Experiment: nitrite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0022 and Psest_0023 are separated by 55 nucleotides Psest_0023 and Psest_0024 are separated by 148 nucleotides Psest_0024 and Psest_0025 are separated by 87 nucleotides
Psest_0022: Psest_0022 - methionyl-tRNA formyltransferase, at 23,022 to 23,966
_0022
Psest_0023: Psest_0023 - peptide deformylase, at 24,022 to 24,528
_0023
Psest_0024: Psest_0024 - LysM domain., at 24,677 to 25,702
_0024
Psest_0025: Psest_0025 - DNA protecting protein DprA, at 25,790 to 26,887
_0025
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 24.529 kb on - strand at 24.529 kb on - strand at 24.555 kb on - strand at 24.555 kb on - strand at 24.574 kb on - strand at 24.574 kb on - strand at 24.574 kb on - strand at 24.659 kb on - strand at 24.659 kb on - strand at 24.659 kb on - strand at 24.659 kb on - strand at 24.659 kb on - strand at 24.662 kb on - strand at 24.662 kb on - strand at 24.662 kb on - strand at 24.768 kb on - strand at 24.769 kb on + strand at 24.769 kb on + strand at 24.769 kb on + strand at 24.769 kb on + strand at 24.884 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.911 kb on + strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.912 kb on - strand, within Psest_0024 at 24.936 kb on + strand, within Psest_0024 at 24.937 kb on - strand, within Psest_0024 at 24.988 kb on + strand, within Psest_0024 at 24.988 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.097 kb on + strand, within Psest_0024 at 25.098 kb on - strand, within Psest_0024 at 25.098 kb on - strand, within Psest_0024 at 25.151 kb on + strand, within Psest_0024 at 25.151 kb on + strand, within Psest_0024 at 25.152 kb on - strand, within Psest_0024 at 25.152 kb on - strand, within Psest_0024 at 25.214 kb on + strand, within Psest_0024 at 25.214 kb on + strand, within Psest_0024 at 25.214 kb on + strand, within Psest_0024 at 25.214 kb on + strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.215 kb on - strand, within Psest_0024 at 25.532 kb on + strand, within Psest_0024 at 25.532 kb on + strand, within Psest_0024 at 25.533 kb on - strand, within Psest_0024 at 25.625 kb on + strand at 25.625 kb on + strand at 25.625 kb on + strand at 25.625 kb on + strand at 25.640 kb on + strand at 25.640 kb on + strand at 25.641 kb on - strand at 25.766 kb on + strand at 25.766 kb on + strand at 25.767 kb on - strand at 25.767 kb on - strand at 25.781 kb on + strand at 26.060 kb on + strand, within Psest_0025 at 26.434 kb on + strand, within Psest_0025 at 26.435 kb on - strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.558 kb on + strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025 at 26.559 kb on - strand, within Psest_0025
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 2.5 mM remove 24,529 - -1.6 24,529 - +1.3 24,555 - +0.9 24,555 - +0.1 24,574 - +0.9 24,574 - -0.4 24,574 - +1.9 24,659 - +0.7 24,659 - -0.0 24,659 - -0.5 24,659 - +0.7 24,659 - -1.1 24,662 - -3.7 24,662 - -1.4 24,662 - -2.2 24,768 - -1.7 24,769 + -2.2 24,769 + -0.4 24,769 + -0.4 24,769 + +0.4 24,884 + Psest_0024 0.20 -1.0 24,911 + Psest_0024 0.23 -0.3 24,911 + Psest_0024 0.23 +0.1 24,911 + Psest_0024 0.23 +1.3 24,911 + Psest_0024 0.23 +0.7 24,911 + Psest_0024 0.23 +0.9 24,911 + Psest_0024 0.23 +1.3 24,911 + Psest_0024 0.23 -1.2 24,911 + Psest_0024 0.23 +1.0 24,911 + Psest_0024 0.23 -1.7 24,911 + Psest_0024 0.23 -0.5 24,911 + Psest_0024 0.23 +0.2 24,912 - Psest_0024 0.23 -0.7 24,912 - Psest_0024 0.23 +0.5 24,912 - Psest_0024 0.23 +1.1 24,912 - Psest_0024 0.23 +0.9 24,912 - Psest_0024 0.23 -0.2 24,912 - Psest_0024 0.23 +2.2 24,912 - Psest_0024 0.23 -0.1 24,912 - Psest_0024 0.23 +0.4 24,912 - Psest_0024 0.23 -1.3 24,912 - Psest_0024 0.23 +0.7 24,912 - Psest_0024 0.23 -1.1 24,912 - Psest_0024 0.23 +1.0 24,936 + Psest_0024 0.25 -0.7 24,937 - Psest_0024 0.25 +1.2 24,988 + Psest_0024 0.30 -1.1 24,988 + Psest_0024 0.30 +2.5 25,097 + Psest_0024 0.41 +0.5 25,097 + Psest_0024 0.41 +1.5 25,097 + Psest_0024 0.41 +3.4 25,097 + Psest_0024 0.41 +1.0 25,097 + Psest_0024 0.41 -1.2 25,098 - Psest_0024 0.41 -0.2 25,098 - Psest_0024 0.41 +1.5 25,151 + Psest_0024 0.46 +2.0 25,151 + Psest_0024 0.46 -0.7 25,152 - Psest_0024 0.46 +1.6 25,152 - Psest_0024 0.46 +0.3 25,214 + Psest_0024 0.52 -0.1 25,214 + Psest_0024 0.52 +0.2 25,214 + Psest_0024 0.52 +0.1 25,214 + Psest_0024 0.52 +1.1 25,215 - Psest_0024 0.52 -0.8 25,215 - Psest_0024 0.52 -1.0 25,215 - Psest_0024 0.52 +1.2 25,215 - Psest_0024 0.52 +0.6 25,215 - Psest_0024 0.52 -0.2 25,215 - Psest_0024 0.52 -1.4 25,215 - Psest_0024 0.52 +1.7 25,532 + Psest_0024 0.83 +1.1 25,532 + Psest_0024 0.83 +0.1 25,533 - Psest_0024 0.83 +0.0 25,625 + +0.9 25,625 + +0.2 25,625 + +1.6 25,625 + -0.7 25,640 + +0.5 25,640 + -1.4 25,641 - +0.1 25,766 + -0.2 25,766 + -0.4 25,767 - +0.3 25,767 - -0.7 25,781 + +0.5 26,060 + Psest_0025 0.25 +0.3 26,434 + Psest_0025 0.59 +0.3 26,435 - Psest_0025 0.59 -2.5 26,558 + Psest_0025 0.70 -1.4 26,558 + Psest_0025 0.70 +0.9 26,558 + Psest_0025 0.70 +2.7 26,558 + Psest_0025 0.70 +0.1 26,558 + Psest_0025 0.70 +0.2 26,558 + Psest_0025 0.70 +0.4 26,558 + Psest_0025 0.70 -0.5 26,559 - Psest_0025 0.70 -0.5 26,559 - Psest_0025 0.70 -0.0 26,559 - Psest_0025 0.70 -0.0 26,559 - Psest_0025 0.70 -0.5 26,559 - Psest_0025 0.70 -1.2
Or see this region's nucleotide sequence