Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03260 and IAI47_03265 are separated by 25 nucleotides IAI47_03265 and IAI47_03270 are separated by 46 nucleotides IAI47_03270 and IAI47_03275 are separated by 543 nucleotides
IAI47_03260: IAI47_03260 - molecular chaperone, at 677,184 to 677,882
_03260
IAI47_03265: IAI47_03265 - spore coat protein U domain-containing protein, at 677,908 to 678,399
_03265
IAI47_03270: IAI47_03270 - spore coat protein U domain-containing protein, at 678,446 to 679,015
_03270
IAI47_03275: IAI47_03275 - EAL domain-containing protein, at 679,559 to 681,643
_03275
Position (kb) 678
679
680 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 677.455 kb on + strand, within IAI47_03260 at 677.455 kb on + strand, within IAI47_03260 at 677.456 kb on - strand, within IAI47_03260 at 677.477 kb on - strand, within IAI47_03260 at 677.672 kb on - strand, within IAI47_03260 at 677.672 kb on - strand, within IAI47_03260 at 677.672 kb on - strand, within IAI47_03260 at 677.780 kb on + strand, within IAI47_03260 at 677.780 kb on + strand, within IAI47_03260 at 677.781 kb on - strand, within IAI47_03260 at 677.781 kb on - strand, within IAI47_03260 at 677.796 kb on - strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.803 kb on - strand, within IAI47_03260 at 677.803 kb on - strand, within IAI47_03260 at 677.803 kb on - strand, within IAI47_03260 at 677.803 kb on - strand, within IAI47_03260 at 677.803 kb on - strand, within IAI47_03260 at 677.803 kb on - strand, within IAI47_03260 at 677.817 kb on - strand at 677.838 kb on + strand at 677.839 kb on - strand at 677.850 kb on + strand at 677.850 kb on + strand at 677.850 kb on + strand at 677.850 kb on + strand at 677.851 kb on - strand at 677.851 kb on - strand at 677.851 kb on - strand at 677.888 kb on + strand at 677.888 kb on + strand at 677.888 kb on + strand at 677.889 kb on - strand at 677.889 kb on - strand at 677.889 kb on - strand at 677.899 kb on + strand at 677.899 kb on + strand at 677.901 kb on + strand at 677.901 kb on + strand at 677.901 kb on + strand at 677.901 kb on + strand at 677.901 kb on + strand at 677.902 kb on - strand at 677.902 kb on - strand at 677.934 kb on + strand at 677.940 kb on + strand at 677.941 kb on - strand at 677.941 kb on - strand at 677.943 kb on - strand at 677.943 kb on - strand at 677.984 kb on + strand, within IAI47_03265 at 677.984 kb on + strand, within IAI47_03265 at 677.984 kb on + strand, within IAI47_03265 at 677.984 kb on + strand, within IAI47_03265 at 677.984 kb on + strand, within IAI47_03265 at 677.984 kb on + strand, within IAI47_03265 at 677.985 kb on - strand, within IAI47_03265 at 677.985 kb on - strand, within IAI47_03265 at 677.985 kb on - strand, within IAI47_03265 at 677.985 kb on - strand, within IAI47_03265 at 677.997 kb on + strand, within IAI47_03265 at 677.997 kb on + strand, within IAI47_03265 at 677.998 kb on - strand, within IAI47_03265 at 677.998 kb on - strand, within IAI47_03265 at 677.998 kb on - strand, within IAI47_03265 at 678.003 kb on + strand, within IAI47_03265 at 678.003 kb on + strand, within IAI47_03265 at 678.004 kb on - strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.016 kb on - strand, within IAI47_03265 at 678.016 kb on - strand, within IAI47_03265 at 678.016 kb on - strand, within IAI47_03265 at 678.016 kb on - strand, within IAI47_03265 at 678.016 kb on - strand, within IAI47_03265 at 678.016 kb on - strand, within