Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_06360 and IAI47_06365 are separated by 15 nucleotides IAI47_06365 and IAI47_06370 are separated by 113 nucleotides IAI47_06370 and IAI47_06375 are separated by 17 nucleotides IAI47_06375 and IAI47_06380 are separated by 2 nucleotides
IAI47_06360: IAI47_06360 - NADH-quinone oxidoreductase subunit A, at 1,293,849 to 1,294,292
_06360
IAI47_06365: IAI47_06365 - NADH-quinone oxidoreductase subunit B, at 1,294,308 to 1,294,985
_06365
IAI47_06370: IAI47_06370 - NADH-quinone oxidoreductase subunit C/D, at 1,295,099 to 1,296,898
_06370
IAI47_06375: IAI47_06375 - NADH-quinone oxidoreductase subunit NuoE, at 1,296,916 to 1,297,416
_06375
IAI47_06380: IAI47_06380 - NADH-quinone oxidoreductase subunit NuoF, at 1,297,419 to 1,298,759
_06380
Position (kb) 1295
1296
1297 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1294.104 kb on + strand, within IAI47_06360 at 1294.194 kb on + strand, within IAI47_06360 at 1294.243 kb on + strand, within IAI47_06360 at 1294.243 kb on + strand, within IAI47_06360 at 1294.256 kb on + strand at 1294.259 kb on + strand at 1294.259 kb on + strand at 1294.259 kb on + strand at 1294.259 kb on + strand at 1294.259 kb on + strand at 1294.259 kb on + strand at 1294.283 kb on + strand at 1294.284 kb on - strand at 1294.290 kb on + strand at 1294.290 kb on + strand at 1294.304 kb on + strand at 1294.305 kb on - strand at 1294.314 kb on + strand at 1294.315 kb on - strand at 1294.316 kb on + strand at 1294.316 kb on + strand at 1294.422 kb on + strand, within IAI47_06365 at 1294.422 kb on + strand, within IAI47_06365 at 1294.422 kb on + strand, within IAI47_06365 at 1294.423 kb on - strand, within IAI47_06365 at 1294.423 kb on - strand, within IAI47_06365 at 1294.425 kb on - strand, within IAI47_06365 at 1294.516 kb on - strand, within IAI47_06365 at 1294.661 kb on - strand, within IAI47_06365 at 1294.662 kb on + strand, within IAI47_06365 at 1294.663 kb on - strand, within IAI47_06365 at 1294.663 kb on - strand, within IAI47_06365 at 1294.728 kb on + strand, within IAI47_06365 at 1294.728 kb on + strand, within IAI47_06365 at 1294.729 kb on - strand, within IAI47_06365 at 1294.729 kb on - strand, within IAI47_06365 at 1294.738 kb on - strand, within IAI47_06365 at 1294.774 kb on + strand, within IAI47_06365 at 1294.774 kb on + strand, within IAI47_06365 at 1294.774 kb on + strand, within IAI47_06365 at 1294.775 kb on - strand, within IAI47_06365 at 1294.782 kb on + strand, within IAI47_06365 at 1294.782 kb on + strand, within IAI47_06365 at 1294.782 kb on + strand at 1294.782 kb on + strand, within IAI47_06365 at 1294.782 kb on + strand, within IAI47_06365 at 1294.783 kb on - strand, within IAI47_06365 at 1294.816 kb on - strand at 1294.816 kb on - strand at 1295.031 kb on + strand at 1295.031 kb on + strand at 1295.031 kb on + strand at 1295.093 kb on + strand at 1295.093 kb on + strand at 1295.098 kb on + strand at 1295.099 kb on - strand at 1295.099 kb on - strand at 1295.099 kb on - strand at 1295.099 kb on - strand at 1295.291 kb on - strand, within IAI47_06370 at 1295.307 kb on - strand, within