Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03730 and IAI47_03740 are separated by 314 nucleotides IAI47_03740 and IAI47_03745 are separated by 170 nucleotides IAI47_03745 and IAI47_03750 are separated by 46 nucleotides
IAI47_03730: IAI47_03730 - 5-formyltetrahydrofolate cyclo-ligase, at 778,878 to 779,471
_03730
IAI47_03740: IAI47_03740 - cell division protein ZapA, at 779,786 to 780,115
_03740
IAI47_03745: IAI47_03745 - YecA family protein, at 780,286 to 780,864
_03745
IAI47_03750: IAI47_03750 - Xaa-Pro aminopeptidase, at 780,911 to 782,233
_03750
Position (kb) 779
780
781 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 778.805 kb on + strand at 778.805 kb on + strand at 778.805 kb on + strand at 778.805 kb on + strand at 778.806 kb on - strand at 778.806 kb on - strand at 778.879 kb on + strand at 778.879 kb on + strand at 778.880 kb on - strand at 778.911 kb on + strand at 778.912 kb on - strand at 778.912 kb on - strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.926 kb on + strand at 778.927 kb on - strand at 778.927 kb on - strand at 778.927 kb on - strand at 778.927 kb on - strand at 778.927 kb on - strand at 779.029 kb on + strand, within IAI47_03730 at 779.029 kb on + strand, within IAI47_03730 at 779.029 kb on + strand, within IAI47_03730 at 779.030 kb on - strand, within IAI47_03730 at 779.030 kb on - strand, within IAI47_03730 at 779.151 kb on - strand, within IAI47_03730 at 779.151 kb on - strand, within IAI47_03730 at 779.151 kb on - strand, within IAI47_03730 at 779.151 kb on - strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.154 kb on + strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.155 kb on - strand, within IAI47_03730 at 779.160 kb on - strand, within IAI47_03730 at 779.160 kb on - strand, within IAI47_03730 at 779.160 kb on - strand, within IAI47_03730 at 779.160 kb on - strand, within IAI47_03730 at 779.165 kb on + strand, within IAI47_03730 at 779.165 kb on + strand, within IAI47_03730 at 779.166 kb on - strand, within IAI47_03730 at 779.166 kb on - strand, within IAI47_03730 at 779.166 kb on - strand, within IAI47_03730 at 779.189 kb on - strand, within IAI47_03730 at 779.239 kb on + strand, within IAI47_03730 at 779.240 kb on - strand, within IAI47_03730 at 779.240 kb on - strand, within IAI47_03730 at 779.240 kb on - strand, within IAI47_03730 at 779.286 kb on - strand, within IAI47_03730 at 779.286 kb on - strand, within IAI47_03730 at 779.336 kb on + strand, within IAI47_03730 at 779.336 kb on + strand, within IAI47_03730 at 779.347 kb on + strand, within IAI47_03730 at 779.347 kb on + strand, within IAI47_03730 at 779.347 kb on + strand, within IAI47_03730 at 779.347 kb on + strand, within IAI47_03730 at 779.348 kb on - strand, within IAI47_03730 at 779.348 kb on - strand, within IAI47_03730 at 779.351 kb on + strand, within IAI47_03730 at 779.351 kb on + strand, within IAI47_03730 at 779.352 kb on - strand, within IAI47_03730 at 779.352 kb on - strand, within IAI47_03730 at 779.352 kb on - strand, within IAI47_03730 at 779.424 kb on + strand at 779.425 kb on - strand at 779.425 kb on - strand at 779.451 kb on + strand at 779.451 kb on + strand at 779.451 kb on + strand at 779.452 kb on - strand at 779.452 kb on - strand at 779.452 kb on - strand