Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03615 and IAI47_03620 are separated by 87 nucleotides IAI47_03620 and IAI47_03625 are separated by 70 nucleotides IAI47_03625 and IAI47_03630 are separated by 75 nucleotides
IAI47_03615: IAI47_03615 - glutathione synthase, at 752,383 to 753,327
_03615
IAI47_03620: IAI47_03620 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 753,415 to 754,146
_03620
IAI47_03625: IAI47_03625 - deoxyribonuclease I, at 754,217 to 754,921
_03625
IAI47_03630: IAI47_03630 - SprT family zinc-dependent metalloprotease, at 754,997 to 755,509
_03630
Position (kb) 753
754
755 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 752.458 kb on + strand at 752.458 kb on + strand at 752.458 kb on + strand at 752.458 kb on + strand at 752.459 kb on - strand at 752.459 kb on - strand at 752.459 kb on - strand at 752.482 kb on - strand, within IAI47_03615 at 752.482 kb on - strand, within IAI47_03615 at 752.482 kb on - strand, within IAI47_03615 at 752.496 kb on + strand, within IAI47_03615 at 752.497 kb on - strand, within IAI47_03615 at 752.587 kb on + strand, within IAI47_03615 at 752.587 kb on + strand, within IAI47_03615 at 752.667 kb on - strand, within IAI47_03615 at 752.667 kb on - strand, within IAI47_03615 at 752.729 kb on + strand, within IAI47_03615 at 752.729 kb on + strand, within IAI47_03615 at 752.729 kb on + strand, within IAI47_03615 at 752.729 kb on + strand, within IAI47_03615 at 752.729 kb on + strand, within IAI47_03615 at 752.730 kb on - strand, within IAI47_03615 at 752.730 kb on - strand, within IAI47_03615 at 752.794 kb on - strand, within IAI47_03615 at 752.794 kb on - strand, within IAI47_03615 at 752.794 kb on - strand, within IAI47_03615 at 752.821 kb on - strand, within IAI47_03615 at 752.835 kb on + strand, within IAI47_03615 at 752.835 kb on + strand, within IAI47_03615 at 752.835 kb on + strand, within IAI47_03615 at 752.836 kb on - strand, within IAI47_03615 at 752.836 kb on - strand, within IAI47_03615 at 752.836 kb on - strand, within IAI47_03615 at 752.859 kb on + strand, within IAI47_03615 at 752.859 kb on + strand, within IAI47_03615 at 752.859 kb on + strand, within IAI47_03615 at 752.859 kb on + strand, within IAI47_03615 at 752.860 kb on - strand, within IAI47_03615 at 752.925 kb on + strand, within IAI47_03615 at 752.948 kb on + strand, within IAI47_03615 at 752.949 kb on - strand, within IAI47_03615 at 752.949 kb on - strand, within IAI47_03615 at 752.949 kb on - strand, within IAI47_03615 at 752.949 kb on - strand, within IAI47_03615 at 752.986 kb on - strand, within IAI47_03615 at 753.029 kb on + strand, within IAI47_03615 at 753.029 kb on + strand, within IAI47_03615 at 753.029 kb on + strand, within IAI47_03615 at 753.030 kb on - strand, within IAI47_03615 at 753.030 kb on - strand, within IAI47_03615 at 753.038 kb on + strand, within IAI47_03615 at 753.038 kb on + strand, within IAI47_03615 at 753.038 kb on + strand, within