Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21650 and IAI47_21655 are separated by 104 nucleotides IAI47_21655 and IAI47_21660 are separated by 248 nucleotides IAI47_21660 and IAI47_21665 are separated by 386 nucleotides IAI47_21665 and IAI47_21670 are separated by 239 nucleotides
IAI47_21650: IAI47_21650 - Gfo/Idh/MocA family oxidoreductase, at 73,871 to 74,884
_21650
IAI47_21655: IAI47_21655 - LacI family DNA-binding transcriptional regulator, at 74,989 to 75,114
_21655
IAI47_21660: IAI47_21660 - PACE efflux transporter, at 75,363 to 75,800
_21660
IAI47_21665: IAI47_21665 - DUF333 domain-containing protein, at 76,187 to 76,435
_21665
IAI47_21670: IAI47_21670 - LuxR family transcriptional regulator, at 76,675 to 77,310
_21670
Position (kb) 75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 74.441 kb on + strand, within IAI47_21650 at 74.441 kb on + strand, within IAI47_21650 at 74.441 kb on + strand, within IAI47_21650 at 74.442 kb on - strand, within IAI47_21650 at 74.442 kb on - strand, within IAI47_21650 at 74.442 kb on - strand, within IAI47_21650 at 74.485 kb on + strand, within IAI47_21650 at 74.486 kb on - strand, within IAI47_21650 at 74.486 kb on - strand, within IAI47_21650 at 74.518 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.537 kb on + strand, within IAI47_21650 at 74.538 kb on - strand, within IAI47_21650 at 74.538 kb on - strand, within IAI47_21650 at 74.538 kb on - strand, within IAI47_21650 at 74.538 kb on - strand, within IAI47_21650 at 74.538 kb on - strand, within IAI47_21650 at 74.538 kb on - strand, within IAI47_21650 at 74.544 kb on + strand, within IAI47_21650 at 74.544 kb on + strand, within IAI47_21650 at 74.544 kb on + strand, within IAI47_21650 at 74.544 kb on + strand, within IAI47_21650 at 74.544 kb on + strand, within IAI47_21650 at 74.544 kb on + strand, within IAI47_21650 at 74.545 kb on - strand, within IAI47_21650 at 74.545 kb on - strand, within IAI47_21650 at 74.545 kb on - strand, within IAI47_21650 at 74.545 kb on - strand, within IAI47_21650 at 74.557 kb on + strand, within IAI47_21650 at 74.558 kb on - strand, within IAI47_21650 at 74.610 kb on + strand, within IAI47_21650 at 74.610 kb on + strand, within IAI47_21650 at 74.610 kb on + strand, within IAI47_21650 at 74.611 kb on - strand, within IAI47_21650 at 74.611 kb on - strand, within IAI47_21650 at 74.621 kb on - strand, within IAI47_21650 at 74.679 kb on - strand, within IAI47_21650 at 74.686 kb on + strand, within IAI47_21650 at 74.686 kb on + strand, within IAI47_21650 at 74.686 kb on + strand, within IAI47_21650 at 74.687 kb on - strand, within IAI47_21650 at 74.689 kb on - strand, within IAI47_21650 at 74.842 kb on + strand at 74.900 kb on - strand at 74.900 kb on - strand at 74.941 kb on + strand at 74.942 kb on - strand at 74.971 kb on + strand at 74.971 kb on + strand at 74.972 kb on - strand at 75.084 kb on + strand, within IAI47_21655 at 75.119 kb on + strand at 75.120 kb on - strand at 75.124 kb on + strand at 75.126 kb on + strand at 75.126 kb on + strand at 75.132 kb on + strand at 75.155 kb on + strand at 75.158 kb on + strand at 75.163 kb on + strand at 75.163 kb on + strand at 75.164 kb on - strand at 75.182 kb on + strand at 75.183 kb on - strand at 75.183 kb on - strand at 75.183 kb on - strand at 75.183 kb on - strand at 75.197 kb on + strand at 75.198 kb on - strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.237 kb on + strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.238 kb on - strand at 75.281 kb on - strand at 