at 779.452 kb on - strand at 779.459 kb on + strand at 779.502 kb on + strand at 779.503 kb on - strand at 779.503 kb on - strand at 779.503 kb on - strand at 779.521 kb on + strand at 779.522 kb on - strand at 779.522 kb on - strand at 779.522 kb on - strand at 779.522 kb on - strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.523 kb on + strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.524 kb on - strand at 779.585 kb on + strand at 779.593 kb on - strand at 779.593 kb on - strand at 779.631 kb on + strand at 779.632 kb on - strand at 779.674 kb on - strand at 779.765 kb on + strand at 779.765 kb on + strand at 779.766 kb on - strand at 779.766 kb on - strand at 779.766 kb on - strand at 779.766 kb on - strand at 779.766 kb on - strand at 779.766 kb on - strand at 779.766 kb on - strand at 779.768 kb on + strand at 779.768 kb on + strand at 779.769 kb on - strand at 779.769 kb on - strand at 779.770 kb on + strand at 779.770 kb on + strand at 779.771 kb on - strand at 779.771 kb on - strand at 779.771 kb on - strand at 779.771 kb on - strand at 779.835 kb on - strand, within IAI47_03740 at 779.835 kb on - strand, within IAI47_03740 at 779.835 kb on - strand, within IAI47_03740 at 779.835 kb on - strand, within IAI47_03740 at 779.835 kb on - strand, within IAI47_03740 at 779.835 kb on - strand, within IAI47_03740 at 779.863 kb on + strand, within IAI47_03740 at 779.864 kb on - strand, within IAI47_03740 at 779.864 kb on - strand, within IAI47_03740 at 779.869 kb on + strand, within IAI47_03740 at 779.870 kb on - strand, within IAI47_03740 at 779.881 kb on + strand, within IAI47_03740 at 779.882 kb on - strand, within IAI47_03740 at 779.882 kb on - strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.884 kb on + strand, within IAI47_03740 at 779.885 kb on - strand, within IAI47_03740 at 779.885 kb on - strand, within IAI47_03740 at 779.885 kb on - strand, within IAI47_03740 at 779.893 kb on - strand, within IAI47_03740 at 779.968 kb on + strand, within IAI47_03740 at 779.968 kb on + strand, within IAI47_03740 at 779.968 kb on + strand, within IAI47_03740 at 779.969 kb on - strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.980 kb on + strand, within IAI47_03740 at 779.994 kb on - strand, within IAI47_03740 at 780.031 kb on + strand, within IAI47_03740 at 780.031 kb on + strand, within IAI47_03740 at 780.031 kb on + strand, within IAI47_03740 at 780.032 kb on - strand, within IAI47_03740 at 780.093 kb on - strand at 780.098 kb on + strand at 780.134 kb on + strand at 780.134 kb on + strand at 780.154 kb on + strand at 780.154 kb on + strand at 780.154 kb on + strand at 780.155 kb on - strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.184 kb on + strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.185 kb on - strand at 780.186 kb on + strand at 780.186 kb on + strand at 780.186 kb on + strand at 780.186 kb on + strand at 780.186 kb on + strand at 780.187 kb on - strand at 780.187 kb on - strand at 780.187 kb on - strand at 780.187 kb on - strand at 780.188 kb on + strand at 780.188 kb on + strand at 780.188 kb on + strand at 780.188 kb on + strand at 780.188 kb on + strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.189 kb on - strand at 780.201 kb on + strand at 780.201 