Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07515

Experiment: H2 N-free with 10mM L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07500 and MMP_RS07505 are separated by 4 nucleotidesMMP_RS07505 and MMP_RS07510 are separated by 15 nucleotidesMMP_RS07510 and MMP_RS07515 are separated by 22 nucleotidesMMP_RS07515 and MMP_RS07520 are separated by 14 nucleotides MMP_RS07500: MMP_RS07500 - hypothetical protein, at 1,422,581 to 1,422,832 _RS07500 MMP_RS07505: MMP_RS07505 - DUF2104 domain-containing protein, at 1,422,837 to 1,423,136 _RS07505 MMP_RS07510: MMP_RS07510 - DUF1959 domain-containing protein, at 1,423,152 to 1,423,562 _RS07510 MMP_RS07515: MMP_RS07515 - NADH-quinone oxidoreductase subunit B family protein, at 1,423,585 to 1,424,055 _RS07515 MMP_RS07520: MMP_RS07520 - nickel-dependent hydrogenase large subunit, at 1,424,070 to 1,425,197 _RS07520 Position (kb) 1423 1424 1425Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1422.591 kb on + strandat 1422.809 kb on - strandat 1422.969 kb on + strandat 1423.108 kb on + strandat 1423.130 kb on + strandat 1423.560 kb on - strandat 1423.561 kb on + strandat 1423.881 kb on - strandat 1424.077 kb on - strandat 1424.179 kb on + strandat 1424.268 kb on - strandat 1424.268 kb on - strandat 1424.345 kb on + strandat 1424.463 kb on + strandat 1424.543 kb on + strandat 1424.946 kb on - strandat 1424.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Arginine
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1,422,591 + -3.7
1,422,809 - -4.5
1,422,969 + -5.2
1,423,108 + -4.4
1,423,130 + -2.5
1,423,560 - -2.8
1,423,561 + -3.1
1,423,881 - -1.8
1,424,077 - -2.7
1,424,179 + -4.4
1,424,268 - -2.3
1,424,268 - -4.6
1,424,345 + -3.1
1,424,463 + -5.2
1,424,543 + -3.6
1,424,946 - -4.9
1,424,973 - -3.5

Or see this region's nucleotide sequence