IAI47_03265 at 678.017 kb on + strand, within IAI47_03265 at 678.017 kb on + strand, within IAI47_03265 at 678.017 kb on + strand, within IAI47_03265 at 678.017 kb on + strand, within IAI47_03265 at 678.018 kb on - strand, within IAI47_03265 at 678.018 kb on - strand, within IAI47_03265 at 678.018 kb on - strand, within IAI47_03265 at 678.018 kb on - strand, within IAI47_03265 at 678.018 kb on - strand, within IAI47_03265 at 678.069 kb on + strand, within IAI47_03265 at 678.070 kb on - strand, within IAI47_03265 at 678.070 kb on - strand, within IAI47_03265 at 678.070 kb on - strand, within IAI47_03265 at 678.072 kb on + strand, within IAI47_03265 at 678.072 kb on + strand, within IAI47_03265 at 678.073 kb on - strand, within IAI47_03265 at 678.073 kb on - strand, within IAI47_03265 at 678.073 kb on - strand, within IAI47_03265 at 678.073 kb on - strand, within IAI47_03265 at 678.081 kb on + strand, within IAI47_03265 at 678.081 kb on + strand, within IAI47_03265 at 678.081 kb on + strand, within IAI47_03265 at 678.081 kb on + strand, within IAI47_03265 at 678.081 kb on + strand, within IAI47_03265 at 678.082 kb on - strand, within IAI47_03265 at 678.082 kb on - strand, within IAI47_03265 at 678.083 kb on + strand, within IAI47_03265 at 678.083 kb on + strand, within IAI47_03265 at 678.084 kb on - strand, within IAI47_03265 at 678.084 kb on - strand, within IAI47_03265 at 678.094 kb on - strand, within IAI47_03265 at 678.151 kb on - strand, within IAI47_03265 at 678.151 kb on - strand, within IAI47_03265 at 678.151 kb on - strand, within IAI47_03265 at 678.193 kb on + strand, within IAI47_03265 at 678.193 kb on + strand, within IAI47_03265 at 678.194 kb on - strand, within IAI47_03265 at 678.201 kb on + strand, within IAI47_03265 at 678.202 kb on - strand, within IAI47_03265 at 678.261 kb on + strand, within IAI47_03265 at 678.261 kb on + strand, within IAI47_03265 at 678.262 kb on - strand, within IAI47_03265 at 678.262 kb on - strand, within IAI47_03265 at 678.262 kb on - strand, within IAI47_03265 at 678.262 kb on - strand, within IAI47_03265 at 678.262 kb on - strand, within IAI47_03265 at 678.295 kb on + strand, within IAI47_03265 at 678.296 kb on - strand, within IAI47_03265 at 678.296 kb on - strand, within IAI47_03265 at 678.298 kb on + strand, within IAI47_03265 at 678.298 kb on + strand, within IAI47_03265 at 678.298 kb on + strand, within IAI47_03265 at 678.299 kb on - strand, within IAI47_03265 at 678.299 kb on - strand, within IAI47_03265 at 678.299 kb on - strand, within IAI47_03265 at 678.299 kb on - strand, within IAI47_03265 at 678.299 kb on - strand, within IAI47_03265 at 678.370 kb on + strand at 678.370 kb on + strand at 678.370 kb on + strand at 678.370 kb on + strand at 678.371 kb on - strand at 678.371 kb on - strand at 678.371 kb on - strand at 678.371 kb on - strand at 678.427 kb on + strand at 678.427 kb on + strand at 678.427 kb on + strand at 678.427 kb on + strand at 678.427 kb on + strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.431 kb on + strand at 678.431 kb on + strand at 678.431 kb on + strand at 678.431 kb on + strand at 678.431 kb on + strand at 678.431 kb on + strand at 678.431 kb on + strand at 678.432 kb on - strand at 678.447 kb on + strand at 678.448 kb on - strand at 678.448 kb on - strand at 678.448 kb on - strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.451 kb on - strand at 678.451 kb on - strand at 678.451 kb on - strand at 678.451 kb on - strand at 678.467 kb on - strand at 678.467 kb on - strand at 678.472 kb on + strand at 678.479 kb on - strand at 678.480 kb on + strand at 678.480 kb on + strand at 678.480 kb on + strand at 678.481 kb on - strand at 678.481 kb on - strand at 678.481 kb on - strand at 678.481 kb on - strand at 678.481 kb on - strand at 678.506 kb on - strand, within IAI47_03270 at 678.531 kb on + strand, within IAI47_03270 at 678.532 kb on - strand, within IAI47_03270 at 678.532 kb on - strand, within IAI47_03270 at 678.540 kb on + strand, within IAI47_03270 at 678.540 kb on + strand, within IAI47_03270 at 678.541 kb on - strand, within IAI47_03270 at 678.541 kb on - strand, within IAI47_03270 at 678.541 kb on - strand, within IAI47_03270 at 678.541 kb on - strand, within IAI47_03270 at 678.589 kb on + strand, within IAI47_03270 at 678.589 kb on + strand, within IAI47_03270 at 678.590 kb on - strand, within IAI47_03270 at 678.590 kb on - strand, within IAI47_03270 at 678.590 kb on - strand, within IAI47_03270 at 678.610 kb on + strand, within IAI47_03270 at 678.611 kb on - strand, within IAI47_03270 at 678.627 kb on + strand, within IAI47_03270 at 678.628 kb on - strand, within IAI47_03270 at 678.635 kb on - strand, within IAI47_03270 at 678.635 kb on - strand, within IAI47_03270 at 678.635 kb on - strand, within IAI47_03270 at 678.636 kb on + strand, within IAI47_03270 at 678.637 kb on - strand, within IAI47_03270 at 678.637 kb on - strand, within IAI47_03270 at 678.637 kb on - strand, within IAI47_03270 at 678.637 kb on - strand, within IAI47_03270 at 678.655 kb on + strand, within IAI47_03270 at 678.656 kb on - strand, within IAI47_03270 at 678.676 kb on - strand, within IAI47_03270 at 678.676 kb on - strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.703 kb on - strand, within IAI47_03270 at 678.703 kb on - strand, within IAI47_03270 at 678.703 kb on - strand, within IAI47_03270 at 678.703 kb on - strand, within IAI47_03270 at 678.721 kb on + strand, within IAI47_03270 at 678.721 kb on + strand, within IAI47_03270 at 678.721 kb on + strand, within IAI47_03270 at 678.722 kb on - strand, within IAI47_03270 at 678.722 kb on - strand, within IAI47_03270 at 678.722 kb on - strand, within IAI47_03270 at 678.722 kb on - strand, within IAI47_03270 at 678.745 kb on + strand, within IAI47_03270 at 678.745 kb on + strand, within IAI47_03270 at 678.745 kb on + strand, within IAI47_03270 at 678.746 kb on - strand, within IAI47_03270 at 678.746 kb on - strand, within IAI47_03270 at 678.746 kb on - strand, within IAI47_03270 at 678.746 kb on - strand, within IAI47_03270 at 678.746 kb on - strand, within IAI47_03270 at 678.747 kb on + strand, within IAI47_03270 at 678.748 kb on - strand, within IAI47_03270 at 678.748 kb on - strand, within IAI47_03270 at 678.748 kb on - strand, within IAI47_03270 at 678.778 kb on + strand, within IAI47_03270 at 678.779 kb on - strand, within IAI47_03270 at 678.779 kb on - strand, within IAI47_03270 at 678.874 kb on + strand, within IAI47_03270 at 678.874 kb on + strand, within IAI47_03270 at 678.875 kb on - strand, within IAI47_03270 at 678.890 kb on + strand, within IAI47_03270 at 678.890 kb on + strand, within IAI47_03270 at 678.977 kb on + strand at 678.978 kb on - strand at 678.978 kb on - strand at 678.978 kb on - strand at 678.978 kb on - strand at 678.978 kb on - strand at 678.978 kb on - strand at 679.015 kb on + strand at 679.016 kb on - strand at 679.065 kb on + strand at 679.065 kb on + strand at 679.066 kb on - strand at 679.066 kb on - strand at 679.066 kb on - strand at 679.138 kb on + strand at 679.139 kb on - strand at 679.144 kb on + strand at 679.144 kb on + strand at 679.158 kb on + strand at 679.158 kb on + strand at 679.158 kb on + strand at 679.159 kb on - strand at 679.159 kb on - strand at 679.159 kb on - strand at 679.163 kb on + strand at 679.170 kb on - strand at 679.174 kb on - strand at 679.178 kb on + strand at 679.187 kb on + strand at 679.237 kb on + strand at 679.237 kb on + strand at 679.237 kb on + strand at 679.238 kb on - strand at 679.257 kb on - strand at 679.269 kb on + strand at 679.270 kb on - strand at 679.336 kb on + strand at 679.336 kb on + strand at 679.336 kb on + strand at 679.336 kb on + strand at 679.337 kb on - strand at 679.337 kb on - strand at 679.337 kb on - strand at 679.347 kb on - strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.360 kb on - strand at 679.360 kb on - strand at 679.360 kb on - strand at 679.362 kb on + strand at 679.396 kb on + strand at 679.396 kb on + strand at 679.397 kb on - strand at 679.397 kb on - strand at 679.397 kb on - strand at 679.409 kb on + strand at 679.410 kb on - strand at 679.438 kb on + strand at 679.505 kb on + strand at 679.506 kb on - strand at 679.506 kb on - strand at 679.518 kb on + strand at 679.519 kb on - strand at 679.519 kb on - strand at 679.616 kb on - strand at 679.616 kb on - strand at 679.616 kb on - strand at 679.627 kb on + strand at 679.627 kb on + strand at 679.627 kb on + strand at 679.627 kb on + strand at 679.627 kb on + strand at 679.628 kb on - strand at 679.628 kb on - strand at 679.640 kb on - strand at 679.744 kb on + strand at 679.744 kb on + strand at 679.744 kb on + strand at 679.744 kb on + strand at 679.744 kb on + strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.778 kb on + strand, within IAI47_03275 at 679.797 kb on + strand, within IAI47_03275 at 679.797 kb on + strand, within IAI47_03275 at 679.797 kb on + strand, within IAI47_03275 at 679.851 kb on + strand, within IAI47_03275 at 679.851 kb on + strand, within IAI47_03275 at 679.851 kb on + strand, within IAI47_03275 at 679.852 kb on - strand, within IAI47_03275 at 679.852 kb on - strand, within IAI47_03275 at 679.928 kb on + strand, within IAI47_03275 at 679.928 kb on + strand, within IAI47_03275 at 679.929 kb on - strand, within IAI47_03275 at 679.929 kb on - strand, within IAI47_03275 at 679.929 kb on - strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.940 kb on + strand, within IAI47_03275 at 679.941 kb on - strand, within IAI47_03275 at 679.941 kb on - strand, within IAI47_03275 at 679.941 kb on - strand, within IAI47_03275 at 679.941 kb on - strand, within IAI47_03275 at 679.941 kb on - strand, within IAI47_03275 at 679.941 kb on - strand, within IAI47_03275 at 679.941 kb on - strand, within IAI47_03275 at 679.941 kb on - strand, within IAI47_03275 at 679.941 kb on - strand, within IAI47_03275 at 679.941 kb on - strand, within IAI47_03275 at 679.941 kb on - strand, within IAI47_03275