kb on + strand at 780.202 kb on - strand at 780.202 kb on - strand at 780.202 kb on - strand at 780.206 kb on + strand at 780.206 kb on + strand at 780.207 kb on - strand at 780.207 kb on - strand at 780.207 kb on - strand at 780.238 kb on + strand at 780.239 kb on - strand at 780.239 kb on - strand at 780.244 kb on + strand at 780.244 kb on + strand at 780.245 kb on - strand at 780.249 kb on + strand at 780.249 kb on + strand at 780.249 kb on + strand at 780.250 kb on - strand at 780.260 kb on + strand at 780.260 kb on + strand at 780.261 kb on - strand at 780.285 kb on + strand at 780.285 kb on + strand at 780.285 kb on + strand at 780.285 kb on + strand at 780.286 kb on - strand at 780.286 kb on - strand at 780.293 kb on + strand at 780.293 kb on + strand at 780.293 kb on + strand at 780.294 kb on - strand at 780.294 kb on - strand at 780.294 kb on - strand at 780.313 kb on + strand at 780.313 kb on + strand at 780.354 kb on + strand, within IAI47_03745 at 780.354 kb on + strand, within IAI47_03745 at 780.354 kb on + strand, within IAI47_03745 at 780.354 kb on + strand, within IAI47_03745 at 780.355 kb on - strand, within IAI47_03745 at 780.383 kb on + strand, within IAI47_03745 at 780.434 kb on + strand, within IAI47_03745 at 780.434 kb on + strand, within IAI47_03745 at 780.516 kb on + strand, within IAI47_03745 at 780.516 kb on + strand, within IAI47_03745 at 780.578 kb on + strand, within IAI47_03745 at 780.578 kb on + strand, within IAI47_03745 at 780.578 kb on + strand, within IAI47_03745 at 780.578 kb on + strand, within IAI47_03745 at 780.579 kb on - strand, within IAI47_03745 at 780.639 kb on - strand, within IAI47_03745 at 780.639 kb on - strand, within IAI47_03745 at 780.648 kb on + strand, within IAI47_03745 at 780.648 kb on + strand, within IAI47_03745 at 780.649 kb on - strand, within IAI47_03745 at 780.649 kb on - strand, within IAI47_03745 at 780.657 kb on + strand, within IAI47_03745 at 780.775 kb on + strand, within IAI47_03745 at 780.775 kb on + strand, within IAI47_03745 at 780.775 kb on + strand, within IAI47_03745 at 780.775 kb on + strand, within IAI47_03745 at 780.775 kb on + strand, within IAI47_03745 at 780.776 kb on - strand, within IAI47_03745 at 780.776 kb on - strand, within IAI47_03745 at 780.776 kb on - strand, within IAI47_03745 at 780.776 kb on - strand, within IAI47_03745 at 780.776 kb on - strand, within IAI47_03745 at 780.807 kb on + strand at 780.807 kb on + strand at 780.807 kb on + strand at 780.807 kb on + strand at 780.858 kb on - strand at 780.858 kb on - strand at 780.858 kb on - strand at 780.858 kb on - strand at 780.858 kb on - strand at 780.862 kb on + strand at 780.862 kb on + strand at 780.862 kb on + strand at 780.862 kb on + strand at 780.863 kb on - strand at 780.863 kb on - strand at 780.895 kb on + strand at 780.929 kb on + strand at 780.929 kb on + strand at 781.028 kb on + strand at 781.072 kb on + strand, within IAI47_03750
