb on - strand, within Psest_0559 at 613.673 kb on + strand, within Psest_0559 at 613.673 kb on + strand, within Psest_0559 at 613.673 kb on + strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.674 kb on - strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.713 kb on + strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.714 kb on - strand, within Psest_0559 at 613.759 kb on + strand at 613.904 kb on + strand, within Psest_0560 at 613.966 kb on - strand, within Psest_0560 at 613.966 kb on - strand, within Psest_0560 at 613.966 kb on - strand, within Psest_0560 at 613.966 kb on - strand, within Psest_0560 at 613.966 kb on - strand, within Psest_0560 at 613.966 kb on - strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.967 kb on + strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.968 kb on - strand, within Psest_0560 at 613.986 kb on - strand, within Psest_0560 at 614.094 kb on + strand at 614.216 kb on + strand at 614.277 kb on + strand at 614.278 kb on - strand at 614.278 kb on - strand at 614.278 kb on - strand at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.410 kb on + strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.411 kb on - strand, within Psest_0561 at 614.617 kb on + strand, within Psest_0561 at 614.617 kb on + strand, within Psest_0561 at 614.618 kb on - strand, within Psest_0561 at 614.618 kb on - strand, within Psest_0561 at 614.680 kb on + strand, within Psest_0561 at 614.681 kb on - strand, within Psest_0561 at 614.681 kb on - strand, within Psest_0561 at 614.750 kb on - strand, within Psest_0561 at 614.834 kb on + strand, within Psest_0561 at 614.912 kb on - strand, within Psest_0561 at 615.061 kb on + strand at 615.083 kb on + strand at 615.144 kb on - strand at 615.144 kb on - strand at 615.144 kb on - strand at 615.190 kb on + strand at 615.214 kb on + strand at 615.214 kb on + strand at 615.316 kb on + strand at 615.316 kb on + strand at 615.316 kb on + strand at 615.317 kb on - strand at 615.317 kb on - strand at 615.397 kb on + strand at 615.398 kb on - strand at 615.470 kb on - strand at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.847 kb on + strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.848 kb on - strand, within Psest_0562 at 615.869 kb on + strand, within Psest_0562
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 200 mM remove 613,331 + Psest_0559 0.21 +2.1 613,331 + Psest_0559 0.21 +3.1 613,332 - Psest_0559 0.21 +0.4 613,332 - Psest_0559 0.21 -2.5 613,462 + Psest_0559 0.44 +3.2 613,462 + Psest_0559 0.44 -0.2 613,463 - Psest_0559 0.45 +0.3 613,526 - Psest_0559 0.56 +2.8 613,669 + Psest_0559 0.81 +1.4 613,669 + Psest_0559 0.81 -0.9 613,669 + Psest_0559 0.81 +0.7 613,669 + Psest_0559 0.81 -1.5 613,669 + Psest_0559 0.81 -0.6 613,669 + Psest_0559 0.81 -1.0 613,670 - Psest_0559 0.81 +0.5 613,670 - Psest_0559 0.81 -0.2 613,670 - Psest_0559 0.81 -0.6 613,670 - Psest_0559 0.81 -0.4 613,670 - Psest_0559 0.81 -0.8 613,670 - Psest_0559 0.81 +0.2 613,670 - Psest_0559 0.81 -0.1 613,670 - Psest_0559 0.81 +0.6 613,673 + Psest_0559 0.82 -2.8 613,673 + Psest_0559 0.82 -2.1 613,673 + Psest_0559 0.82 -1.4 613,674 - Psest_0559 0.82 +1.4 613,674 - Psest_0559 0.82 -1.2 613,674 - Psest_0559 0.82 -2.4 613,674 - Psest_0559 0.82 -0.2 613,674 - Psest_0559 0.82 -1.0 613,713 + Psest_0559 0.89 +2.5 613,713 + Psest_0559 0.89 -0.5 613,713 + Psest_0559 0.89 -2.6 613,713 + Psest_0559 0.89 -0.3 613,713 + Psest_0559 0.89 +0.7 613,713 + Psest_0559 0.89 +0.4 613,714 - Psest_0559 0.89 -0.2 613,714 - Psest_0559 0.89 -1.9 613,714 - Psest_0559 0.89 +0.9 613,714 - Psest_0559 0.89 -0.4 613,714 - Psest_0559 0.89 -0.8 613,714 - Psest_0559 0.89 +1.3 613,714 - Psest_0559 0.89 -0.6 613,714 - Psest_0559 0.89 -0.2 613,759 + +0.8 613,904 + Psest_0560 0.42 -0.0 613,966 - Psest_0560 0.62 +1.6 613,966 - Psest_0560 0.62 -0.6 613,966 - Psest_0560 0.62 -1.8 613,966 - Psest_0560 0.62 -0.8 613,966 - Psest_0560 0.62 -0.3 613,966 - Psest_0560 0.62 -0.4 613,967 + Psest_0560 0.63 -0.7 613,967 + Psest_0560 0.63 -0.1 613,967 + Psest_0560 0.63 -2.0 613,967 + Psest_0560 0.63 -2.3 613,967 + Psest_0560 0.63 -1.7 613,967 + Psest_0560 0.63 -0.8 613,967 + Psest_0560 0.63 -1.8 613,967 + Psest_0560 0.63 +0.9 613,967 + Psest_0560 0.63 -1.5 613,967 + Psest_0560 0.63 -3.3 613,967 + Psest_0560 0.63 +1.9 613,967 + Psest_0560 0.63 -0.1 613,967 + Psest_0560 0.63 +1.4 613,968 - Psest_0560 0.63 -3.4 613,968 - Psest_0560 0.63 -1.3 613,968 - Psest_0560 0.63 +1.3 613,968 - Psest_0560 0.63 -0.5 613,968 - Psest_0560 0.63 -0.9 613,968 - Psest_0560 0.63 +1.0 613,968 - Psest_0560 0.63 -0.9 613,968 - Psest_0560 0.63 +1.0 613,968 - Psest_0560 0.63 -0.1 613,968 - Psest_0560 0.63 -2.7 613,968 - Psest_0560 0.63 -0.1 613,986 - Psest_0560 0.69 -0.8 614,094 + +2.2 614,216 + +2.5 614,277 + -1.9 614,278 - +0.9 614,278 - -0.7 614,278 - -0.9 614,410 + Psest_0561 0.24 +1.2 614,410 + Psest_0561 0.24 -0.5 614,410 + Psest_0561 0.24 +0.2 614,410 + Psest_0561 0.24 +0.1 614,410 + Psest_0561 0.24 -0.3 614,410 + Psest_0561 0.24 -0.2 614,410 + Psest_0561 0.24 -2.2 614,410 + Psest_0561 0.24 +1.9 614,410 + Psest_0561 0.24 +0.1 614,410 + Psest_0561 0.24 -0.8 614,410 + Psest_0561 0.24 +2.1 614,411 - Psest_0561 0.24 +0.4 614,411 - Psest_0561 0.24 -2.8 614,411 - Psest_0561 0.24 +2.2 614,411 - Psest_0561 0.24 -0.8 614,411 - Psest_0561 0.24 +3.1 614,411 - Psest_0561 0.24 +3.2 614,411 - Psest_0561 0.24 +0.6 614,411 - Psest_0561 0.24 -2.7 614,411 - Psest_0561 0.24 +2.0 614,411 - Psest_0561 0.24 +0.9 614,411 - Psest_0561 0.24 -0.2 614,411 - Psest_0561 0.24 -0.5 614,411 - Psest_0561 0.24 -0.1 614,617 + Psest_0561 0.49 +2.9 614,617 + Psest_0561 0.49 +2.3 614,618 - Psest_0561 0.49 -0.5 614,618 - Psest_0561 0.49 -0.8 614,680 + Psest_0561 0.56 +1.6 614,681 - Psest_0561 0.56 +0.9 614,681 - Psest_0561 0.56 +0.6 614,750 - Psest_0561 0.65 -1.4 614,834 + Psest_0561 0.75 +1.6 614,912 - Psest_0561 0.84 +0.3 615,061 + -0.7 615,083 + -1.1 615,144 - -0.4 615,144 - -1.2 615,144 - +1.7 615,190 + +0.3 615,214 + -0.0 615,214 + +1.1 615,316 + -0.2 615,316 + -0.8 615,316 + -2.6 615,317 - +0.4 615,317 - +0.8 615,397 + -2.2 615,398 - -1.1 615,470 - +0.8 615,847 + Psest_0562 0.17 -1.8 615,847 + Psest_0562 0.17 -1.4 615,847 + Psest_0562 0.17 +1.3 615,847 + Psest_0562 0.17 +1.4 615,847 + Psest_0562 0.17 +0.1 615,847 + Psest_0562 0.17 +1.1 615,847 + Psest_0562 0.17 -0.8 615,847 + Psest_0562 0.17 -2.5 615,847 + Psest_0562 0.17 +0.8 615,847 + Psest_0562 0.17 -1.2 615,847 + Psest_0562 0.17 +1.5 615,847 + Psest_0562 0.17 -1.0 615,847 + Psest_0562 0.17 +0.8 615,848 - Psest_0562 0.17 -0.8 615,848 - Psest_0562 0.17 -2.2 615,848 - Psest_0562 0.17 +1.6 615,848 - Psest_0562 0.17 +0.7 615,848 - Psest_0562 0.17 -1.4 615,848 - Psest_0562 0.17 +0.1 615,848 - Psest_0562 0.17 -1.2 615,848 - Psest_0562 0.17 +0.7 615,848 - Psest_0562 0.17 -1.9 615,848 - Psest_0562 0.17 -0.2 615,869 + Psest_0562 0.17 +0.3
Or see this region's nucleotide sequence