Strain Fitness in Pantoea sp. MT58 around IAI47_13885

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
2,938,644	+				-0.6
2,938,669	+				+0.3
2,938,669	+				+0.3
2,938,670	-				+0.7
2,938,682	+				+1.0
2,938,705	-				-3.3
2,938,735	-				-1.3
2,938,752	+				-2.3
2,938,774	+				-1.3
2,938,774	+				-2.1
2,938,774	+				-1.6
2,938,774	+				-2.0
2,938,774	+				-2.4
2,938,774	+				-3.8
2,938,774	+				-0.6
2,938,774	+				-2.0
2,938,774	+				-1.0
2,938,775	-				-2.3
2,938,775	-				-2.6
2,938,775	-				-1.6
2,938,777	+				-1.8
2,938,780	+				-1.3
2,938,798	+		IAI47_13880	0.10	-2.1
2,938,813	+		IAI47_13880	0.12	-4.2
2,938,813	+		IAI47_13880	0.12	-2.0
2,938,814	-		IAI47_13880	0.12	-1.0
2,938,814	-		IAI47_13880	0.12	-1.6
2,938,862	+		IAI47_13880	0.18	-0.3
2,938,862	+		IAI47_13880	0.18	-3.3
2,938,863	-		IAI47_13880	0.18	-2.1
2,938,863	-		IAI47_13880	0.18	-1.0
2,938,863	-		IAI47_13880	0.18	-3.2
2,938,863	-		IAI47_13880	0.18	-0.6
2,938,885	+		IAI47_13880	0.21	-2.4
2,938,886	-		IAI47_13880	0.21	-2.3
2,938,906	+		IAI47_13880	0.23	-1.6
2,938,906	+		IAI47_13880	0.23	-2.6
2,938,907	-		IAI47_13880	0.24	+0.0
2,938,907	-		IAI47_13880	0.24	-1.3
2,938,907	-		IAI47_13880	0.24	+0.0
2,938,907	-		IAI47_13880	0.24	+1.0
2,938,907	-		IAI47_13880	0.24	-1.6
2,938,907	-		IAI47_13880	0.24	-0.6
2,938,928	-		IAI47_13880	0.26	-1.3
2,938,937	+		IAI47_13880	0.27	+0.0
2,938,937	+		IAI47_13880	0.27	-0.6
2,938,937	+		IAI47_13880	0.27	-2.0
2,938,937	+		IAI47_13880	0.27	-3.4
2,938,937	+		IAI47_13880	0.27	-2.0
2,938,937	+		IAI47_13880	0.27	-2.3
2,938,937	+		IAI47_13880	0.27	-0.6
2,938,937	+		IAI47_13880	0.27	-0.6
2,938,938	-		IAI47_13880	0.27	-3.0
2,938,938	-		IAI47_13880	0.27	-2.0
2,938,938	-		IAI47_13880	0.27	-3.6
2,938,938	-		IAI47_13880	0.27	-1.3
2,938,970	+		IAI47_13880	0.31	-1.0
2,938,970	+		IAI47_13880	0.31	-1.3
2,938,970	+		IAI47_13880	0.31	-2.8
2,938,981	+		IAI47_13880	0.33	-3.8
2,938,981	+		IAI47_13880	0.33	-3.3
2,938,981	+		IAI47_13880	0.33	-3.4
2,938,981	+		IAI47_13880	0.33	-1.6
2,938,982	-		IAI47_13880	0.33	-1.9
2,938,982	-		IAI47_13880	0.33	-3.1
2,938,982	-		IAI47_13880	0.33	-2.6
2,938,982	-		IAI47_13880	0.33	-2.8
2,938,982	-		IAI47_13880	0.33	-3.1
2,938,986	-		IAI47_13880	0.33	-3.7
2,939,012	-		IAI47_13880	0.37	-3.0
