Strain Fitness in Pantoea sp. MT58 around IAI47_07150

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
1,508,044	+		IAI47_07145	0.22	-0.1
1,508,135	+		IAI47_07145	0.29	+0.0
1,508,135	+		IAI47_07145	0.29	+0.7
1,508,136	-		IAI47_07145	0.29	+1.1
1,508,136	-		IAI47_07145	0.29	+1.9
1,508,144	+		IAI47_07145	0.30	+0.9
1,508,345	+		IAI47_07145	0.46	-1.9
1,508,345	+		IAI47_07145	0.46	+0.2
1,508,345	-		IAI47_07145	0.46	+1.5
1,508,346	-		IAI47_07145	0.46	-1.6
1,508,346	-		IAI47_07145	0.46	+0.3
1,508,346	-		IAI47_07145	0.46	+0.8
1,508,346	-		IAI47_07145	0.46	+0.6
1,508,346	-		IAI47_07145	0.46	-1.1
1,508,408	-		IAI47_07145	0.51	-0.6
1,508,526	+		IAI47_07145	0.60	-0.3
1,508,526	+		IAI47_07145	0.60	+0.6
1,508,527	-		IAI47_07145	0.60	+0.5
1,508,637	-		IAI47_07145	0.69	+0.1
1,508,637	-		IAI47_07145	0.69	+0.1
1,508,637	-		IAI47_07145	0.69	-0.1
1,508,661	+		IAI47_07145	0.71	+0.4
1,508,745	-		IAI47_07145	0.78	-0.8
1,508,830	+		IAI47_07145	0.84	-0.3
1,508,881	-		IAI47_07145	0.88	+0.1
1,508,920	-				-1.3
1,509,016	+				-0.5
1,509,016	+				-1.2
1,509,017	-				+1.2
1,509,017	-				+0.8
1,509,017	-				-1.3
1,509,017	-				-0.1
1,509,017	-				-0.6
1,509,020	+				-0.1
1,509,020	+				-0.5
1,509,020	+				+0.6
1,509,020	+				+0.4
1,509,020	+				-1.9
1,509,021	-				-0.2
1,509,021	-				-0.2
1,509,021	-				+1.5
1,509,021	-				-0.2
1,509,102	+		IAI47_07150	0.13	+1.4
1,509,122	+		IAI47_07150	0.16	+0.8
1,509,122	+		IAI47_07150	0.16	-1.6
1,509,123	-		IAI47_07150	0.16	+0.2
1,509,123	-		IAI47_07150	0.16	+0.8
1,509,123	-		IAI47_07150	0.16	-0.6
1,509,131	+		IAI47_07150	0.17	+1.3
1,509,131	+		IAI47_07150	0.17	-1.4
1,509,131	+		IAI47_07150	0.17	+0.9
1,509,131	+		IAI47_07150	0.17	+0.2
1,509,131	+		IAI47_07150	0.17	-1.3
1,509,131	+		IAI47_07150	0.17	-0.7
1,509,131	+		IAI47_07150	0.17	-0.5
1,509,131	+		IAI47_07150	0.17	-0.4
1,509,132	-		IAI47_07150	0.17	-0.2
1,509,132	-		IAI47_07150	0.17	-1.1
1,509,132	-		IAI47_07150	0.17	+0.1
1,509,132	-		IAI47_07150	0.17	-1.1
1,509,132	-		IAI47_07150	0.17	+1.3
1,509,132	-		IAI47_07150	0.17	+0.2
1,509,190	+		IAI47_07150	0.26	+0.4
1,509,191	-		IAI47_07150	0.26	-0.1
1,509,246	-		IAI47_07150	0.35	+0.7
1,509,290	+		IAI47_07150	0.42	-0.1
1,509,290	+		IAI47_07150	0.42	-2.1
1,509,291	-		IAI47_07150	0.42	-0.6
1,509,291	-		IAI47_07150	0.42	-0.4
1,509,323	+		IAI47_07150	0.47	-1.0
1,509,324	-		IAI47_07150	0.47	+0.1
1,509,330	+		IAI47_07150	0.48	-0.2
1,509,331	-		IAI47_07150	0.48	-0.1
1,509,331	-		IAI47_07150	0.48	-0.9
1,509,331	-		IAI47_07150	0.48	+0.1
1,509,390	-		IAI47_07150	0.57	-0.5
