Strain Fitness in Pantoea sp. MT58 around IAI47_02280

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02275 and IAI47_02280 are separated by 18 nucleotidesIAI47_02280 and IAI47_02285 are separated by 49 nucleotides IAI47_02275: IAI47_02275 - Trk system potassium transporter TrkA, at 471,364 to 472,740 _02275 IAI47_02280: IAI47_02280 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 472,759 to 474,060 _02280 IAI47_02285: IAI47_02285 - methionyl-tRNA formyltransferase, at 474,110 to 475,054 _02285 Position (kb) 472 473 474 475Strain fitness (log2 ratio) -2 -1 0 1 2at 472.746 kb on - strandat 472.752 kb on - strandat 472.781 kb on - strandat 472.781 kb on - strandat 472.794 kb on - strandat 472.794 kb on - strandat 472.828 kb on + strandat 472.828 kb on + strandat 472.828 kb on + strandat 472.829 kb on - strandat 472.829 kb on - strandat 472.834 kb on + strandat 472.835 kb on - strandat 472.903 kb on + strand, within IAI47_02280at 472.903 kb on + strand, within IAI47_02280at 472.903 kb on + strand, within IAI47_02280at 472.903 kb on + strand, within IAI47_02280at 472.903 kb on + strand, within IAI47_02280at 472.904 kb on - strand, within IAI47_02280at 472.904 kb on - strand, within IAI47_02280at 472.904 kb on - strand, within IAI47_02280at 472.904 kb on - strand, within IAI47_02280at 472.904 kb on - strand, within IAI47_02280at 472.904 kb on - strand, within IAI47_02280at 472.904 kb on - strand, within IAI47_02280at 472.941 kb on + strand, within IAI47_02280at 472.942 kb on - strand, within IAI47_02280at 472.942 kb on - strand, within IAI47_02280at 472.942 kb on - strand, within IAI47_02280at 472.942 kb on - strand, within IAI47_02280at 472.942 kb on - strand, within IAI47_02280at 472.946 kb on + strand, within IAI47_02280at 472.946 kb on + strand, within IAI47_02280at 472.946 kb on + strand, within IAI47_02280at 472.946 kb on + strand, within IAI47_02280at 472.946 kb on + strand, within IAI47_02280at 472.946 kb on + strand, within IAI47_02280at 472.947 kb on - strand, within IAI47_02280at 472.947 kb on - strand, within IAI47_02280at 472.947 kb on - strand, within IAI47_02280at 472.947 kb on - strand, within IAI47_02280at 472.947 kb on - strand, within IAI47_02280at 472.989 kb on + strand, within IAI47_02280at 472.990 kb on - strand, within IAI47_02280at 473.163 kb on + strand, within IAI47_02280at 473.164 kb on - strand, within IAI47_02280at 473.227 kb on + strand, within IAI47_02280at 473.227 kb on + strand, within IAI47_02280at 473.227 kb on + strand, within IAI47_02280at 473.228 kb on - strand, within IAI47_02280at 473.228 kb on - strand, within IAI47_02280at 473.271 kb on + strand, within IAI47_02280at 473.272 kb on - strand, within IAI47_02280at 473.272 kb on - strand, within IAI47_02280at 473.272 kb on - strand, within IAI47_02280at 473.284 kb on - strand, within IAI47_02280at 473.284 kb on - strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.302 kb on + strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.303 kb on - strand, within IAI47_02280at 473.401 kb on + strand, within IAI47_02280at 473.402 kb on - strand, within IAI47_02280at 473.402 kb on - strand, within IAI47_02280at 473.402 kb on - strand, within IAI47_02280at 473.612 kb on - strand, within IAI47_02280at 473.634 kb on - strand, within IAI47_02280at 473.696 kb on - strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.698 kb on + strand, within IAI47_02280at 473.699 kb on - strand, within IAI47_02280at 