IAI47_03615 at 753.039 kb on - strand, within IAI47_03615 at 753.039 kb on - strand, within IAI47_03615 at 753.039 kb on - strand, within IAI47_03615 at 753.219 kb on - strand, within IAI47_03615 at 753.219 kb on - strand, within IAI47_03615 at 753.279 kb on + strand at 753.283 kb on - strand at 753.297 kb on + strand at 753.297 kb on + strand at 753.297 kb on + strand at 753.298 kb on - strand at 753.298 kb on - strand at 753.298 kb on - strand at 753.298 kb on - strand at 753.299 kb on - strand at 753.321 kb on + strand at 753.321 kb on + strand at 753.321 kb on + strand at 753.322 kb on - strand at 753.328 kb on + strand at 753.328 kb on + strand at 753.328 kb on + strand at 753.328 kb on + strand at 753.328 kb on + strand at 753.329 kb on - strand at 753.329 kb on - strand at 753.329 kb on - strand at 753.329 kb on - strand at 753.329 kb on - strand at 753.331 kb on + strand at 753.331 kb on + strand at 753.331 kb on + strand at 753.331 kb on + strand at 753.331 kb on + strand at 753.332 kb on - strand at 753.332 kb on - strand at 753.332 kb on - strand at 753.332 kb on - strand at 753.409 kb on + strand at 753.410 kb on - strand at 753.416 kb on + strand at 753.417 kb on - strand at 753.450 kb on + strand at 753.481 kb on + strand at 753.481 kb on + strand at 753.481 kb on + strand at 753.481 kb on + strand at 753.482 kb on - strand at 753.482 kb on - strand at 753.482 kb on - strand at 753.482 kb on - strand at 753.482 kb on - strand at 753.482 kb on - strand at 753.484 kb on + strand at 753.485 kb on - strand at 753.485 kb on - strand at 753.511 kb on - strand, within IAI47_03620 at 753.646 kb on + strand, within IAI47_03620 at 753.646 kb on + strand, within IAI47_03620 at 753.714 kb on + strand, within IAI47_03620 at 753.714 kb on + strand, within IAI47_03620 at 753.714 kb on + strand, within IAI47_03620 at 753.715 kb on - strand, within IAI47_03620 at 753.715 kb on - strand, within IAI47_03620 at 753.715 kb on - strand, within IAI47_03620 at 753.715 kb on - strand, within IAI47_03620 at 753.715 kb on - strand, within IAI47_03620 at 753.797 kb on - strand, within IAI47_03620 at 753.797 kb on - strand, within IAI47_03620 at 753.825 kb on + strand, within IAI47_03620 at 753.825 kb on + strand, within IAI47_03620 at 753.825 kb on + strand, within IAI47_03620 at 753.825 kb on + strand, within IAI47_03620 at 753.825 kb on + strand, within IAI47_03620 at 753.825 kb on + strand, within IAI47_03620 at 753.825 kb on + strand, within IAI47_03620 at 753.825 kb on + strand, within IAI47_03620 at 753.825 kb on + strand, within IAI47_03620 at 753.825 kb on + strand, within IAI47_03620 at 753.825 kb on + strand, within IAI47_03620 at 753.826 kb on - strand, within IAI47_03620 at 753.826 kb on - strand, within IAI47_03620 at 753.826 kb on - strand, within IAI47_03620 at 753.826 kb on - strand, within IAI47_03620 at 753.826 kb on - strand, within IAI47_03620 at 753.826 kb on - strand, within IAI47_03620 at 753.826 