Strain Fitness in Pantoea sp. MT58 around IAI47_07120

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
1,500,677	-		IAI47_07110	0.70	-0.1
1,500,709	-		IAI47_07110	0.72	+1.9
1,500,805	-		IAI47_07110	0.80	-0.7
1,500,824	+		IAI47_07110	0.81	+0.2
1,500,825	-		IAI47_07110	0.81	+0.1
1,500,825	-		IAI47_07110	0.81	-0.9
1,500,837	+		IAI47_07110	0.82	-0.6
1,500,837	+		IAI47_07110	0.82	-0.8
1,500,838	-		IAI47_07110	0.82	+0.2
1,500,838	-		IAI47_07110	0.82	+0.4
1,500,862	+		IAI47_07110	0.84	-1.3
1,500,863	-		IAI47_07110	0.84	+0.4
1,500,863	-		IAI47_07110	0.84	+0.4
1,500,915	+		IAI47_07110	0.88	-0.9
1,500,916	-		IAI47_07110	0.88	-0.5
1,500,971	-				-0.8
1,501,024	+				+2.9
1,501,041	+				-0.5
1,501,041	+				-1.6
1,501,041	+				-1.1
1,501,042	-				+0.2
1,501,042	-				-1.8
1,501,042	-				-0.5
1,501,042	-				+1.5
1,501,042	-				+0.1
1,501,044	+				-0.1
1,501,044	+				+1.0
1,501,044	+				+0.4
1,501,044	+				-0.8
1,501,044	+				-0.2
1,501,045	-				-0.3
1,501,045	-				-0.4
1,501,045	-				+0.9
1,501,045	-				+0.1
1,501,045	-				-0.5
1,501,045	-				-1.8
1,501,045	-				+0.8
1,501,056	+				+2.1
1,501,056	+				+0.0
1,501,056	+				-0.4
1,501,057	-				-1.1
1,501,057	-				+0.8
1,501,057	-				-1.0
1,501,057	-				+3.8
1,501,057	-				+0.1
1,501,057	-				-0.1
1,501,063	+				-0.2
1,501,064	-				-0.9
1,501,064	-				+0.7
1,501,143	-		IAI47_07115	0.11	+0.3
1,501,155	+		IAI47_07115	0.13	+0.1
1,501,174	+		IAI47_07115	0.16	+0.1
1,501,174	+		IAI47_07115	0.16	-0.7
1,501,174	+		IAI47_07115	0.16	+0.1
1,501,174	+		IAI47_07115	0.16	-0.5
1,501,174	+		IAI47_07115	0.16	-1.1
1,501,174	+		IAI47_07115	0.16	-0.6
1,501,174	+		IAI47_07115	0.16	+0.1
1,501,174	+		IAI47_07115	0.16	-0.4
1,501,175	-		IAI47_07115	0.16	+0.2
1,501,175	-		IAI47_07115	0.16	+1.1
1,501,175	-		IAI47_07115	0.16	+0.7
1,501,175	-		IAI47_07115	0.16	+0.8
1,501,175	-		IAI47_07115	0.16	+0.2
1,501,175	-		IAI47_07115	0.16	+0.3
1,501,175	-		IAI47_07115	0.16	-0.4
1,501,223	+		IAI47_07115	0.25	-0.9
1,501,224	-		IAI47_07115	0.25	-0.8
1,501,284	-		IAI47_07115	0.36	+1.9
1,501,300	+		IAI47_07115	0.39	+2.8
1,501,301	-		IAI47_07115	0.39	-0.9
1,501,301	-		IAI47_07115	0.39	+0.2
1,501,301	-		IAI47_07115	0.39	+0.6
1,501,465	+		IAI47_07115	0.68	-1.1
1,501,466	-		IAI47_07115	0.69	-0.9
1,501,511	+		IAI47_07115	0.77	+0.9
1,501,511	+		IAI47_07115	0.77	-0.5
1,501,511	+		IAI47_07115	0.77	-0.1
1,501,512	-		IAI47_07115	0.77	+0.9
1,501,512	-		IAI47_07115	0.77	+1.9
1,501,526	+		IAI47_07115	0.79	+0.1
1,501,527	-		IAI47_07115	0.80	+0.5