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 677,455 + IAI47_03260 0.39 -0.7 677,455 + IAI47_03260 0.39 -1.7 677,456 - IAI47_03260 0.39 +0.7 677,477 - IAI47_03260 0.42 -0.6 677,672 - IAI47_03260 0.70 +2.0 677,672 - IAI47_03260 0.70 +0.6 677,672 - IAI47_03260 0.70 -0.4 677,780 + IAI47_03260 0.85 +0.6 677,780 + IAI47_03260 0.85 +1.9 677,781 - IAI47_03260 0.85 +3.7 677,781 - IAI47_03260 0.85 +0.7 677,796 - IAI47_03260 0.88 +1.0 677,802 + IAI47_03260 0.88 +1.1 677,802 + IAI47_03260 0.88 +0.0 677,802 + IAI47_03260 0.88 +2.0 677,802 + IAI47_03260 0.88 -0.4 677,802 + IAI47_03260 0.88 -1.0 677,802 + IAI47_03260 0.88 +0.6 677,802 + IAI47_03260 0.88 +0.7 677,802 + IAI47_03260 0.88 -2.2 677,803 - IAI47_03260 0.89 +0.4 677,803 - IAI47_03260 0.89 -0.2 677,803 - IAI47_03260 0.89 -1.1 677,803 - IAI47_03260 0.89 -0.7 677,803 - IAI47_03260 0.89 +0.5 677,803 - IAI47_03260 0.89 -1.0 677,817 - +0.5 677,838 + +0.3 677,839 - -0.4 677,850 + +3.3 677,850 + +1.0 677,850 + -1.8 677,850 + +0.6 677,851 - +1.0 677,851 - +0.3 677,851 - -0.2 677,888 + -0.2 677,888 + -0.4 677,888 + +0.0 677,889 - +1.4 677,889 - +0.2 677,889 - +0.7 677,899 + +1.6 677,899 + +0.0 677,901 + +1.2 677,901 + -0.3 677,901 + +0.4 677,901 + +0.8 677,901 + -0.6 677,902 - -0.3 677,902 - -0.3 677,934 + -0.2 677,940 + -0.2 677,941 - +0.4 677,941 - +0.3 677,943 - +1.0 677,943 - +0.4 677,984 + IAI47_03265 0.15 +1.0 677,984 + IAI47_03265 0.15 +1.0 677,984 + IAI47_03265 0.15 +0.0 677,984 + IAI47_03265 0.15 -0.1 677,984 + IAI47_03265 0.15 -1.3 677,984 + IAI47_03265 0.15 -0.3 677,985 - IAI47_03265 0.16 -0.6 677,985 - IAI47_03265 0.16 -1.6 677,985 - IAI47_03265 0.16 +3.7 677,985 - IAI47_03265 0.16 -0.4 677,997 + IAI47_03265 0.18 +0.6 677,997 + IAI47_03265 0.18 +3.3 677,998 - IAI47_03265 0.18 -1.0 677,998 - IAI47_03265 0.18 -0.3 677,998 - IAI47_03265 0.18 +0.2 678,003 + IAI47_03265 0.19 +1.0 678,003 + IAI47_03265 0.19 -1.0 678,004 - IAI47_03265 0.20 +1.0 678,015 + IAI47_03265 0.22 -0.5 678,015 + IAI47_03265 0.22 +0.0 678,015 + IAI47_03265 0.22 -0.4 678,015 + IAI47_03265 0.22 -0.1 678,015 + IAI47_03265 0.22 +1.0 678,015 + IAI47_03265 0.22 +0.8 678,015 + IAI47_03265 0.22 -0.1 678,015 + IAI47_03265 0.22 -0.0 678,015 + IAI47_03265 0.22 +0.0 678,015 + IAI47_03265 0.22 -0.6 678,016 - IAI47_03265 0.22 +0.3 678,016 - IAI47_03265 0.22 +0.4 678,016 - IAI47_03265 0.22 -1.0 678,016 - IAI47_03265 0.22 +0.3 678,016 - IAI47_03265 0.22 +0.7 678,016 - IAI47_03265 0.22 +0.5 678,017 + IAI47_03265 0.22 +0.0 678,017 + IAI47_03265 0.22 -0.3 678,017 + IAI47_03265 0.22 -0.1 678,017 + IAI47_03265 0.22 -0.9 678,018 - IAI47_03265 0.22 +0.0 678,018 - IAI47_03265 0.22 -0.8 678,018 - IAI47_03265 0.22 +1.3 678,018 - IAI47_03265 0.22 -1.2 678,018 - IAI47_03265 0.22 +2.6 678,069 + IAI47_03265 0.33 -0.3 678,070 - IAI47_03265 0.33 +0.6 678,070 - IAI47_03265 0.33 +1.3 678,070 - IAI47_03265 0.33 -0.3 678,072 + IAI47_03265 0.33 +0.1 678,072 + IAI47_03265 0.33 -1.6 678,073 - IAI47_03265 0.34 -1.6 678,073 - IAI47_03265 0.34 +0.3 678,073 - IAI47_03265 0.34 -0.3 678,073 - IAI47_03265 0.34 -2.4 678,081 + IAI47_03265 0.35 -0.2 678,081 + IAI47_03265 0.35 -0.2 678,081 + IAI47_03265 0.35 +1.0 678,081 + IAI47_03265 0.35 +0.6 678,081 + IAI47_03265 0.35 +0.2 678,082 - IAI47_03265 0.35 +0.1 678,082 - IAI47_03265 0.35 -0.6 678,083 + IAI47_03265 0.36 +2.3 678,083 + IAI47_03265 0.36 -1.9 678,084 - 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IAI47_03275 0.18 +0.4 679,941 - IAI47_03275 0.18 -0.8 679,941 - IAI47_03275 0.18 -0.6 679,941 - IAI47_03275 0.18 +0.7 679,941 - IAI47_03275 0.18 -0.2 679,941 - IAI47_03275 0.18 -0.4 679,941 - IAI47_03275 0.18 -1.0 679,941 - IAI47_03275 0.18 -0.3 679,941 - IAI47_03275 0.18 +0.0 679,941 - IAI47_03275 0.18 -0.4 679,941 - IAI47_03275 0.18 -0.5
Or see this region's nucleotide sequence