1,509,390	-		IAI47_07150	0.57	+0.1
1,509,396	+		IAI47_07150	0.58	+0.9
1,509,396	+		IAI47_07150	0.58	+0.9
1,509,396	+		IAI47_07150	0.58	+0.5
1,509,396	+		IAI47_07150	0.58	-1.4
1,509,397	-		IAI47_07150	0.58	+0.1
1,509,397	-		IAI47_07150	0.58	-0.0
1,509,397	-		IAI47_07150	0.58	-0.1
1,509,397	-		IAI47_07150	0.58	-0.4
1,509,397	-		IAI47_07150	0.58	-0.5
1,509,397	-		IAI47_07150	0.58	-1.9
1,509,435	+		IAI47_07150	0.64	+0.9
1,509,435	+		IAI47_07150	0.64	-0.5
1,509,436	-		IAI47_07150	0.64	+0.4
1,509,436	-		IAI47_07150	0.64	-0.4
1,509,436	-		IAI47_07150	0.64	-0.1
1,509,438	+		IAI47_07150	0.65	+0.6
1,509,438	+		IAI47_07150	0.65	+0.1
1,509,438	+		IAI47_07150	0.65	+0.6
1,509,438	+		IAI47_07150	0.65	+0.5
1,509,438	+		IAI47_07150	0.65	-0.1
1,509,438	+		IAI47_07150	0.65	+0.5
1,509,439	-		IAI47_07150	0.65	-0.2
1,509,439	-		IAI47_07150	0.65	+1.9
1,509,439	-		IAI47_07150	0.65	+0.9
1,509,439	-		IAI47_07150	0.65	-0.1
1,509,439	-		IAI47_07150	0.65	-1.2
1,509,439	-		IAI47_07150	0.65	+2.5
1,509,493	-		IAI47_07150	0.73	+0.2
1,509,545	-		IAI47_07150	0.81	-0.3
1,509,545	-		IAI47_07150	0.81	+0.2
1,509,624	+				-1.0
1,509,652	+				-0.8
1,509,652	+				-1.5
1,509,653	-				+0.4
1,509,653	-				+1.4
1,509,682	+				+1.6
1,509,776	+		IAI47_07155	0.14	-1.8
1,509,776	+		IAI47_07155	0.14	-0.4
1,509,776	+		IAI47_07155	0.14	+0.2
1,509,776	+		IAI47_07155	0.14	+1.2
1,509,777	-		IAI47_07155	0.14	-0.6
1,509,777	-		IAI47_07155	0.14	+1.5
1,509,777	-		IAI47_07155	0.14	+0.2
1,509,777	-		IAI47_07155	0.14	-1.1
1,509,777	-		IAI47_07155	0.14	-0.1
1,509,798	+		IAI47_07155	0.17	+0.2
1,509,798	+		IAI47_07155	0.17	+2.5
1,509,798	+		IAI47_07155	0.17	-1.4
1,509,798	+		IAI47_07155	0.17	-1.0
1,509,799	-		IAI47_07155	0.17	+1.5
1,509,817	+		IAI47_07155	0.19	-0.9
1,509,817	+		IAI47_07155	0.19	-0.2
1,509,818	-		IAI47_07155	0.19	+1.5
1,509,818	-		IAI47_07155	0.19	+0.4
1,509,818	-		IAI47_07155	0.19	+0.4
1,509,913	+		IAI47_07155	0.32	-0.9
1,509,913	+		IAI47_07155	0.32	-0.6
1,509,973	+		IAI47_07155	0.39	+0.8
1,509,973	+		IAI47_07155	0.39	+0.7
1,509,973	+		IAI47_07155	0.39	-0.4
1,509,973	+		IAI47_07155	0.39	-0.1
1,509,973	+		IAI47_07155	0.39	-1.2
1,509,973	+		IAI47_07155	0.39	+0.4
1,509,973	+		IAI47_07155	0.39	+0.1
1,509,974	-		IAI47_07155	0.39	+0.9
1,509,974	-		IAI47_07155	0.39	+0.7
1,509,974	-		IAI47_07155	0.39	+0.2
1,509,974	-		IAI47_07155	0.39	+0.8
1,509,974	-		IAI47_07155	0.39	-1.4
1,509,974	-		IAI47_07155	0.39	-1.4
1,509,974	-		IAI47_07155	0.39	+0.2
1,509,974	-		IAI47_07155	0.39	+2.1
1,509,974	-		IAI47_07155	0.39	-0.4
1,510,016	+		IAI47_07155	0.45	+0.9