473.699 kb on - strand, within IAI47_02280at 473.699 kb on - strand, within IAI47_02280at 473.699 kb on - strand, within IAI47_02280at 473.707 kb on + strand, within IAI47_02280at 473.707 kb on + strand, within IAI47_02280at 473.708 kb on - strand, within IAI47_02280at 473.708 kb on - strand, within IAI47_02280at 473.708 kb on - strand, within IAI47_02280at 473.708 kb on - strand, within IAI47_02280at 473.708 kb on - strand, within IAI47_02280at 473.708 kb on - strand, within IAI47_02280at 473.710 kb on + strand, within IAI47_02280at 473.710 kb on + strand, within IAI47_02280at 473.711 kb on - strand, within IAI47_02280at 473.711 kb on - strand, within IAI47_02280at 473.711 kb on - strand, within IAI47_02280at 473.790 kb on + strand, within IAI47_02280at 473.790 kb on + strand, within IAI47_02280at 473.790 kb on + strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.791 kb on - strandat 473.791 kb on - strand, within IAI47_02280at 473.791 kb on - strand, within IAI47_02280at 473.793 kb on - strand, within IAI47_02280at 473.793 kb on - strand, within IAI47_02280at 473.793 kb on - strand, within IAI47_02280at 473.793 kb on - strand, within IAI47_02280at 473.805 kb on - strand, within IAI47_02280at 473.825 kb on + strand, within IAI47_02280at 473.825 kb on + strand, within IAI47_02280at 473.826 kb on - strand, within IAI47_02280at 473.826 kb on - strand, within IAI47_02280at 473.845 kb on - strand, within IAI47_02280at 473.872 kb on - strand, within IAI47_02280at 473.872 kb on - strand, within IAI47_02280at 473.896 kb on + strand, within IAI47_02280at 473.896 kb on + strand, within IAI47_02280at 473.897 kb on - strand, within IAI47_02280at 473.901 kb on + strand, within IAI47_02280at 473.902 kb on - strand, within IAI47_02280at 473.902 kb on - strand, within IAI47_02280at 473.902 kb on - strand, within IAI47_02280at 473.902 kb on - strand, within IAI47_02280at 473.933 kb on - strandat 473.940 kb on + strandat 474.018 kb on + strandat 474.018 kb on + strandat 474.018 kb on + strandat 474.018 kb on + strandat 474.019 kb on - strandat 474.019 kb on - strandat 474.019 kb on - strandat 474.036 kb on + strandat 474.054 kb on + strandat 474.055 kb on - strandat 474.055 kb on - strandat 474.055 kb on - strandat 474.055 kb on - strandat 474.055 kb on - strandat 474.060 kb on + strandat 474.061 kb on - strandat 474.061 kb on - strandat 474.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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472,746 - +0.4
472,752 - -1.1
472,781 - +1.6
472,781 - +0.6
472,794 - +0.2
472,794 - -1.3
472,828 + -0.9
472,828 + +0.4
472,828 + +0.0
472,829 - -1.6
472,829 - +2.2
472,834 + -1.0
472,835 - -1.3
472,903 + IAI47_02280 0.11 +0.4
472,903 + IAI47_02280 0.11 -0.1
472,903 + IAI47_02280 0.11 -0.6
472,903 + IAI47_02280 0.11 -1.1
472,903 + IAI47_02280 0.11 -0.1
472,904 - IAI47_02280 0.11 +0.3
472,904 - IAI47_02280 0.11 -0.8
472,904 - IAI47_02280 0.11 +0.5
472,904 - IAI47_02280 0.11 -0.6
472,904 - IAI47_02280 0.11 -0.8
472,904 - IAI47_02280 0.11 +1.9
472,904 - IAI47_02280 0.11 +0.8
472,941 + IAI47_02280 0.14 +0.6
472,942 - IAI47_02280 0.14 +1.4
472,942 - IAI47_02280 0.14 +0.6
472,942 - IAI47_02280 0.14 -0.4
472,942 - IAI47_02280 0.14 +0.6
472,942 - IAI47_02280 0.14 +0.3
472,946 + IAI47_02280 0.14 -0.1
472,946 + IAI47_02280 0.14 -1.0
472,946 + IAI47_02280 0.14 +0.3
472,946 + IAI47_02280 0.14 -0.4
472,946 + IAI47_02280 0.14 +0.2
472,946 + IAI47_02280 0.14 +0.5