kb on - strand, within IAI47_03620 at 753.826 kb on - strand, within IAI47_03620 at 753.826 kb on - strand, within IAI47_03620 at 753.826 kb on - strand, within IAI47_03620 at 753.826 kb on - strand, within IAI47_03620 at 753.831 kb on + strand, within IAI47_03620 at 753.831 kb on + strand, within IAI47_03620 at 753.901 kb on + strand, within IAI47_03620 at 753.913 kb on + strand, within IAI47_03620 at 753.913 kb on + strand, within IAI47_03620 at 753.913 kb on + strand, within IAI47_03620 at 753.913 kb on + strand, within IAI47_03620 at 753.913 kb on + strand, within IAI47_03620 at 753.913 kb on + strand, within IAI47_03620 at 753.913 kb on + strand, within IAI47_03620 at 753.913 kb on + strand, within IAI47_03620 at 753.913 kb on + strand, within IAI47_03620 at 753.913 kb on + strand, within IAI47_03620 at 753.914 kb on - strand, within IAI47_03620 at 753.914 kb on - strand, within IAI47_03620 at 753.914 kb on - strand, within IAI47_03620 at 753.914 kb on - strand, within IAI47_03620 at 753.914 kb on - strand, within IAI47_03620 at 753.914 kb on - strand, within IAI47_03620 at 753.955 kb on + strand, within IAI47_03620 at 753.961 kb on + strand, within IAI47_03620 at 753.962 kb on - strand, within IAI47_03620 at 753.962 kb on - strand, within IAI47_03620 at 754.008 kb on + strand, within IAI47_03620 at 754.009 kb on - strand, within IAI47_03620 at 754.009 kb on - strand, within IAI47_03620 at 754.009 kb on - strand, within IAI47_03620 at 754.009 kb on - strand, within IAI47_03620 at 754.063 kb on + strand, within IAI47_03620 at 754.063 kb on + strand, within IAI47_03620 at 754.063 kb on + strand, within IAI47_03620 at 754.064 kb on - strand, within IAI47_03620 at 754.064 kb on - strand, within IAI47_03620 at 754.064 kb on - strand, within IAI47_03620 at 754.064 kb on - strand, within IAI47_03620 at 754.127 kb on + strand at 754.127 kb on + strand at 754.127 kb on + strand at 754.127 kb on + strand at 754.127 kb on + strand at 754.127 kb on + strand at 754.128 kb on - strand at 754.128 kb on - strand at 754.138 kb on + strand at 754.138 kb on + strand at 754.138 kb on + strand at 754.138 kb on + strand at 754.139 kb on - strand at 754.139 kb on - strand at 754.139 kb on - strand at 754.146 kb on + strand at 754.147 kb on - strand at 754.147 kb on - strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.199 kb on + strand at 754.200 kb on - strand at 754.200 kb on - strand at 754.200 kb on - strand at 754.200 kb on - strand at 754.200 kb on - strand at 754.200 kb on - strand at 754.204 kb on + strand at 754.205 kb on - strand at 754.205 kb on - strand at 754.205 kb on - strand at 754.205 kb on - strand at 754.242 kb on + strand at 754.242 kb on + strand at 754.242 kb on + strand at 754.242 kb on + strand at 754.243 kb on - strand at 754.243 kb on - strand at 754.243 kb on - strand at 754.243 kb on - strand at 754.243 kb on - strand at 754.311 kb on + strand, within IAI47_03625 at 754.311 kb on + strand, within IAI47_03625 at 754.311 kb on + strand, within IAI47_03625 at 754.312 kb on - strand, within IAI47_03625 at 754.368 kb on + strand, within IAI47_03625 at 754.369 kb on - strand, within IAI47_03625 at 754.383 kb on + strand, within IAI47_03625 at 754.383 kb on + strand, within IAI47_03625 at 754.383 kb on + strand, within IAI47_03625 at 754.383 kb on + strand, within IAI47_03625 at 754.384 kb on - strand, within IAI47_03625 at 754.384 kb on - strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.389 kb on + strand, within IAI47_03625 at 754.390 kb on - strand, within IAI47_03625 at 754.390 kb on - strand, within IAI47_03625 at 754.390 kb on - strand, within IAI47_03625 at 754.449 kb on + strand, within IAI47_03625 at 754.473 kb on + strand, within IAI47_03625 at 754.504 kb on - strand, within IAI47_03625 at 754.678 kb on + strand, within IAI47_03625 at 754.678 kb on + strand, within IAI47_03625 at 754.678 kb on + strand, within IAI47_03625 at 754.678 kb on + strand, within IAI47_03625 at 754.679 kb on - strand, within IAI47_03625 at 754.679 kb on - strand, within IAI47_03625 at 754.679 kb on - strand, within IAI47_03625 at 754.714 kb on - strand, within IAI47_03625 at 754.765 kb on + strand, within IAI47_03625 at 754.776 kb on + strand, within IAI47_03625 at 754.776 kb on + strand, within IAI47_03625 at 754.837 kb on + strand, within IAI47_03625 at 754.837 kb on + strand, within IAI47_03625 at 754.837 kb on + strand, within IAI47_03625 at 754.838 kb on - strand, within IAI47_03625 at 754.848 kb on + strand, within IAI47_03625 at 754.848 kb on + strand, within IAI47_03625 at 754.848 kb on + strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.849 kb on - strand, within IAI47_03625 at 754.852 kb on + strand at 754.852 kb on + strand at 754.852 kb on + strand at 754.852 kb on + strand at 754.852 kb on + strand at 754.852 kb on + strand at 754.852 kb on + strand at 754.853 kb on - strand at 754.853 kb on - strand at 754.853 kb on - strand at 754.853 kb on - strand at 754.853 kb on - strand at 754.907 kb on + strand at 754.907 kb on + strand at 754.907 kb on + strand at 754.908 kb on - strand at 754.921 kb on + strand at 754.921 kb on + strand at 754.921 kb on + strand at 754.921 kb on + strand at 754.921 kb on + strand at 754.922 kb on - strand at 754.922 kb on - strand at 754.922 kb on - strand at 754.922 kb on - strand at 754.922 kb on - strand at 754.922 kb on - strand at 754.922 kb on - strand at 754.933 kb on + strand at 754.933 kb on + strand at 754.933 kb on + strand at 754.933 kb on + strand at 754.933 kb on + strand at 754.934 kb on - strand at 754.934 kb on - strand at 754.937 kb on + strand at 754.937 kb on + strand at 754.937 kb on + strand at 754.937 kb on + strand at 754.938 kb on - strand at 754.938 kb on - strand at 754.940 kb on + strand at 754.940 kb on + strand at 754.942 kb on - strand at 754.961 kb on - strand at 754.975 kb on + strand at 754.976 kb on - strand