IAI47_06370 at 1295.318 kb on + strand, within IAI47_06370 at 1295.346 kb on + strand, within IAI47_06370 at 1295.346 kb on + strand, within IAI47_06370 at 1295.347 kb on - strand, within IAI47_06370 at 1295.351 kb on - strand, within IAI47_06370 at 1295.504 kb on + strand at 1295.504 kb on + strand, within IAI47_06370 at 1295.505 kb on - strand, within IAI47_06370 at 1295.537 kb on - strand, within IAI47_06370 at 1295.832 kb on + strand, within IAI47_06370 at 1295.832 kb on + strand, within IAI47_06370 at 1295.832 kb on + strand, within IAI47_06370 at 1295.897 kb on + strand, within IAI47_06370 at 1295.897 kb on + strand, within IAI47_06370 at 1295.897 kb on + strand, within IAI47_06370 at 1295.898 kb on - strand, within IAI47_06370 at 1295.906 kb on + strand, within IAI47_06370 at 1295.907 kb on - strand, within IAI47_06370 at 1295.907 kb on - strand, within IAI47_06370 at 1295.954 kb on + strand, within IAI47_06370 at 1295.982 kb on + strand, within IAI47_06370 at 1296.060 kb on - strand, within IAI47_06370 at 1296.061 kb on + strand, within IAI47_06370 at 1296.276 kb on - strand, within IAI47_06370 at 1296.276 kb on - strand, within IAI47_06370 at 1296.335 kb on + strand, within IAI47_06370 at 1296.341 kb on - strand, within IAI47_06370 at 1296.425 kb on + strand, within IAI47_06370 at 1296.486 kb on - strand, within IAI47_06370 at 1296.486 kb on - strand, within IAI47_06370 at 1296.532 kb on + strand, within IAI47_06370 at 1296.556 kb on + strand, within IAI47_06370 at 1296.557 kb on - strand, within IAI47_06370 at 1296.557 kb on - strand, within IAI47_06370 at 1296.617 kb on - strand at 1296.731 kb on + strand at 1296.764 kb on + strand at 1296.852 kb on + strand at 1296.852 kb on + strand at 1296.853 kb on - strand at 1296.854 kb on + strand at 1296.855 kb on - strand at 1296.855 kb on - strand at 1296.863 kb on - strand at 1296.866 kb on - strand at 1296.878 kb on - strand at 1296.896 kb on + strand at 1296.900 kb on + strand at 1296.900 kb on + strand at 1296.900 kb on + strand at 1296.901 kb on - strand at 1296.901 kb on - strand at 1296.901 kb on - strand at 1296.924 kb on + strand at 1296.939 kb on + strand at 1297.098 kb on - strand at 1297.098 kb on - strand, within IAI47_06375 at 1297.186 kb on + strand, within IAI47_06375 at 1297.219 kb on + strand, within IAI47_06375 at 1297.437 kb on - strand at 1297.495 kb on + strand at 1297.521 kb on + strand at 1297.521 kb on + strand at 1297.713 kb on + strand, within IAI47_06380 at 1297.714 kb on - strand, within IAI47_06380 at 1297.813 kb on + strand, within IAI47_06380 at 1297.824 kb on + strand, within IAI47_06380 at 1297.825 kb on - strand, within IAI47_06380 at 1297.890 kb on - strand, within IAI47_06380
