Strain Fitness in Pantoea sp. MT58 around IAI47_08405

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
1,779,835	+		IAI47_08395	0.81	+0.2
1,779,835	+		IAI47_08395	0.81	-1.6
1,779,836	-		IAI47_08395	0.81	-0.6
1,779,853	+		IAI47_08395	0.82	+0.2
1,779,854	-		IAI47_08395	0.82	-1.6
1,779,854	-		IAI47_08395	0.82	+0.2
1,779,975	+				+0.3
1,779,975	+				-0.1
1,779,975	+				-0.2
1,779,976	-				+1.1
1,779,976	-				-0.6
1,779,976	-				-0.2
1,779,976	-				+0.7
1,779,976	-				-0.7
1,779,976	-				+0.7
1,780,010	+				+1.1
1,780,010	+				-0.6
1,780,010	+				-0.9
1,780,010	+				-0.8
1,780,010	+				+0.1
1,780,010	+				-1.2
1,780,010	+				-1.1
1,780,010	+				-0.2
1,780,011	-				+1.5
1,780,011	-				+0.5
1,780,014	+				-0.6
1,780,014	+				-0.8
1,780,014	+				+0.8
1,780,014	+				-1.3
1,780,014	+				-0.3
1,780,014	+				+0.6
1,780,015	-				-0.3
1,780,015	-				+1.2
1,780,015	-				+1.4
1,780,015	-				+0.2
1,780,015	-				+0.7
1,780,015	-				-0.4
1,780,015	-				-0.1
1,780,015	-				+0.1
1,780,019	-				-1.1
1,780,048	+				-0.5
1,780,048	+				-0.2
1,780,049	-				+0.4
1,780,065	+				+0.6
1,780,066	-				-1.4
1,780,066	-				-0.6
1,780,066	-				-1.6
1,780,120	+				+1.5
1,780,121	-				+0.0
1,780,121	-				+2.1
1,780,146	+				-1.9
1,780,147	-				+1.4
1,780,147	-				+0.1
1,780,171	+				-0.6
1,780,398	+		IAI47_08400	0.34	+0.6
1,780,398	+		IAI47_08400	0.34	+0.5
1,780,398	+		IAI47_08400	0.34	+0.3
1,780,399	-		IAI47_08400	0.34	+0.2
1,780,399	-		IAI47_08400	0.34	+1.8
1,780,399	-		IAI47_08400	0.34	+0.7
1,780,454	-		IAI47_08400	0.43	-0.9
1,780,461	-		IAI47_08400	0.44	-0.4
1,780,515	+		IAI47_08400	0.52	+0.2
1,780,515	+		IAI47_08400	0.52	-0.6
1,780,516	-		IAI47_08400	0.53	-1.6
1,780,578	+		IAI47_08400	0.63	+1.3
1,780,578	+		IAI47_08400	0.63	+0.3
1,780,579	-		IAI47_08400	0.63	+0.1
1,780,579	-		IAI47_08400	0.63	+0.1
1,780,655	+		IAI47_08400	0.75	-0.2
1,780,655	+		IAI47_08400	0.75	-0.1
1,780,655	+		IAI47_08400	0.75	+0.2
1,780,655	+		IAI47_08400	0.75	-0.8
1,780,655	+		IAI47_08400	0.75	+0.4
1,780,655	+		IAI47_08400	0.75	+0.6
1,780,655	+		IAI47_08400	0.75	-0.8
1,780,655	+		IAI47_08400	0.75	+0.7
1,780,655	+		IAI47_08400	0.75	+0.5
1,780,656	-		IAI47_08400	0.75	-1.4
1,780,656	-		IAI47_08400	0.75	-0.3
1,780,656	-		IAI47_08400	0.75	-1.2