1,501,677	+				-1.5
1,501,678	-				-1.1
1,501,742	-		IAI47_07120	0.14	-0.6
1,501,837	+		IAI47_07120	0.27	-1.4
1,501,876	-		IAI47_07120	0.32	-0.9
1,501,876	-		IAI47_07120	0.32	-0.1
1,501,876	-		IAI47_07120	0.32	-1.5
1,501,888	+		IAI47_07120	0.33	-0.1
1,501,888	+		IAI47_07120	0.33	-1.4
1,501,940	+		IAI47_07120	0.40	+0.4
1,501,940	+		IAI47_07120	0.40	+2.5
1,501,940	+		IAI47_07120	0.40	-0.3
1,501,940	+		IAI47_07120	0.40	-1.6
1,501,940	+		IAI47_07120	0.40	-1.1
1,501,940	+		IAI47_07120	0.40	-0.9
1,501,940	+		IAI47_07120	0.40	-0.8
1,501,941	-		IAI47_07120	0.40	-0.5
1,501,941	-		IAI47_07120	0.40	+1.2
1,502,079	+		IAI47_07120	0.58	-0.8
1,502,080	-		IAI47_07120	0.58	-0.2
1,502,101	+		IAI47_07120	0.61	+0.3
1,502,101	+		IAI47_07120	0.61	-1.6
1,502,101	+		IAI47_07120	0.61	-0.6
1,502,102	-		IAI47_07120	0.61	-2.1
1,502,163	-		IAI47_07120	0.69	-0.4
1,502,178	+		IAI47_07120	0.71	+0.5
1,502,178	+		IAI47_07120	0.71	-1.6
1,502,178	+		IAI47_07120	0.71	-0.2
1,502,181	+		IAI47_07120	0.71	-0.6
1,502,181	+		IAI47_07120	0.71	-0.6
1,502,182	-		IAI47_07120	0.71	-0.3
1,502,182	-		IAI47_07120	0.71	-0.5
1,502,182	-		IAI47_07120	0.71	-0.2
1,502,223	+		IAI47_07120	0.77	+1.7
1,502,224	-		IAI47_07120	0.77	+0.3
1,502,233	+		IAI47_07120	0.78	+0.2
1,502,233	+		IAI47_07120	0.78	-0.6
1,502,234	-		IAI47_07120	0.78	-0.7
1,502,236	+		IAI47_07120	0.79	-0.1
1,502,236	+		IAI47_07120	0.79	-0.6
1,502,236	+		IAI47_07120	0.79	+0.1
1,502,237	-		IAI47_07120	0.79	-2.1
1,502,237	-		IAI47_07120	0.79	-0.6
1,502,237	-		IAI47_07120	0.79	+0.1
1,502,237	-		IAI47_07120	0.79	-0.4
1,502,237	-		IAI47_07120	0.79	-0.9
1,502,307	+		IAI47_07120	0.88	-0.4
1,502,307	+		IAI47_07120	0.88	-1.3
1,502,308	-		IAI47_07120	0.88	-0.6
1,502,308	-		IAI47_07120	0.88	+0.2
1,502,308	-		IAI47_07120	0.88	-0.2
1,502,309	+		IAI47_07120	0.88	-0.1
1,502,309	+		IAI47_07120	0.88	-1.1
1,502,309	+		IAI47_07120	0.88	-1.1
1,502,310	-		IAI47_07120	0.88	-0.1
1,502,310	-		IAI47_07120	0.88	-0.4
1,502,310	-		IAI47_07120	0.88	+0.9
1,502,365	+				-0.3
1,502,366	-				-0.5
1,502,392	-				-0.5
1,502,392	-				-0.6
1,502,428	+				-0.3
1,502,429	-				+0.4
1,502,456	+				+1.7
1,502,456	+				+0.7
1,502,456	+				+0.2
1,502,456	+				-1.3
1,502,456	+				+2.5
1,502,457	-				-2.1
1,502,457	-				-0.2
1,502,457	-				+0.2
1,502,457	-				+0.0
1,502,457	-				+1.5
1,502,457	-				+0.1
1,502,480	+				+0.2
1,502,481	-				+0.0
1,502,481	-				+1.4
1,502,481	-				+0.6
1,502,533	-				-1.2
1,502,543	+				-0.8
1,502,543	+				+0.5