1,510,017	-		IAI47_07155	0.45	-0.2
1,510,017	-		IAI47_07155	0.45	+0.5
1,510,039	+		IAI47_07155	0.48	+2.6
1,510,039	+		IAI47_07155	0.48	+0.0
1,510,040	-		IAI47_07155	0.48	-0.4
1,510,040	-		IAI47_07155	0.48	-2.0
1,510,040	-		IAI47_07155	0.48	-0.9
1,510,040	-		IAI47_07155	0.48	+1.7
1,510,040	-		IAI47_07155	0.48	-0.1
1,510,040	-		IAI47_07155	0.48	+1.5
1,510,040	-		IAI47_07155	0.48	+1.5
1,510,040	-		IAI47_07155	0.48	+0.4
1,510,040	-		IAI47_07155	0.48	+0.9
1,510,089	+		IAI47_07155	0.54	-0.6
1,510,089	+		IAI47_07155	0.54	-0.9
1,510,090	-		IAI47_07155	0.54	+1.8
1,510,090	-		IAI47_07155	0.54	+0.0
1,510,090	-		IAI47_07155	0.54	+0.9
1,510,111	+		IAI47_07155	0.57	+0.5
1,510,111	+		IAI47_07155	0.57	+1.5
1,510,112	-		IAI47_07155	0.57	-0.1
1,510,112	-		IAI47_07155	0.57	-1.9
1,510,121	+		IAI47_07155	0.58	+0.2
1,510,121	+		IAI47_07155	0.58	+0.9
1,510,121	+		IAI47_07155	0.58	-0.3
1,510,121	+		IAI47_07155	0.58	-0.6
1,510,121	+		IAI47_07155	0.58	+0.5
1,510,121	+		IAI47_07155	0.58	+0.3
1,510,121	+		IAI47_07155	0.58	+1.9
1,510,121	+		IAI47_07155	0.58	-1.9
1,510,121	+		IAI47_07155	0.58	+0.5
1,510,122	-		IAI47_07155	0.58	+0.1
1,510,122	-		IAI47_07155	0.58	-2.9
1,510,122	-		IAI47_07155	0.58	-0.1
1,510,122	-		IAI47_07155	0.58	-1.4
1,510,122	-		IAI47_07155	0.58	-1.2
1,510,140	-		IAI47_07155	0.60	-1.1
1,510,187	-		IAI47_07155	0.66	-0.1
1,510,187	-		IAI47_07155	0.66	-0.2
1,510,187	-		IAI47_07155	0.66	+1.4
1,510,250	+		IAI47_07155	0.74	-0.2
1,510,251	-		IAI47_07155	0.75	-0.6
1,510,251	-		IAI47_07155	0.75	-0.8
1,510,262	+		IAI47_07155	0.76	-1.3
1,510,263	-		IAI47_07155	0.76	+0.7
1,510,272	+		IAI47_07155	0.77	+0.2
1,510,273	-		IAI47_07155	0.77	+0.5
1,510,273	-		IAI47_07155	0.77	+0.4
1,510,321	+		IAI47_07155	0.83	-0.1
1,510,322	-		IAI47_07155	0.84	-0.6
1,510,326	-		IAI47_07155	0.84	-1.8
1,510,326	-		IAI47_07155	0.84	-0.4
1,510,326	-		IAI47_07155	0.84	+1.9
1,510,331	+		IAI47_07155	0.85	-1.4
1,510,331	+		IAI47_07155	0.85	+0.8
1,510,332	-		IAI47_07155	0.85	-0.1
1,510,332	-		IAI47_07155	0.85	-1.5
1,510,361	+		IAI47_07155	0.89	+1.8
1,510,362	-		IAI47_07155	0.89	-0.5
1,510,362	-		IAI47_07155	0.89	+0.2
1,510,385	+				+0.8
1,510,385	+				-0.9
1,510,385	+				+0.1
1,510,385	+				-0.1
1,510,386	-				+0.3
1,510,386	-				+0.3
1,510,386	-				+2.1
1,510,440	+				+0.2
1,510,441	-				+0.4
1,510,453	+				-0.6
1,510,454	-				+0.3
1,510,525	-				+0.7
1,510,571	+				-2.4
1,510,572	-				-1.1
1,510,572	-				-0.6
1,510,572	-				+0.8
1,510,574	+				+0.5
1,510,575	-				+0.6
1,510,601	-				+0.7
1,510,601	-				+1.1