1,780,656	-		IAI47_08400	0.75	-0.1
1,780,656	-		IAI47_08400	0.75	-0.5
1,780,656	-		IAI47_08400	0.75	+1.9
1,780,656	-		IAI47_08400	0.75	-0.1
1,780,656	-		IAI47_08400	0.75	-0.4
1,780,656	-		IAI47_08400	0.75	-0.5
1,780,704	+		IAI47_08400	0.83	-0.3
1,780,738	+		IAI47_08400	0.88	+0.2
1,780,738	+		IAI47_08400	0.88	-1.1
1,780,738	+		IAI47_08400	0.88	+1.5
1,780,738	+		IAI47_08400	0.88	+0.4
1,780,738	+		IAI47_08400	0.88	-0.4
1,780,739	-		IAI47_08400	0.88	+0.6
1,780,739	-		IAI47_08400	0.88	-1.9
1,780,739	-		IAI47_08400	0.88	-0.4
1,780,816	+				+0.4
1,780,978	-		IAI47_08405	0.17	-0.6
1,780,978	-		IAI47_08405	0.17	-0.7
1,780,978	-		IAI47_08405	0.17	-2.1
1,781,059	+		IAI47_08405	0.25	+1.5
1,781,060	-		IAI47_08405	0.25	+0.6
1,781,157	+		IAI47_08405	0.35	+1.9
1,781,157	+		IAI47_08405	0.35	+1.7
1,781,158	-		IAI47_08405	0.35	+0.5
1,781,188	+		IAI47_08405	0.38	-2.2
1,781,188	+		IAI47_08405	0.38	+1.2
1,781,189	-		IAI47_08405	0.39	-0.6
1,781,189	-		IAI47_08405	0.39	-1.4
1,781,214	-		IAI47_08405	0.41	+0.7
1,781,227	-		IAI47_08405	0.43	-0.1
1,781,236	-		IAI47_08405	0.43	+0.2
1,781,247	-		IAI47_08405	0.45	-0.1
1,781,291	+		IAI47_08405	0.49	+0.9
1,781,292	-		IAI47_08405	0.49	+0.9
1,781,433	+		IAI47_08405	0.64	+1.2
1,781,434	-		IAI47_08405	0.64	+0.4
1,781,434	-		IAI47_08405	0.64	+0.9
1,781,434	-		IAI47_08405	0.64	-1.1
1,781,434	-		IAI47_08405	0.64	-1.8
1,781,434	-		IAI47_08405	0.64	-0.3
1,781,435	+		IAI47_08405	0.64	-0.2
1,781,435	+		IAI47_08405	0.64	+0.3
1,781,435	+		IAI47_08405	0.64	-0.4
1,781,435	+		IAI47_08405	0.64	-0.2
1,781,435	+		IAI47_08405	0.64	+0.6
1,781,435	+		IAI47_08405	0.64	-1.1
1,781,435	+		IAI47_08405	0.64	-0.6
1,781,435	+		IAI47_08405	0.64	-1.1
1,781,435	+		IAI47_08405	0.64	-0.1
1,781,435	+		IAI47_08405	0.64	-0.5
1,781,436	-		IAI47_08405	0.64	-0.3
1,781,436	-		IAI47_08405	0.64	+0.0
1,781,436	-		IAI47_08405	0.64	+0.1
1,781,436	-		IAI47_08405	0.64	+1.4
1,781,436	-		IAI47_08405	0.64	-1.9
1,781,436	-		IAI47_08405	0.64	-2.8
1,781,436	-		IAI47_08405	0.64	-0.1
1,781,436	-		IAI47_08405	0.64	-0.4
1,781,436	-		IAI47_08405	0.64	-0.8
1,781,436	-		IAI47_08405	0.64	+0.1
1,781,436	-		IAI47_08405	0.64	+2.3
1,781,486	+		IAI47_08405	0.69	-0.2
1,781,487	-		IAI47_08405	0.69	-0.1
1,781,487	-		IAI47_08405	0.69	-0.4