2,939,012	-		IAI47_13880	0.37	+1.0
2,939,026	+		IAI47_13880	0.38	-2.8
2,939,027	-		IAI47_13880	0.39	-3.0
2,939,044	+		IAI47_13880	0.41	-2.7
2,939,044	+		IAI47_13880	0.41	-2.1
2,939,045	-		IAI47_13880	0.41	-0.6
2,939,079	-		IAI47_13880	0.45	-3.1
2,939,194	+		IAI47_13880	0.59	-3.8
2,939,263	+		IAI47_13880	0.68	+1.0
2,939,263	+		IAI47_13880	0.68	-4.1
2,939,263	+		IAI47_13880	0.68	-3.1
2,939,263	+		IAI47_13880	0.68	-0.6
2,939,263	+		IAI47_13880	0.68	-2.3
2,939,263	+		IAI47_13880	0.68	-2.3
2,939,263	+		IAI47_13880	0.68	-3.4
2,939,263	+		IAI47_13880	0.68	-3.1
2,939,263	+		IAI47_13880	0.68	-0.6
2,939,264	-		IAI47_13880	0.68	-2.0
2,939,264	-		IAI47_13880	0.68	-0.6
2,939,267	+		IAI47_13880	0.69	-1.8
2,939,267	+		IAI47_13880	0.69	-3.5
2,939,267	+		IAI47_13880	0.69	-1.6
2,939,267	+		IAI47_13880	0.69	-4.6
2,939,267	+		IAI47_13880	0.69	-3.2
2,939,268	-		IAI47_13880	0.69	+0.0
2,939,268	-		IAI47_13880	0.69	-1.8
2,939,268	-		IAI47_13880	0.69	+0.0
2,939,268	-		IAI47_13880	0.69	-2.6
2,939,268	-		IAI47_13880	0.69	-3.6
2,939,268	-		IAI47_13880	0.69	+1.0
2,939,275	+		IAI47_13880	0.70	-1.8
2,939,276	-		IAI47_13880	0.70	-2.3
2,939,291	-		IAI47_13880	0.72	-2.9
2,939,338	+		IAI47_13880	0.77	-3.0
2,939,338	+		IAI47_13880	0.77	-4.1
2,939,339	-		IAI47_13880	0.78	-1.3
2,939,339	-		IAI47_13880	0.78	-1.3
2,939,383	+		IAI47_13880	0.83	-3.5
2,939,383	+		IAI47_13880	0.83	-2.0
2,939,383	+		IAI47_13880	0.83	-3.6
2,939,383	+		IAI47_13880	0.83	-1.8
2,939,383	+		IAI47_13880	0.83	-3.4
2,939,383	+		IAI47_13880	0.83	-2.7
2,939,383	+		IAI47_13880	0.83	-3.8
2,939,383	+		IAI47_13880	0.83	-1.8
2,939,383	+		IAI47_13880	0.83	-2.3
2,939,383	+		IAI47_13880	0.83	-3.3
2,939,383	+		IAI47_13880	0.83	-2.0
2,939,383	+		IAI47_13880	0.83	-1.6
2,939,383	+		IAI47_13880	0.83	-2.1
2,939,383	+		IAI47_13880	0.83	-1.0
2,939,384	-		IAI47_13880	0.83	-3.8
2,939,384	-		IAI47_13880	0.83	+0.0
2,939,384	-		IAI47_13880	0.83	-3.0
2,939,384	-		IAI47_13880	0.83	-3.1
2,939,384	-		IAI47_13880	0.83	-2.6
2,939,384	-		IAI47_13880	0.83	-4.3
2,939,384	-		IAI47_13880	0.83	-2.9
2,939,384	-		IAI47_13880	0.83	-2.0
2,939,384	-		IAI47_13880	0.83	-2.1
2,939,384	-		IAI47_13880	0.83	-2.8
2,939,477	+				-2.4
2,939,477	+				-1.8
2,939,503	+				+1.6