1,502,543	+				-0.6
1,502,548	+				+0.7
1,502,549	-				+0.9
1,502,549	-				+1.9
1,502,575	+				+1.4
1,502,576	-				+1.4
1,502,585	+				+0.5
1,502,585	+				-1.4
1,502,585	+				+1.4
1,502,586	-				+1.5
1,502,586	-				+0.0
1,502,588	+				-0.7
1,502,588	+				+1.4
1,502,589	-				-1.0
1,502,610	+				+0.4
1,502,610	+				+1.7
1,502,611	-				-0.1
1,502,611	-				+0.1
1,502,611	-				-0.0
1,502,619	-				-0.9
1,502,716	+				-0.1
1,502,716	+				-0.8
1,502,716	+				-0.5
1,502,716	+				-0.4
1,502,717	-				+0.5
1,502,717	-				+0.0
1,502,717	-				-1.4
1,502,732	+				-0.4
1,502,741	+				+0.6
1,502,741	+				-0.1
1,502,741	+				+0.5
1,502,741	+				+0.4
1,502,741	+				-0.9
1,502,741	+				+0.6
1,502,742	-				-0.6
1,502,787	+		IAI47_07125	0.13	-1.1
1,502,787	+		IAI47_07125	0.13	-0.7
1,502,788	-		IAI47_07125	0.13	+0.2
1,502,788	-		IAI47_07125	0.13	+0.0
1,502,788	-		IAI47_07125	0.13	-0.9
1,502,806	+		IAI47_07125	0.14	+0.5
1,502,806	+		IAI47_07125	0.14	-0.3
1,502,807	-		IAI47_07125	0.14	+0.1
1,502,807	-		IAI47_07125	0.14	-0.1
1,502,807	-		IAI47_07125	0.14	+1.4
1,502,807	-		IAI47_07125	0.14	-2.1
1,502,807	-		IAI47_07125	0.14	-0.1
1,502,893	-		IAI47_07125	0.21	-0.1
1,502,916	+		IAI47_07125	0.22	+2.5
1,502,917	-		IAI47_07125	0.22	-1.1
1,502,921	+		IAI47_07125	0.22	-0.6
1,502,921	+		IAI47_07125	0.22	+0.7
1,502,921	+		IAI47_07125	0.22	-0.5
1,502,921	+		IAI47_07125	0.22	-0.6
1,502,921	+		IAI47_07125	0.22	-0.6
1,502,922	-		IAI47_07125	0.23	-2.4
1,502,922	-		IAI47_07125	0.23	-0.8
1,502,922	-		IAI47_07125	0.23	-0.9
1,502,922	-		IAI47_07125	0.23	+0.4
1,502,922	-		IAI47_07125	0.23	-0.6
1,503,022	-		IAI47_07125	0.30	-0.1
1,503,022	-		IAI47_07125	0.30	-0.1
1,503,068	+		IAI47_07125	0.33	+2.7
1,503,075	-		IAI47_07125	0.33	-0.4
1,503,088	+		IAI47_07125	0.34	-1.8
1,503,088	+		IAI47_07125	0.34	+2.1
1,503,089	-		IAI47_07125	0.34	-0.2
1,503,089	-		IAI47_07125	0.34	+0.3
1,503,123	+		IAI47_07125	0.37	-1.4
1,503,162	+		IAI47_07125	0.39	-1.8
1,503,163	-		IAI47_07125	0.40	-1.8
1,503,179	-		IAI47_07125	0.41	-0.4
1,503,179	-		IAI47_07125	0.41	-0.6
1,503,186	-		IAI47_07125	0.41	+0.9
1,503,186	-		IAI47_07125	0.41	+0.3
1,503,186	-		IAI47_07125	0.41	+0.9
1,503,189	+		IAI47_07125	0.41	+0.7
1,503,189	+		IAI47_07125	0.41	-0.6
1,503,189	+		IAI47_07125	0.41	-0.9
1,503,189	+		IAI47_07125	0.41	-0.6
1,503,190	-		IAI47_07125	0.41	-2.1
1,503,252	-		IAI47_07125	0.46	+0.5
1,503,301	-		IAI47_07125	0.49	+1.4
1,503,390	+		IAI47_07125	0.56	-0.4
1,503,391	-		IAI47_07125	0.56	-0.5