1,781,497	+		IAI47_08405	0.70	-1.5
1,781,497	+		IAI47_08405	0.70	-0.7
1,781,498	-		IAI47_08405	0.70	+1.5
1,781,498	-		IAI47_08405	0.70	-1.2
1,781,498	-		IAI47_08405	0.70	-1.2
1,781,506	+		IAI47_08405	0.71	-0.9
1,781,507	-		IAI47_08405	0.71	-1.4
1,781,535	-		IAI47_08405	0.74	+0.3
1,781,541	+		IAI47_08405	0.75	+1.5
1,781,541	+		IAI47_08405	0.75	+0.1
1,781,542	-		IAI47_08405	0.75	-0.5
1,781,600	+		IAI47_08405	0.81	+1.8
1,781,601	-		IAI47_08405	0.81	+0.7
1,781,642	-		IAI47_08405	0.85	-0.6
1,781,642	-		IAI47_08405	0.85	+1.3
1,781,642	-		IAI47_08405	0.85	+0.6
1,781,715	+				-0.2
1,781,809	+				-0.1
1,781,866	+		IAI47_08410	0.12	-0.3
1,781,866	+		IAI47_08410	0.12	-0.1
1,781,911	+		IAI47_08410	0.18	+0.9
1,781,911	+		IAI47_08410	0.18	+0.1
1,781,911	+		IAI47_08410	0.18	-0.1
1,781,912	-		IAI47_08410	0.18	-0.6
1,782,046	+		IAI47_08410	0.36	-0.4
1,782,046	+		IAI47_08410	0.36	+1.1
1,782,046	+		IAI47_08410	0.36	-1.1
1,782,110	-		IAI47_08410	0.45	-1.9
1,782,115	+		IAI47_08410	0.46	-0.3
1,782,115	+		IAI47_08410	0.46	-0.1
1,782,116	-		IAI47_08410	0.46	+1.8
1,782,140	+		IAI47_08410	0.49	-0.7
1,782,141	-		IAI47_08410	0.50	-0.9
1,782,141	-		IAI47_08410	0.50	-1.5
1,782,141	-		IAI47_08410	0.50	-1.4
1,782,149	-		IAI47_08410	0.51	-0.6
1,782,149	-		IAI47_08410	0.51	+0.5
1,782,242	-		IAI47_08410	0.63	-1.8
1,782,277	+		IAI47_08410	0.68	-1.8
1,782,278	-		IAI47_08410	0.68	+1.5
1,782,327	+		IAI47_08410	0.75	+0.2
1,782,327	+		IAI47_08410	0.75	-1.4
1,782,327	+		IAI47_08410	0.75	-0.1
1,782,347	-		IAI47_08410	0.78	-0.4
1,782,543	-				+1.9
1,782,591	+				+0.9
1,782,592	-				+1.3
1,782,592	-				-0.1
1,782,592	-				+0.8
1,782,624	+				-0.5
1,782,625	-				-0.1
1,782,625	-				+0.3
1,782,625	-				-0.6
1,782,625	-				-0.7
1,782,628	+				-1.1
1,782,628	+				+0.9
1,782,628	+				+0.6
1,782,628	+				+0.1
1,782,681	+		IAI47_08415	0.23	-0.6
1,782,681	+		IAI47_08415	0.23	-0.6
1,782,681	+		IAI47_08415	0.23	-0.1
1,782,682	-		IAI47_08415	0.23	-0.0
1,782,682	-		IAI47_08415	0.23	+0.8
1,782,682	-		IAI47_08415	0.23	-0.5
1,782,682	-		IAI47_08415	0.23	+0.4
1,782,685	+		IAI47_08415	0.24	-0.1
1,782,686	-		IAI47_08415	0.24	+1.2
1,782,686	-		IAI47_08415	0.24	-0.6
1,782,686	-		IAI47_08415	0.24	+0.9
1,782,710	+		IAI47_08415	0.30	-0.2
1,782,775	+		IAI47_08415	0.47	-0.1