2,939,503	+				-0.3
2,939,516	+				-0.0
2,939,517	-				-1.7
2,939,543	+				+1.8
2,939,544	-				-2.0
2,939,544	-				-2.0
2,939,544	-				-2.3
2,939,544	-				-1.8
2,939,584	+				-3.1
2,939,584	+				-1.3
2,939,584	+				-1.3
2,939,584	+				-2.5
2,939,584	+				-2.1
2,939,591	+				-1.3
2,939,594	+				-4.1
2,940,302	+		IAI47_13885	0.63	-2.7
2,940,302	+		IAI47_13885	0.63	-2.0
2,940,302	+		IAI47_13885	0.63	-2.4
2,940,302	+		IAI47_13885	0.63	-1.6
2,940,727	+				+1.0
2,940,781	+				+1.3
2,940,781	+				-0.8
2,940,973	+		IAI47_13890	0.19	+0.4
2,940,973	+		IAI47_13890	0.19	-1.3
2,940,976	+		IAI47_13890	0.20	+0.3
2,940,976	+		IAI47_13890	0.20	+0.3
2,940,976	+		IAI47_13890	0.20	-0.1
2,940,977	-		IAI47_13890	0.20	+1.0
2,940,997	+		IAI47_13890	0.21	+0.3
2,940,997	+		IAI47_13890	0.21	+0.3
2,941,057	+		IAI47_13890	0.26	+2.8
2,941,057	+		IAI47_13890	0.26	+1.0
2,941,057	+		IAI47_13890	0.26	+0.8
2,941,079	+		IAI47_13890	0.28	+1.4
2,941,079	+		IAI47_13890	0.28	+0.6
2,941,080	-		IAI47_13890	0.28	+1.1
2,941,080	-		IAI47_13890	0.28	+0.2
2,941,080	-		IAI47_13890	0.28	+0.8
2,941,220	-		IAI47_13890	0.40	+1.0
2,941,236	-		IAI47_13890	0.41	+1.5
2,941,237	+		IAI47_13890	0.41	+0.5
2,941,237	+		IAI47_13890	0.41	+1.0
2,941,237	+		IAI47_13890	0.41	+0.0
2,941,238	-		IAI47_13890	0.41	+0.1
2,941,238	-		IAI47_13890	0.41	+0.3
2,941,247	-		IAI47_13890	0.42	-1.0
2,941,247	-		IAI47_13890	0.42	+0.4
2,941,247	-		IAI47_13890	0.42	+0.0
2,941,247	-		IAI47_13890	0.42	+0.0
2,941,247	-		IAI47_13890	0.42	+1.2
2,941,349	+		IAI47_13890	0.50	-0.1
2,941,350	-		IAI47_13890	0.50	+0.5
2,941,350	-		IAI47_13890	0.50	+0.7
2,941,350	-		IAI47_13890	0.50	-0.3
2,941,350	-		IAI47_13890	0.50	-2.0
2,941,395	+		IAI47_13890	0.54	+0.4
2,941,420	+		IAI47_13890	0.56	+0.4
2,941,420	+		IAI47_13890	0.56	+1.0
2,941,427	-		IAI47_13890	0.57	-0.6
2,941,435	+		IAI47_13890	0.57	-0.5
2,941,435	+		IAI47_13890	0.57	-1.4
2,941,435	+		IAI47_13890	0.57	+0.3
2,941,436	-		IAI47_13890	0.57	+1.0
2,941,633	+		IAI47_13890	0.73	-2.0
2,941,633	+		IAI47_13890	0.73	+0.0
2,941,697	+		IAI47_13890	0.79	+0.3
2,941,697	+		IAI47_13890	0.79	+0.3
2,941,711	+		IAI47_13890	0.80	-0.4
2,941,711	+		IAI47_13890	0.80	+2.0
2,941,712	-		IAI47_13890	0.80	-0.1
2,941,712	-		IAI47_13890	0.80	+0.4