472,947 - IAI47_02280 0.14 +0.4
472,947 - IAI47_02280 0.14 +0.1
472,947 - IAI47_02280 0.14 +0.0
472,947 - IAI47_02280 0.14 +0.0
472,947 - IAI47_02280 0.14 +0.5
472,989 + IAI47_02280 0.18 -0.3
472,990 - IAI47_02280 0.18 -2.1
473,163 + IAI47_02280 0.31 -0.1
473,164 - IAI47_02280 0.31 +1.0
473,227 + IAI47_02280 0.36 +2.0
473,227 + IAI47_02280 0.36 -1.0
473,227 + IAI47_02280 0.36 +0.4
473,228 - IAI47_02280 0.36 -0.7
473,228 - IAI47_02280 0.36 -2.7
473,271 + IAI47_02280 0.39 -1.8
473,272 - IAI47_02280 0.39 -1.0
473,272 - IAI47_02280 0.39 +1.0
473,272 - IAI47_02280 0.39 -0.8
473,284 - IAI47_02280 0.40 -0.2
473,284 - IAI47_02280 0.40 +0.3
473,302 + IAI47_02280 0.42 +0.2
473,302 + IAI47_02280 0.42 +0.3
473,302 + IAI47_02280 0.42 -0.2
473,302 + IAI47_02280 0.42 +0.9
473,302 + IAI47_02280 0.42 -1.0
473,302 + IAI47_02280 0.42 -1.4
473,302 + IAI47_02280 0.42 +0.4
473,303 - IAI47_02280 0.42 -1.9
473,303 - IAI47_02280 0.42 -1.1
473,303 - IAI47_02280 0.42 +2.2
473,303 - IAI47_02280 0.42 -0.6
473,303 - IAI47_02280 0.42 +0.2
473,303 - IAI47_02280 0.42 +0.9
473,303 - IAI47_02280 0.42 -0.8
473,303 - IAI47_02280 0.42 -1.0
473,401 + IAI47_02280 0.49 -0.3
473,402 - IAI47_02280 0.49 +0.7
473,402 - IAI47_02280 0.49 -1.1
473,402 - IAI47_02280 0.49 -1.5
473,612 - IAI47_02280 0.66 +1.0
473,634 - IAI47_02280 0.67 +0.9
473,696 - IAI47_02280 0.72 +0.0
473,698 + IAI47_02280 0.72 -1.1
473,698 + IAI47_02280 0.72 -0.6
473,698 + IAI47_02280 0.72 -1.2
473,698 + IAI47_02280 0.72 +0.0
473,698 + IAI47_02280 0.72 -0.6
473,698 + IAI47_02280 0.72 -1.1
473,698 + IAI47_02280 0.72 -1.3
473,698 + IAI47_02280 0.72 +1.0
473,699 - IAI47_02280 0.72 +1.0
473,699 - IAI47_02280 0.72 +1.9
473,699 - IAI47_02280 0.72 -2.7
473,699 - IAI47_02280 0.72 -1.9
473,707 + IAI47_02280 0.73 +0.0
473,707 + IAI47_02280 0.73 -0.5
473,708 - IAI47_02280 0.73 +0.2
473,708 - IAI47_02280 0.73 -1.4
473,708 - IAI47_02280 0.73 +0.1
473,708 - IAI47_02280 0.73 +0.0
473,708 - IAI47_02280 0.73 +0.8
473,708 - IAI47_02280 0.73 +0.0
473,710 + IAI47_02280 0.73 -0.1
473,710 + IAI47_02280 0.73 +0.4
473,711 - IAI47_02280 0.73 -1.6
473,711 - IAI47_02280 0.73 +1.0
473,711 - IAI47_02280 0.73 -1.7
473,790 + IAI47_02280 0.79 -0.6
473,790 + IAI47_02280 0.79 -0.6
473,790 + IAI47_02280 0.79 +0.9
473,791 - IAI47_02280 0.79 +1.3
473,791 - IAI47_02280 0.79 +0.1
473,791 - IAI47_02280 0.79 -2.3
473,791 - IAI47_02280 0.79 -0.3
473,791 - IAI47_02280 0.79 -0.7
473,791 - +1.0
473,791 - IAI47_02280 0.79 +1.7
473,791 - IAI47_02280 0.79 +0.9
473,793 - IAI47_02280 0.79 +1.0
473,793 - IAI47_02280 0.79 +0.2
473,793 - IAI47_02280 0.79 -0.2
473,793 - IAI47_02280 0.79 -1.3
473,805 - IAI47_02280 0.80 -1.7
473,825 + IAI47_02280 0.82 +1.0
473,825 + IAI47_02280 0.82 +1.4
473,826 - IAI47_02280 0.82 +1.2
473,826 - IAI47_02280 0.82 +0.1
473,845 - IAI47_02280 0.83 -0.3
473,872 - IAI47_02280 0.85 -0.3
473,872 - IAI47_02280 0.85 +0.8
473,896 + IAI47_02280 0.87 +0.5
473,896 + IAI47_02280 0.87 -1.0
473,897 - IAI47_02280 0.87 +0.2
473,901 + IAI47_02280 0.88 +0.8
473,902 - IAI47_02280 0.88 -0.6
473,902 - IAI47_02280 0.88 +1.0
473,902 - IAI47_02280 0.88 -0.3
473,902 - IAI47_02280 0.88 +1.5
473,933 - -0.5
473,940 + +0.2
474,018 + -0.9
474,018 + +1.0
474,018 + -0.6
474,018 + -0.8
474,019 - -0.6
474,019 - +1.6
474,019 - +0.0
474,036 + -1.3
474,054 + -1.0
474,055 - -0.8
474,055 - +0.0
474,055 - -0.7
474,055 - +1.2
474,055 - +1.0
474,060 + -0.6
474,061 - -0.1
474,061 - -1.1
474,061 - +1.6

Or see this region's nucleotide sequence