75.281 kb on - strand at 75.281 kb on - strand at 75.291 kb on + strand at 75.291 kb on + strand at 75.291 kb on + strand at 75.291 kb on + strand at 75.291 kb on + strand at 75.291 kb on + strand at 75.292 kb on - strand at 75.305 kb on + strand at 75.305 kb on + strand at 75.305 kb on + strand at 75.306 kb on - strand at 75.306 kb on - strand at 75.306 kb on - strand at 75.332 kb on - strand at 75.332 kb on - strand at 75.332 kb on - strand at 75.332 kb on - strand at 75.344 kb on + strand at 75.344 kb on + strand at 75.344 kb on + strand at 75.345 kb on - strand at 75.345 kb on - strand at 75.372 kb on + strand at 75.372 kb on + strand at 75.372 kb on + strand at 75.372 kb on + strand at 75.372 kb on + strand at 75.373 kb on - strand at 75.373 kb on - strand at 75.373 kb on - strand at 75.373 kb on - strand at 75.373 kb on - strand at 75.376 kb on + strand at 75.376 kb on + strand at 75.376 kb on + strand at 75.376 kb on + strand at 75.448 kb on + strand, within IAI47_21660 at 75.449 kb on - strand, within IAI47_21660 at 75.449 kb on - strand, within IAI47_21660 at 75.449 kb on - strand, within IAI47_21660 at 75.455 kb on + strand, within IAI47_21660 at 75.540 kb on + strand, within IAI47_21660 at 75.540 kb on + strand, within IAI47_21660 at 75.540 kb on + strand, within IAI47_21660 at 75.541 kb on - strand, within IAI47_21660 at 75.541 kb on - strand, within IAI47_21660 at 75.541 kb on - strand, within IAI47_21660 at 75.541 kb on - strand, within IAI47_21660 at 75.643 kb on + strand, within IAI47_21660 at 75.643 kb on + strand, within IAI47_21660 at 75.643 kb on + strand, within IAI47_21660 at 75.644 kb on - strand, within IAI47_21660 at 75.680 kb on + strand, within IAI47_21660 at 75.681 kb on - strand, within IAI47_21660 at 75.681 kb on - strand, within IAI47_21660 at 75.683 kb on + strand, within IAI47_21660 at 75.683 kb on + strand, within IAI47_21660 at 75.684 kb on - strand, within IAI47_21660 at 75.684 kb on - strand, within IAI47_21660 at 75.744 kb on + strand, within IAI47_21660 at 75.745 kb on - strand, within IAI47_21660 at 75.745 kb on - strand, within IAI47_21660 at 75.745 kb on - strand, within IAI47_21660 at 75.745 kb on - strand, within IAI47_21660 at 75.753 kb on - strand, within IAI47_21660 at 75.773 kb on + strand at 75.803 kb on + strand at 75.895 kb on + strand at 76.114 kb on + strand at 76.140 kb on - strand at 76.145 kb on - strand at 76.150 kb on + strand at 76.151 kb on - strand at 76.151 kb on - strand at 76.212 kb on - strand, within IAI47_21665 at 76.331 kb on - strand, within IAI47_21665 at 76.337 kb on + strand, within IAI47_21665 at 76.437 kb on + strand at 76.493 kb on + strand at 76.677 kb on - strand at 76.677 kb on - strand at 76.690 kb on - strand at 76.787 kb on + strand, within IAI47_21670 at 76.788 kb on - strand, within IAI47_21670 at 76.792 kb on - strand, within IAI47_21670 at 76.800 kb on - strand, within IAI47_21670
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 74,441 + IAI47_21650 0.56 +0.9 74,441 + IAI47_21650 0.56 -1.0 74,441 + IAI47_21650 0.56 -2.8 74,442 - IAI47_21650 0.56 -1.5 74,442 - IAI47_21650 0.56 -1.5 74,442 - IAI47_21650 0.56 +1.6 74,485 + IAI47_21650 0.61 -1.2 74,486 - IAI47_21650 0.61 +0.4 74,486 - IAI47_21650 0.61 +1.0 74,518 + IAI47_21650 0.64 +1.2 74,537 + IAI47_21650 0.66 +1.4 74,537 + IAI47_21650 0.66 +0.3 74,537 + IAI47_21650 0.66 +1.2 74,537 + IAI47_21650 0.66 +0.5 74,537 + IAI47_21650 0.66 +0.9 74,537 + IAI47_21650 0.66 +0.4 74,537 + IAI47_21650 0.66 +0.9 74,538 - IAI47_21650 0.66 +2.0 74,538 - IAI47_21650 0.66 -0.1 74,538 - IAI47_21650 0.66 +0.7 74,538 - IAI47_21650 0.66 -0.0 74,538 - IAI47_21650 0.66 -0.4 74,538 - IAI47_21650 0.66 -0.5 74,544 + IAI47_21650 0.66 -0.7 74,544 + IAI47_21650 0.66 -0.8 74,544 + IAI47_21650 0.66 -0.1 74,544 + IAI47_21650 0.66 +0.4 74,544 + IAI47_21650 0.66 +0.9 74,544 + IAI47_21650 0.66 +0.0 74,545 - IAI47_21650 0.66 -0.8 74,545 - IAI47_21650 0.66 +0.9 74,545 - IAI47_21650 0.66 +1.3 74,545 - IAI47_21650 0.66 +0.4 74,557 + IAI47_21650 0.68 +0.3 74,558 - IAI47_21650 0.68 +0.1 74,610 + IAI47_21650 0.73 +0.3 74,610 + IAI47_21650 0.73 -0.1 74,610 + IAI47_21650 0.73 -0.7 74,611 - IAI47_21650 0.73 -1.3 74,611 - IAI47_21650 0.73 -2.0 74,621 - IAI47_21650 0.74 +1.6 74,679 - IAI47_21650 0.80 -1.3 74,686 + IAI47_21650 0.80 +0.9 74,686 + IAI47_21650 0.80 +0.6 74,686 + IAI47_21650 0.80 +0.3 74,687 - IAI47_21650 0.80 +0.1 74,689 - IAI47_21650 0.81 -1.0 74,842 + +0.9 74,900 - +0.0 74,900 - -0.7 74,941 + -1.0 74,942 - +0.0 74,971 + -0.3 74,971 + +0.7 74,972 - +0.7 75,084 + IAI47_21655 0.75 -0.6 75,119 + -0.1 75,120 - -0.2 75,124 + -1.1 75,126 + -1.7 75,126 + +0.1 75,132 + -1.1 75,155 + -2.4 75,158 + -0.4 75,163 + -1.0 75,163 + +0.2 75,164 - +0.2 75,182 + +1.4 75,183 - +0.9 75,183 - -0.5 75,183 - +0.1 75,183 - +0.2 75,197 + -0.6 75,198 - +1.2 75,237 + -0.2 75,237 + +1.1 75,237 + -0.1 75,237 + -0.5 75,237 + -0.7 75,237 + +1.3 75,237 + -0.3 75,237 + +0.4 75,237 + +0.1 75,238 - -0.1 75,238 - +0.9 75,238 - +0.3 75,238 - -0.3 75,238 - +0.1 75,238 - +2.2 75,238 - +0.9 75,238 - -0.1 75,238 - -1.0 75,238 - -1.8 75,238 - +0.3 75,238 - +0.9 75,238 - +0.4 75,238 - -0.4 75,238 - -1.1 75,238 - +1.7 75,281 - +0.5 75,281 - -0.1 75,281 - +0.6 75,291 + -0.1 75,291 + -0.7 75,291 + +0.6 75,291 + -0.0 75,291 + +0.7 75,291 + +2.9 75,292 - +2.2 75,305 + -0.5 75,305 + +1.9 75,305 + -0.3 75,306 - -0.1 75,306 - -0.1 75,306 - +1.9 75,332 - +0.9 75,332 - +0.9 75,332 - +0.3 75,332 - +1.2 75,344 + +0.6 75,344 + -0.6 75,344 + +0.9 75,345 - +1.7 75,345 - -0.1 75,372 + +0.3 75,372 + -0.4 75,372 + +0.6 75,372 + -0.1 75,372 + +0.4 75,373 - +0.6 75,373 - +1.9 75,373 - -0.4 75,373 - +0.9 75,373 - +0.7 75,376 + -1.3 75,376 + -0.1 75,376 + -1.3 75,376 + +0.9 75,448 + IAI47_21660 0.19 +0.5 75,449 - IAI47_21660 0.20 -0.1 75,449 - IAI47_21660 0.20 +2.9 75,449 - IAI47_21660 0.20 -0.1 75,455 + IAI47_21660 0.21 -0.9 75,540 + IAI47_21660 0.40 -0.9 75,540 + IAI47_21660 0.40 +0.2 75,540 + IAI47_21660 0.40 -0.7 75,541 - IAI47_21660 0.41 +0.0 75,541 - IAI47_21660 0.41 +0.5 75,541 - IAI47_21660 0.41 -1.5 75,541 - IAI47_21660 0.41 +1.1 75,643 + IAI47_21660 0.64 +2.9 75,643 + IAI47_21660 0.64 +0.4 75,643 + IAI47_21660 0.64 -1.0 75,644 - IAI47_21660 0.64 -0.3 75,680 + IAI47_21660 0.72 +0.5 75,681 - IAI47_21660 0.73 +0.2 75,681 - IAI47_21660 0.73 -0.9 75,683 + IAI47_21660 0.73 +0.0 75,683 + IAI47_21660 0.73 -0.1 75,684 - IAI47_21660 0.73 -0.4 75,684 - IAI47_21660 0.73 -0.5 75,744 + IAI47_21660 0.87 +0.9 75,745 - IAI47_21660 0.87 +0.4 75,745 - IAI47_21660 0.87 -0.3 75,745 - IAI47_21660 0.87 -2.0 75,745 - IAI47_21660 0.87 +0.4 75,753 - IAI47_21660 0.89 +0.9 75,773 + +1.9 75,803 + +0.9 75,895 + +1.7 76,114 + -0.5 76,140 - -0.7 76,145 - -0.5 76,150 + -1.5 76,151 - +0.3 76,151 - -2.3 76,212 - IAI47_21665 0.10 -0.7 76,331 - IAI47_21665 0.58 +0.9 76,337 + IAI47_21665 0.60 +0.1 76,437 + +0.2 76,493 + -0.1 76,677 - -0.0 76,677 - -1.5 76,690 - +1.1 76,787 + IAI47_21670 0.18 +1.2 76,788 - IAI47_21670 0.18 +0.9 76,792 - IAI47_21670 0.18 -0.7 76,800 - IAI47_21670 0.20 +0.0
Or see this region's nucleotide sequence