at 754.976 kb on - strand at 754.976 kb on - strand at 754.976 kb on - strand at 755.008 kb on + strand at 755.009 kb on - strand at 755.052 kb on + strand, within IAI47_03630 at 755.052 kb on + strand, within IAI47_03630 at 755.053 kb on - strand, within IAI47_03630 at 755.053 kb on - strand, within IAI47_03630 at 755.053 kb on - strand, within IAI47_03630 at 755.053 kb on - strand, within IAI47_03630 at 755.124 kb on + strand, within IAI47_03630
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 752,458 + +0.0 752,458 + +1.0 752,458 + +1.3 752,458 + -1.0 752,459 - +0.3 752,459 - +0.8 752,459 - -0.2 752,482 - IAI47_03615 0.10 +0.3 752,482 - IAI47_03615 0.10 -1.2 752,482 - IAI47_03615 0.10 +0.2 752,496 + IAI47_03615 0.12 +0.0 752,497 - IAI47_03615 0.12 -0.6 752,587 + IAI47_03615 0.22 -0.1 752,587 + IAI47_03615 0.22 -0.4 752,667 - IAI47_03615 0.30 -0.7 752,667 - IAI47_03615 0.30 -1.8 752,729 + IAI47_03615 0.37 -2.3 752,729 + IAI47_03615 0.37 -1.3 752,729 + IAI47_03615 0.37 -0.7 752,729 + IAI47_03615 0.37 -1.3 752,729 + IAI47_03615 0.37 -1.4 752,730 - IAI47_03615 0.37 -0.9 752,730 - IAI47_03615 0.37 +0.1 752,794 - IAI47_03615 0.43 -1.0 752,794 - IAI47_03615 0.43 +0.4 752,794 - IAI47_03615 0.43 +0.5 752,821 - IAI47_03615 0.46 +0.0 752,835 + IAI47_03615 0.48 +0.7 752,835 + IAI47_03615 0.48 -1.6 752,835 + IAI47_03615 0.48 -0.6 752,836 - IAI47_03615 0.48 +0.4 752,836 - IAI47_03615 0.48 -1.2 752,836 - IAI47_03615 0.48 -0.3 752,859 + IAI47_03615 0.50 +0.0 752,859 + IAI47_03615 0.50 +1.0 752,859 + IAI47_03615 0.50 -1.2 752,859 + IAI47_03615 0.50 -1.0 752,860 - IAI47_03615 0.50 -1.0 752,925 + IAI47_03615 0.57 -0.6 752,948 + IAI47_03615 0.60 -0.4 752,949 - IAI47_03615 0.60 -2.4 752,949 - IAI47_03615 0.60 -1.6 752,949 - IAI47_03615 0.60 -0.5 752,949 - IAI47_03615 0.60 -0.3 752,986 - IAI47_03615 0.64 -1.4 753,029 + IAI47_03615 0.68 -0.3 753,029 + IAI47_03615 0.68 -0.2 753,029 + IAI47_03615 0.68 +0.6 753,030 - IAI47_03615 0.68 +0.0 753,030 - IAI47_03615 0.68 -1.4 753,038 + IAI47_03615 0.69 -0.2 753,038 + IAI47_03615 0.69 -1.6 753,038 + IAI47_03615 0.69 -2.0 753,039 - IAI47_03615 0.69 -1.6 753,039 - IAI47_03615 0.69 -1.0 753,039 - IAI47_03615 0.69 -1.3 753,219 - IAI47_03615 0.88 -0.8 753,219 - IAI47_03615 0.88 -0.6 753,279 + -1.6 753,283 - +0.0 753,297 + +0.3 753,297 + -0.3 753,297 + -1.5 753,298 - -1.3 753,298 - -0.8 753,298 - +1.6 753,298 - -1.5 753,299 - -0.7 753,321 + -0.2 753,321 + -2.1 753,321 + +0.2 753,322 - -1.9 753,328 + -0.6 753,328 + -1.9 753,328 + +0.4 753,328 + +0.6 753,328 + -1.8 753,329 - +0.2 753,329 - -0.7 753,329 - +0.0 753,329 - -0.3 753,329 - +0.4 753,331 + +1.3 753,331 + -0.9 753,331 + -0.7 753,331 + +1.4 753,331 + -1.0 753,332 - +0.1 753,332 - -1.2 753,332 - -0.6 753,332 - -0.1 753,409 + +0.3 753,410 - -0.1 753,416 + +0.0 753,417 - +1.2 753,450 + +1.1 753,481 + -1.1 753,481 + -0.6 753,481 + -0.2 753,481 + +0.3 753,482 - +0.9 753,482 - -0.3 753,482 - +0.3 753,482 - -0.8 753,482 - -1.2 753,482 - +2.5 753,484 + -0.7 753,485 - -1.0 753,485 - +1.0 753,511 - IAI47_03620 0.13 -0.6 753,646 + IAI47_03620 0.32 +0.5 753,646 + IAI47_03620 0.32 -0.6 753,714 + IAI47_03620 0.41 +0.7 753,714 + IAI47_03620 0.41 -0.3 753,714 + IAI47_03620 0.41 +1.0 753,715 - IAI47_03620 0.41 +0.7 753,715 - IAI47_03620 0.41 +0.1 753,715 - IAI47_03620 0.41 +0.6 753,715 - IAI47_03620 0.41 -0.3 753,715 - IAI47_03620 0.41 +0.9 753,797 - IAI47_03620 0.52 +0.1 753,797 - IAI47_03620 0.52 -0.6 753,825 + IAI47_03620 0.56 +0.4 753,825 + IAI47_03620 0.56 +1.8 753,825 + IAI47_03620 0.56 +0.6 753,825 + IAI47_03620 0.56 -0.6 753,825 + IAI47_03620 0.56 +0.3 753,825 + IAI47_03620 0.56 -2.7 753,825 + IAI47_03620 0.56 +1.3 753,825 + IAI47_03620 0.56 -0.7 753,825 + IAI47_03620 0.56 +0.0 753,825 + IAI47_03620 0.56 +0.1 753,825 + IAI47_03620 0.56 -0.4 753,826 - IAI47_03620 0.56 -0.9 753,826 - IAI47_03620 0.56 -0.1 753,826 - IAI47_03620 0.56 -0.4 753,826 - IAI47_03620 0.56 -0.6 753,826 - IAI47_03620 0.56 +0.1 753,826 - IAI47_03620 0.56 -0.8 753,826 - IAI47_03620 0.56 +0.6 753,826 - IAI47_03620 0.56 +0.4 753,826 - IAI47_03620 0.56 -0.2 753,826 - IAI47_03620 0.56 -0.2 753,826 - IAI47_03620 0.56 +0.5 753,831 + IAI47_03620 0.57 +0.3 753,831 + IAI47_03620 0.57 -0.2 753,901 + IAI47_03620 0.66 +2.8 753,913 + IAI47_03620 0.68 -0.4 753,913 + IAI47_03620 0.68 +0.3 753,913 + IAI47_03620 0.68 +0.7 753,913 + IAI47_03620 0.68 +0.4 753,913 + IAI47_03620 0.68 +1.4 753,913 + IAI47_03620 0.68 +0.9 753,913 + IAI47_03620 0.68 -0.4 753,913 + IAI47_03620 0.68 +0.0 753,913 + IAI47_03620 0.68 +1.3 753,913 + IAI47_03620 0.68 -0.6 753,914 - IAI47_03620 0.68 +0.5 753,914 - IAI47_03620 0.68 -1.0 753,914 - IAI47_03620 0.68 +0.4 753,914 - IAI47_03620 0.68 +0.9 753,914 - IAI47_03620 0.68 +0.3 753,914 - IAI47_03620 0.68 +0.0 753,955 + IAI47_03620 0.74 +0.5 753,961 + IAI47_03620 0.75 +0.7 753,962 - IAI47_03620 0.75 +0.1 753,962 - IAI47_03620 0.75 +0.6 754,008 + IAI47_03620 0.81 -1.3 754,009 - IAI47_03620 0.81 +1.1 754,009 - IAI47_03620 0.81 +0.3 754,009 - IAI47_03620 0.81 +1.0 754,009 - IAI47_03620 0.81 -1.3 754,063 + IAI47_03620 0.89 -1.3 754,063 + IAI47_03620 0.89 +0.7 754,063 + IAI47_03620 0.89 +0.1 754,064 - IAI47_03620 0.89 +0.7 754,064 - IAI47_03620 0.89 -0.6 754,064 - IAI47_03620 0.89 +0.8 754,064 - IAI47_03620 0.89 +0.7 754,127 + +0.7 754,127 + -0.7 754,127 + +3.2 754,127 + +1.0 754,127 + +0.5 754,127 + -0.2 754,128 - -0.5 754,128 - +1.3 754,138 + +1.6 754,138 + +0.5 754,138 + +0.8 754,138 + +0.2 754,139 - +1.8 754,139 - +0.6 754,139 - -0.8 754,146 + +0.0 754,147 - -1.1 754,147 - -0.6 754,199 + -1.1 754,199 + +1.4 754,199 + +2.0 754,199 + +1.0 754,199 + +2.6 754,199 + +0.5 754,199 + -0.4 754,199 + +0.0 754,199 + +1.2 754,199 + +0.6 754,199 + +0.1 754,199 + +0.1 754,200 - +0.1 754,200 - +0.1 754,200 - +0.5 754,200 - +1.1 754,200 - -0.2 754,200 - +0.8 754,204 + -0.2 754,205 - 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Or see this region's nucleotide sequence