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 778,805 + -0.2 778,805 + +1.0 778,805 + -0.8 778,805 + +0.4 778,806 - +0.4 778,806 - -0.6 778,879 + -0.3 778,879 + -0.3 778,880 - -1.6 778,911 + -2.1 778,912 - -0.4 778,912 - -0.5 778,926 + -2.1 778,926 + -1.0 778,926 + -1.0 778,926 + -3.1 778,926 + +0.7 778,926 + -2.7 778,926 + -2.9 778,926 + -1.8 778,926 + -1.8 778,927 - -1.1 778,927 - +0.3 778,927 - -2.1 778,927 - +1.0 778,927 - -1.0 779,029 + IAI47_03730 0.25 -0.3 779,029 + IAI47_03730 0.25 +0.0 779,029 + IAI47_03730 0.25 -0.4 779,030 - IAI47_03730 0.26 -1.8 779,030 - IAI47_03730 0.26 -0.1 779,151 - IAI47_03730 0.46 -2.1 779,151 - IAI47_03730 0.46 -3.1 779,151 - IAI47_03730 0.46 -1.4 779,151 - IAI47_03730 0.46 -0.6 779,154 + IAI47_03730 0.46 -1.6 779,154 + IAI47_03730 0.46 -1.3 779,154 + IAI47_03730 0.46 -2.9 779,154 + IAI47_03730 0.46 -1.6 779,154 + IAI47_03730 0.46 +0.0 779,155 - IAI47_03730 0.47 -0.6 779,155 - IAI47_03730 0.47 -1.8 779,155 - IAI47_03730 0.47 -2.1 779,155 - IAI47_03730 0.47 -2.4 779,155 - IAI47_03730 0.47 -1.7 779,160 - IAI47_03730 0.47 -1.6 779,160 - IAI47_03730 0.47 -1.6 779,160 - IAI47_03730 0.47 -2.1 779,160 - IAI47_03730 0.47 -2.1 779,165 + IAI47_03730 0.48 -2.1 779,165 + IAI47_03730 0.48 -1.8 779,166 - IAI47_03730 0.48 -2.0 779,166 - IAI47_03730 0.48 -2.7 779,166 - IAI47_03730 0.48 -2.3 779,189 - IAI47_03730 0.52 -2.6 779,239 + IAI47_03730 0.61 -1.8 779,240 - IAI47_03730 0.61 -1.0 779,240 - IAI47_03730 0.61 -3.2 779,240 - IAI47_03730 0.61 +1.0 779,286 - IAI47_03730 0.69 -1.0 779,286 - IAI47_03730 0.69 -1.0 779,336 + IAI47_03730 0.77 -1.6 779,336 + IAI47_03730 0.77 -2.1 779,347 + IAI47_03730 0.79 -1.6 779,347 + IAI47_03730 0.79 -2.3 779,347 + IAI47_03730 0.79 -0.6 779,347 + IAI47_03730 0.79 -2.9 779,348 - IAI47_03730 0.79 -2.7 779,348 - IAI47_03730 0.79 -0.6 779,351 + IAI47_03730 0.80 -0.6 779,351 + IAI47_03730 0.80 -0.3 779,352 - IAI47_03730 0.80 -4.2 779,352 - IAI47_03730 0.80 -3.2 779,352 - IAI47_03730 0.80 -3.6 779,424 + -2.1 779,425 - -1.8 779,425 - -2.0 779,451 + +0.5 779,451 + +0.3 779,451 + +0.2 779,452 - +3.0 779,452 - -1.3 779,452 - -0.2 779,452 - +0.7 779,459 + +1.2 779,502 + +1.0 779,503 - +0.5 779,503 - +0.6 779,503 - -0.9 779,521 + +0.0 779,522 - -1.8 779,522 - -0.2 779,522 - -0.4 779,522 - -0.8 779,523 + -0.9 779,523 + +0.6 779,523 + -1.7 779,523 + +1.0 779,523 + +0.4 779,523 + +1.0 779,523 + +0.4 779,523 + +0.3 779,523 + -0.2 779,524 - -0.1 779,524 - +0.7 779,524 - -0.2 779,524 - +1.0 779,524 - +0.3 779,524 - +1.6 779,524 - -1.0 779,524 - +0.0 779,585 + +0.5 779,593 - +2.6 779,593 - +2.0 779,631 + +0.9 779,632 - -1.1 779,674 - +0.4 779,765 + -0.7 779,765 + +1.6 779,766 - +0.8 779,766 - -0.2 779,766 - +0.0 779,766 - -0.2 779,766 - -2.7 779,766 - +0.6 779,766 - +1.0 779,768 + +1.0 779,768 + +0.0 779,769 - +0.0 779,769 - +0.4 779,770 + +0.0 779,770 + +1.0 779,771 - +1.3 779,771 - +0.6 779,771 - +1.2 779,771 - -0.9 779,835 - IAI47_03740 0.15 -1.0 779,835 - IAI47_03740 0.15 -0.3 779,835 - IAI47_03740 0.15 -0.3 779,835 - IAI47_03740 0.15 +0.0 779,835 - IAI47_03740 0.15 +0.0 779,835 - IAI47_03740 0.15 +1.3 779,863 + IAI47_03740 0.23 -0.4 779,864 - IAI47_03740 0.24 -0.1 779,864 - IAI47_03740 0.24 +0.6 779,869 + IAI47_03740 0.25 +0.2 779,870 - IAI47_03740 0.25 -0.7 779,881 + IAI47_03740 0.29 -1.2 779,882 - IAI47_03740 0.29 +0.0 779,882 - IAI47_03740 0.29 -0.7 779,884 + IAI47_03740 0.30 +0.5 779,884 + IAI47_03740 0.30 +0.1 779,884 + IAI47_03740 0.30 -0.7 779,884 + IAI47_03740 0.30 +0.0 779,884 + IAI47_03740 0.30 +0.3 779,884 + IAI47_03740 0.30 +0.5 779,884 + IAI47_03740 0.30 -0.3 779,885 - IAI47_03740 