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 1,294,104 + IAI47_06360 0.57 -0.6 1,294,194 + IAI47_06360 0.78 -1.3 1,294,243 + IAI47_06360 0.89 +0.3 1,294,243 + IAI47_06360 0.89 -1.2 1,294,256 + -0.1 1,294,259 + +0.6 1,294,259 + +0.5 1,294,259 + -1.2 1,294,259 + -1.2 1,294,259 + +2.5 1,294,259 + -0.8 1,294,283 + -0.2 1,294,284 - +1.0 1,294,290 + -1.8 1,294,290 + +1.6 1,294,304 + -1.6 1,294,305 - -2.0 1,294,314 + -1.3 1,294,315 - -0.6 1,294,316 + -2.6 1,294,316 + -0.0 1,294,422 + IAI47_06365 0.17 -0.6 1,294,422 + IAI47_06365 0.17 -1.0 1,294,422 + IAI47_06365 0.17 -1.0 1,294,423 - IAI47_06365 0.17 +1.0 1,294,423 - IAI47_06365 0.17 -1.3 1,294,425 - IAI47_06365 0.17 -1.3 1,294,516 - IAI47_06365 0.31 -1.0 1,294,661 - IAI47_06365 0.52 -1.8 1,294,662 + IAI47_06365 0.52 -2.5 1,294,663 - IAI47_06365 0.52 -0.6 1,294,663 - IAI47_06365 0.52 -1.6 1,294,728 + IAI47_06365 0.62 -1.0 1,294,728 + IAI47_06365 0.62 -1.0 1,294,729 - IAI47_06365 0.62 -1.0 1,294,729 - IAI47_06365 0.62 -0.6 1,294,738 - IAI47_06365 0.63 -1.0 1,294,774 + IAI47_06365 0.69 -1.3 1,294,774 + IAI47_06365 0.69 +1.0 1,294,774 + IAI47_06365 0.69 -1.0 1,294,775 - IAI47_06365 0.69 -1.8 1,294,782 + IAI47_06365 0.70 -2.7 1,294,782 + IAI47_06365 0.70 -0.0 1,294,782 + -1.3 1,294,782 + IAI47_06365 0.70 -2.0 1,294,782 + IAI47_06365 0.70 -0.0 1,294,783 - IAI47_06365 0.70 -1.3 1,294,816 - -0.0 1,294,816 - -0.6 1,295,031 + +1.7 1,295,031 + -1.3 1,295,031 + -1.7 1,295,093 + -2.0 1,295,093 + -1.0 1,295,098 + -1.3 1,295,099 - -1.3 1,295,099 - -1.0 1,295,099 - -1.3 1,295,099 - -1.0 1,295,291 - IAI47_06370 0.11 -0.6 1,295,307 - IAI47_06370 0.12 +1.0 1,295,318 + IAI47_06370 0.12 -0.0 1,295,346 + IAI47_06370 0.14 -1.0 1,295,346 + IAI47_06370 0.14 -1.3 1,295,347 - IAI47_06370 0.14 -1.3 1,295,351 - IAI47_06370 0.14 -0.6 1,295,504 + -0.0 1,295,504 + IAI47_06370 0.23 -0.6 1,295,505 - IAI47_06370 0.23 -2.5 1,295,537 - IAI47_06370 0.24 -0.0 1,295,832 + IAI47_06370 0.41 -3.1 1,295,832 + IAI47_06370 0.41 -2.5 1,295,832 + IAI47_06370 0.41 -1.0 1,295,897 + IAI47_06370 0.44 +1.0 1,295,897 + IAI47_06370 0.44 -0.6 1,295,897 + IAI47_06370 0.44 -0.0 1,295,898 - IAI47_06370 0.44 +1.0 1,295,906 + IAI47_06370 0.45 -0.0 1,295,907 - IAI47_06370 0.45 +1.0 1,295,907 - IAI47_06370 0.45 -0.0 1,295,954 + IAI47_06370 0.47 -3.2 1,295,982 + IAI47_06370 0.49 -2.0 1,296,060 - IAI47_06370 0.53 -1.6 1,296,061 + IAI47_06370 0.53 -1.3 1,296,276 - IAI47_06370 0.65 +1.0 1,296,276 - IAI47_06370 0.65 -0.6 1,296,335 + IAI47_06370 0.69 -0.6 1,296,341 - IAI47_06370 0.69 -1.0 1,296,425 + IAI47_06370 0.74 +1.0 1,296,486 - IAI47_06370 0.77 -1.8 1,296,486 - IAI47_06370 0.77 +1.0 1,296,532 + IAI47_06370 0.80 -1.0 1,296,556 + IAI47_06370 0.81 -1.8 1,296,557 - IAI47_06370 0.81 -0.6 1,296,557 - IAI47_06370 0.81 -0.0 1,296,617 - -1.0 1,296,731 + -0.0 1,296,764 + -1.3 1,296,852 + -1.8 1,296,852 + -0.6 1,296,853 - -1.6 1,296,854 + -0.0 1,296,855 - -1.3 1,296,855 - -1.0 1,296,863 - -0.0 1,296,866 - -1.0 1,296,878 - -2.0 1,296,896 + -0.6 1,296,900 + -1.0 1,296,900 + -1.6 1,296,900 + -0.6 1,296,901 - -0.6 1,296,901 - -1.3 1,296,901 - -1.6 1,296,924 + -1.3 1,296,939 + -2.2 1,297,098 - -0.6 1,297,098 - IAI47_06375 0.36 -0.6 1,297,186 + IAI47_06375 0.54 -1.3 1,297,219 + IAI47_06375 0.60 -1.0 1,297,437 - -0.6 1,297,495 + -1.8 1,297,521 + -2.2 1,297,521 + -0.6 1,297,713 + IAI47_06380 0.22 -1.8 1,297,714 - IAI47_06380 0.22 -1.3 1,297,813 + IAI47_06380 0.29 -1.0 1,297,824 + IAI47_06380 0.30 -0.6 1,297,825 - IAI47_06380 0.30 -0.6 1,297,890 - IAI47_06380 0.35 -0.0
Or see this region's nucleotide sequence