0.30 +1.5 779,885 - IAI47_03740 0.30 -0.6 779,885 - IAI47_03740 0.30 +0.0 779,893 - IAI47_03740 0.32 -1.4 779,968 + IAI47_03740 0.55 +1.3 779,968 + IAI47_03740 0.55 +0.8 779,968 + IAI47_03740 0.55 +2.2 779,969 - IAI47_03740 0.55 -1.6 779,980 + IAI47_03740 0.59 -0.1 779,980 + IAI47_03740 0.59 +0.0 779,980 + IAI47_03740 0.59 +2.6 779,980 + IAI47_03740 0.59 -0.4 779,980 + IAI47_03740 0.59 -0.7 779,994 - IAI47_03740 0.63 +0.1 780,031 + IAI47_03740 0.74 -0.2 780,031 + IAI47_03740 0.74 -1.4 780,031 + IAI47_03740 0.74 +1.4 780,032 - IAI47_03740 0.75 -0.4 780,093 - -0.3 780,098 + +0.4 780,134 + -0.2 780,134 + +0.0 780,154 + +0.1 780,154 + -0.7 780,154 + -0.6 780,155 - -0.9 780,184 + +0.8 780,184 + -0.4 780,184 + -0.1 780,184 + +1.0 780,184 + -1.1 780,184 + -0.3 780,184 + -0.3 780,185 - -1.3 780,185 - -1.0 780,185 - +0.0 780,185 - +1.3 780,185 - +1.3 780,185 - +0.1 780,185 - -2.1 780,185 - +1.6 780,185 - +0.0 780,185 - -0.9 780,185 - +0.0 780,185 - -0.1 780,185 - -0.7 780,185 - -2.2 780,185 - +0.6 780,186 + +0.3 780,186 + +1.6 780,186 + -0.4 780,186 + +0.8 780,186 + +1.3 780,187 - -0.6 780,187 - +1.0 780,187 - -0.1 780,187 - -0.1 780,188 + -1.3 780,188 + -0.3 780,188 + +0.0 780,188 + +2.0 780,188 + -1.1 780,189 - -1.0 780,189 - -2.0 780,189 - -0.4 780,189 - +0.4 780,189 - +0.3 780,189 - +1.6 780,189 - +0.4 780,189 - -0.3 780,201 + -0.3 780,201 + -0.1 780,202 - +0.6 780,202 - +1.0 780,202 - -1.0 780,206 + -0.6 780,206 + -1.0 780,207 - -0.1 780,207 - +0.0 780,207 - +0.6 780,238 + +0.7 780,239 - +1.0 780,239 - -0.5 780,244 + -0.8 780,244 + -1.3 780,245 - +0.6 780,249 + -0.4 780,249 + +0.2 780,249 + +0.3 780,250 - -0.8 780,260 + +0.8 780,260 + -0.2 780,261 - +0.2 780,285 + -0.1 780,285 + -1.8 780,285 + -0.8 780,285 + +0.8 780,286 - +1.0 780,286 - -2.2 780,293 + -1.6 780,293 + +0.0 780,293 + +1.9 780,294 - +0.3 780,294 - -0.7 780,294 - -0.1 780,313 + -0.1 780,313 + -0.8 780,354 + IAI47_03745 0.12 +0.2 780,354 + IAI47_03745 0.12 +0.7 780,354 + IAI47_03745 0.12 +0.2 780,354 + IAI47_03745 0.12 +0.1 780,355 - IAI47_03745 0.12 +0.0 780,383 + IAI47_03745 0.17 +0.6 780,434 + IAI47_03745 0.26 +1.0 780,434 + IAI47_03745 0.26 +0.0 780,516 + IAI47_03745 0.40 +0.0 780,516 + IAI47_03745 0.40 -0.6 780,578 + IAI47_03745 0.50 +0.0 780,578 + IAI47_03745 0.50 +0.1 780,578 + IAI47_03745 0.50 -0.1 780,578 + IAI47_03745 0.50 +3.2 780,579 - IAI47_03745 0.51 -1.4 780,639 - IAI47_03745 0.61 -0.2 780,639 - IAI47_03745 0.61 +1.0 780,648 + IAI47_03745 0.63 -0.3 780,648 + IAI47_03745 0.63 -0.9 780,649 - IAI47_03745 0.63 +0.6 780,649 - IAI47_03745 0.63 -1.0 780,657 + IAI47_03745 0.64 -2.2 780,775 + IAI47_03745 0.84 +0.5 780,775 + IAI47_03745 0.84 +0.2 780,775 + IAI47_03745 0.84 -1.0 780,775 + IAI47_03745 0.84 +0.4 780,775 + IAI47_03745 0.84 +0.4 780,776 - IAI47_03745 0.85 +2.6 780,776 - IAI47_03745 0.85 +0.0 780,776 - IAI47_03745 0.85 +1.4 780,776 - IAI47_03745 0.85 -0.3 780,776 - IAI47_03745 0.85 -1.3 780,807 + -0.8 780,807 + +0.4 780,807 + +1.0 780,807 + -0.7 780,858 - +0.2 780,858 - +0.7 780,858 - -0.7 780,858 - +1.9 780,858 - +1.3 780,862 + -0.6 780,862 + -0.6 780,862 + +1.0 780,862 + +1.0 780,863 - +0.4 780,863 - -1.4 780,895 + -1.8 780,929 + -0.7 780,929 + +1.0 781,028 + +1.0 781,072 + IAI47_03750 0.12 -1.0
Or see this region's nucleotide sequence